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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02891-1
Contig ID Contig-U02891-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02891-1 (Contig-U02891-1Q) /CSM_Contig/Contig-U02891-1Q.Seq.d
ACTGTTGGCCTACTGGNATTTTTTTGTTTTTGTTTTTTTATTTTTTTTTT
TAAATAGAAATGGAATATTATTCACAAGCTATTGATTTAGTCAAAACTAC
ATTTGGTAGTGGTGGAGCAAAAGTTGAAGAAGAAGTATCGGCTACCACTA
CAACAACAACAATCAAATCGCCAAAAACTTTTAAATCAATGATTGGTAGT
GTAAAAGAAACAATTGAAAATGATGCCGAAAAGAATAAATCACAAAGGTT
GAATGAAGGTCAAAGATCAGCTAAAAAAGTGTCATACAGAAAAACCCCAT
TTTCATTTGGATTTTATGTTAAATTAATTAAAGGTGCATATTGTTTCGCT
AAAGGTGCCTATGTTACATTCAAAGAGGAAAAAGTTATCAAAGCATTCTT
ATCAACATTAAAAATCATTTTATTTGGTGTATTGGCATCCTATTTAGTCA
TCTTTTTCATGACATTCCCAATTAGATTAATCATATCATTTCTAACTTGG
ATTGGTATATCTCATTTAGAATCAATCGATCAAATGTTAGATACAAAACA
AGTAGTTGATGATATAGCTTATTTCATACCATTAGTAGTTGTTGGTACAT
TACGTTATGTTGTACCAACATTTAATGAAGATATGTTTTTCTTTGTATTA
GAATCACAAGATAAAAAACTATCAAGTTATTTAAAAGAATGTAAA
Gap no gap
Contig length 695
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1241800
End point 1242479
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U02891
List of clone(s) 

est1=SFH571F,1,497
est2=AFK168F,52,696
Translated Amino Acid sequence 
cwptgiflflffyfff*IEMEYYSQAIDLVKTTFGSGGAKVEEEVSATTTTTTIKSPKTF
KSMIGSVKETIENDAEKNKSQRLNEGQRSAKKVSYRKTPFSFGFYVKLIKGAYCFAKGAY
VTFKEEKVIKAFLSTLKIILFGVLASYLVIFFMTFPIRLIISFLTWIGISHLESIDQMLD
TKQVVDDIAYFIPLVVVGTLRYVVPTFNEDMFFFVLESQDKKLSSYLKECK
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxffcfcffifffk*kwniihklli*sklhlvvveqklkkkyrlplqqqqsnrqkl
lnq*lvv*kkqlkmmpkrinhkg*mkvkdqlkkchtekphfhldfmln*lkvhivslkvp
mlhskrkklskhsyqh*ksfylvywhpi*ssfs*hsqld*syhf*lglvyli*nqsikc*
iqnk*lmi*lisyh**llvhyvmlyqhlmkicfsly*nhkiknyqvi*knv


Frame B:
llaywxffvfvflffflnrngilftsy*fsqnyiw*wwsks*rrsigyhynnnnqiaknf
*indw*ckrnn*k*crke*itkve*rskis*ksviqknpifiwilc*in*rcilfr*rcl
cyiqrgksyqsiliniknhfiwcigilfshlfhdipn*inhiisnldwyisfrinrsnvr
yktss**yslfhtisscwyitlcctni**ryvflciritr*ktiklfkrm*


Frame C:
cwptgiflflffyfff*IEMEYYSQAIDLVKTTFGSGGAKVEEEVSATTTTTTIKSPKTF
KSMIGSVKETIENDAEKNKSQRLNEGQRSAKKVSYRKTPFSFGFYVKLIKGAYCFAKGAY
VTFKEEKVIKAFLSTLKIILFGVLASYLVIFFMTFPIRLIISFLTWIGISHLESIDQMLD
TKQVVDDIAYFIPLVVVGTLRYVVPTFNEDMFFFVLESQDKKLSSYLKECK
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02891-1 (Contig-U02891-1Q)
/CSM_Contig/Contig-U02891-1Q.Seq.d
         (695 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02891-1 (Contig-U02891-1Q) /CSM_Contig/Conti...  1277  0.0
Contig-U09307-1 (Contig-U09307-1Q) /CSM_Contig/Conti...    70  3e-12
Contig-U14024-1 (Contig-U14024-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13905-1 (Contig-U13905-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11739-1 (Contig-U11739-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13269-1 (Contig-U13269-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13230-1 (Contig-U13230-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12054-1 (Contig-U12054-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12044-1 (Contig-U12044-1Q) /CSM_Contig/Conti...    38  0.012

>Contig-U02891-1 (Contig-U02891-1Q) /CSM_Contig/Contig-U02891-1Q.Seq.d
          Length = 695

 Score = 1277 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Plus

                                                                       
Query: 52  aaatagaaatggaatattattcacaagctattgatttagtcaaaactacatttggtagtg 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  aaatagaaatggaatattattcacaagctattgatttagtcaaaactacatttggtagtg 111

                                                                       
Query: 112 gtggagcaaaagttgaagaagaagtatcggctaccactacaacaacaacaatcaaatcgc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gtggagcaaaagttgaagaagaagtatcggctaccactacaacaacaacaatcaaatcgc 171

                                                                       
Query: 172 caaaaacttttaaatcaatgattggtagtgtaaaagaaacaattgaaaatgatgccgaaa 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caaaaacttttaaatcaatgattggtagtgtaaaagaaacaattgaaaatgatgccgaaa 231

                                                                       
Query: 232 agaataaatcacaaaggttgaatgaaggtcaaagatcagctaaaaaagtgtcatacagaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 agaataaatcacaaaggttgaatgaaggtcaaagatcagctaaaaaagtgtcatacagaa 291

                                                                       
Query: 292 aaaccccattttcatttggattttatgttaaattaattaaaggtgcatattgtttcgcta 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaaccccattttcatttggattttatgttaaattaattaaaggtgcatattgtttcgcta 351

                                                                       
Query: 352 aaggtgcctatgttacattcaaagaggaaaaagttatcaaagcattcttatcaacattaa 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaggtgcctatgttacattcaaagaggaaaaagttatcaaagcattcttatcaacattaa 411

                                                                       
Query: 412 aaatcattttatttggtgtattggcatcctatttagtcatctttttcatgacattcccaa 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaatcattttatttggtgtattggcatcctatttagtcatctttttcatgacattcccaa 471

                                                                       
Query: 472 ttagattaatcatatcatttctaacttggattggtatatctcatttagaatcaatcgatc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttagattaatcatatcatttctaacttggattggtatatctcatttagaatcaatcgatc 531

                                                                       
Query: 532 aaatgttagatacaaaacaagtagttgatgatatagcttatttcataccattagtagttg 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaatgttagatacaaaacaagtagttgatgatatagcttatttcataccattagtagttg 591

                                                                       
Query: 592 ttggtacattacgttatgttgtaccaacatttaatgaagatatgtttttctttgtattag 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttggtacattacgttatgttgtaccaacatttaatgaagatatgtttttctttgtattag 651

                                                       
Query: 652 aatcacaagataaaaaactatcaagttatttaaaagaatgtaaa 695
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aatcacaagataaaaaactatcaagttatttaaaagaatgtaaa 695


 Score = 32.2 bits (16), Expect = 0.76
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  actgttggcctactgg 16
          ||||||||||||||||
Sbjct: 1  actgttggcctactgg 16


>Contig-U09307-1 (Contig-U09307-1Q) /CSM_Contig/Contig-U09307-1Q.Seq.d
          Length = 713

 Score = 69.9 bits (35), Expect = 3e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 661 ataaaaaactatcaagttatttaaaagaatgtaaa 695
           |||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaaaactatcaagttatttaaaagaatgtaaa 35


>Contig-U14024-1 (Contig-U14024-1Q) /CSM_Contig/Contig-U14024-1Q.Seq.d
          Length = 1126

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 144 accactacaacaacaacaatca 165
           ||||||||||||||||||||||
Sbjct: 436 accactacaacaacaacaatca 457


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,039
Number of Sequences: 6905
Number of extensions: 18039
Number of successful extensions: 6010
Number of sequences better than 10.0: 757
length of query: 695
length of database: 5,674,871
effective HSP length: 16
effective length of query: 679
effective length of database: 5,564,391
effective search space: 3778221489
effective search space used: 3778221489
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.24
Homology vs DNA 
Query= Contig-U02891-1 (Contig-U02891-1Q) /CSM_Contig/Contig-U02891-1Q.Seq.d
         (695 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ327737) Dictyostelium discoideum cDNA clone:dda21g17, 5' ...  1277   0.0    1
(BJ388889) Dictyostelium discoideum cDNA clone:dds16m17, 5' ...   803   0.0    2
(AU071550) Dictyostelium discoideum slug cDNA, clone SSB776.       70   1e-07  1
(BJ372417) Dictyostelium discoideum cDNA clone:ddc12e16, 3' ...    34   0.012  3
(BJ397401) Dictyostelium discoideum cDNA clone:dds46l06, 5' ...    34   0.017  3
(AC021033) Homo sapiens chromosome 10 clone RP11-310A17, WOR...    48   0.052  3
(AC073367) Homo sapiens chromosome 10 clone RP11-197M22, com...    48   0.069  5
(AC021030) Homo sapiens chromosome 10 clone RP11-157K11, WOR...    48   0.090  5
(AC021031) Homo sapiens chromosome 10 clone RP11-177G13, WOR...    48   0.096  5
(AC021041) Homo sapiens chromosome 10 clone RP11-535D1, WORK...    48   0.11   5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    44   0.15   7
(AC022282) Homo sapiens chromosome 10 clone RP11-381P5, WORK...    48   0.20   4
(BX072481) Single read from an extremity of a full-length cD...    42   0.26   2
(FG298401) 1108793311379 New World Screwworm Larvae 9387 EST...    46   0.32   2
(FG297573) 1108793288740 New World Screwworm Larvae 9387 EST...    46   0.33   2
(FG300854) 1108799246287 New World Screwworm Larvae 9387 EST...    46   0.34   2
(FG293495) 1108770672472 New World Screwworm Larvae 9387 EST...    46   0.34   2
(FG295844) 1108770741617 New World Screwworm Larvae 9387 EST...    46   0.34   2
(FG301101) 1108799260109 New World Screwworm Larvae 9387 EST...    46   0.35   2
(FG291266) 1108793336364 New World Screwworm Egg 9261 ESTs C...    46   0.35   2
(FG293250) 1108770666541 New World Screwworm Larvae 9387 EST...    46   0.35   2
(FG300935) 1108799246475 New World Screwworm Larvae 9387 EST...    46   0.36   2
(GC698729) Sequence 13974 from patent US 6812339.                  48   0.45   1
(GC698536) Sequence 13781 from patent US 6812339.                  48   0.45   1
(EF445013) Homo sapiens ras suppressor protein 1 (RSU1) gene...    48   0.45   1
(EI777376) PM1012L21TF BAC library from the prostate metasta...    48   0.45   1
(CN816106) HRO4517_A10_A19ZS5 Lib AA071E1X Avena sativa cv. ...    48   0.45   1
(AC233485) Solanum tuberosum chromosome 1 clone RH120L06, **...    34   0.46   6
(BJ363649) Dictyostelium discoideum cDNA clone:ddc27a20, 5' ...    38   0.57   2
(BJ327509) Dictyostelium discoideum cDNA clone:dda20p13, 5' ...    38   0.66   2
(AC108614) Rattus norvegicus clone CH230-292A9, *** SEQUENCI...    40   0.69   8
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.70   7
(BJ370390) Dictyostelium discoideum cDNA clone:ddc53o22, 5' ...    38   0.92   2
(AC178960) Strongylocentrotus purpuratus clone R3-3121L18, W...    36   1.1    5
(CS560531) Sequence 2 from Patent WO2007020617.                    36   1.2    10
(BE975619) bs44g08.x1 Drosophila melanogaster adult testis l...    34   1.3    2
(AC160664) Bos taurus clone CH240-95F17, WORKING DRAFT SEQUE...    36   1.3    8
(AC213343) Pongo abelii chromosome 12 clone CH276-497G5, WOR...    32   1.5    7
(AZ669209) ENTJJ53TR Entamoeba histolytica Sheared DNA Entam...    32   1.6    3
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.8    1
(AK107293) Oryza sativa Japonica Group cDNA clone:002-126-C0...    46   1.8    1
(AC146948) Oryza sativa Japonica Group chromosome 11 clone P...    46   1.8    1
(AC137924) Oryza sativa Japonica Group chromosome 11 clone O...    46   1.8    1
(EA688098) Sequence 66977 from patent US 7365185.                  46   1.8    1
(CT025721) D.miranda DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(AY560576) Zea mays chromosome 4S clone Z078P04, *** SEQUENC...    46   1.8    1
(AC218161) Zea mays chromosome 2 clone CH201-420D6; ZMMBBc04...    46   1.8    1
(AC208669) Zea mays chromosome 2 clone CH201-460L18; ZMMBBc0...    46   1.8    1
(AC197239) Zea mays chromosome 4 clone ZMMBBb-13D9; ZMMBBb00...    46   1.8    1
(AC180679) Strongylocentrotus purpuratus clone R3-3087O15, W...    46   1.8    1
(EK410089) 1095505158268 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(CW850300) OG_BBa0055E06.r OG_BBa Oryza glaberrima genomic c...    46   1.8    1
(CW666564) OG_BBa0021I24.f OG_BBa Oryza glaberrima genomic c...    46   1.8    1
(CW632532) OP__Ba0060K03.f OP__Ba Oryza punctata genomic clo...    46   1.8    1
(CW536498) OP__Ba0033D08.r OP__Ba Oryza punctata genomic clo...    46   1.8    1
(CW506327) OP__Ba0005P11.r OP__Ba Oryza punctata genomic clo...    46   1.8    1
(CG427733) 01S0750-04A1-H05 UniformMu MuTAIL Library Zea may...    46   1.8    1
(CI140748) Oryza sativa Japonica Group cDNA, clone: 027-M129...    46   1.8    1
(CB652949) OSJNEc03I02.r OSJNEc Oryza sativa Japonica Group ...    46   1.8    1
(CB621007) OSIIEa06J19.r OSIIEa Oryza sativa Indica Group cD...    46   1.8    1
(C73156) Oryza sativa Japonica Group cDNA, partial sequence ...    46   1.8    1
(FG962559) MA_LYP9_01343 Mature embryo cDNA Library of LYP9 ...    46   1.8    1
(FG290401) 1108793318243 New World Screwworm Egg 9261 ESTs C...    46   1.8    1
(CR936499) Zebrafish DNA sequence from clone CH211-130N3 in ...    40   1.9    4
(AC209616) Spermophilus tridecemlineatus clone VMRC20-211C4,...    36   2.2    5
(D86417) Bacillus subtilis 35.7 kb genomic DNA, 70-73 degree...    40   2.6    2
(BJ370083) Dictyostelium discoideum cDNA clone:ddc52h03, 5' ...    32   2.6    3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   2.7    8
(BJ370330) Dictyostelium discoideum cDNA clone:ddc53b21, 5' ...    32   2.7    3
(AC186040) Pan troglodytes BAC clone CH251-551L22 from chrom...    42   2.8    4
(Z99108) Bacillus subtilis complete genome (section 5 of 21)...    40   2.9    3
(AC130564) Rattus norvegicus clone CH230-109L18, *** SEQUENC...    32   3.3    2
(AC098419) Rattus norvegicus clone CH230-2E21, *** SEQUENCIN...    32   3.4    2
(BJ389026) Dictyostelium discoideum cDNA clone:dds17n01, 5' ...    32   3.4    3
(AC205208) Nomascus leucogenys leucogenys clone CH271-1J23, ...    44   3.5    4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   3.5    7
(AC154089) Medicago truncatula clone mth2-91j8, complete seq...    34   3.5    2
(AC183962) Pan troglodytes BAC clone CH251-711F5 from chromo...    42   3.6    5
(AC207132) Echinops telfairi clone CH238-186O13, WORKING DRA...    40   3.7    4
(CJ448448) Macaca fascicularis mRNA, clone: QflA-13823, 5' e...    36   3.9    2
(FE243481) CAPG7666.fwd CAPG Naegleria gruberi amoeba stage ...    38   4.0    2
(CJ449320) Macaca fascicularis mRNA, clone: QflA-14832, 5' e...    36   4.0    2
(CJ435308) Macaca fascicularis mRNA, clone: QccE-12344, 5' e...    36   4.2    2
(DU956826) 224229 Tomato MboI BAC Library Solanum lycopersic...    40   4.3    2
(AC157134) Bos taurus clone CH240-71F20, WORKING DRAFT SEQUE...    36   4.5    5
(AC202589) Medicago truncatula clone mth2-4c24, WORKING DRAF...    40   4.6    4
(CZ175880) MIAA-21L21b.b1 Meloidogyne incognita BAC end sequ...    32   4.6    2
(AC203517) Sorex araneus clone SA_Ba-192B19, WORKING DRAFT S...    36   4.6    4
(AP004871) Oryza sativa Japonica Group genomic DNA, chromoso...    36   4.8    4
(AC201865) Macaca mulatta clone CH250-231E6, WORKING DRAFT S...    38   5.4    4
(BV275565) S232P6564FA11.T0 Beagle Canis familiaris STS geno...    32   5.6    3
(U47023) Methanococcus maripaludis plasmid pURB500, complete...    36   6.3    3
(AM477927) Vitis vinifera, whole genome shotgun sequence, co...    34   6.4    3
(CU570993) Zebrafish DNA sequence from clone DKEYP-88C1 in l...    42   6.9    3
(AC129323) Mus musculus BAC clone RP23-237M15 from 9, comple...    44   7.0    1
(AC129203) Mus musculus BAC clone RP24-225M1 from chromosome...    44   7.0    1
(CU655882) P.sativum DNA sequence from clone JICPSV-297I9.         44   7.0    1
(AC148759) Oryza sativa Japonica Group chromosome 11 clone O...    44   7.0    1
(AC136378) Oryza sativa Japonica Group chromosome 11 clone O...    44   7.0    1
(AC171140) Helobdella robusta clone CH306-1B2, complete sequ...    44   7.0    1
(AL355538) Human DNA sequence from clone RP4-787H6 on chromo...    44   7.0    1
(AL117672) Human chromosome 14 DNA sequence BAC R-142C1 of l...    44   7.0    1
(AC004919) Homo sapiens PAC clone RP5-895B23 from UL, comple...    44   7.0    1
(AC115490) Rattus norvegicus clone CH230-85K6, *** SEQUENCIN...    44   7.0    1
(CU928478) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.0    1
(CU672276) P.sativum DNA sequence *** SEQUENCING IN PROGRESS...    44   7.0    1
(AC231279) Pongo abelii chromosome UNKNOWN clone CH276-500M2...    44   7.0    1
(AC210024) Zea mays chromosome 3 clone CH201-510C15; ZMMBBc0...    44   7.0    1
(AC208664) Zea mays chromosome 6 clone CH201-374I4; ZMMBBc03...    44   7.0    1
(AC203905) Zea mays chromosome 8 clone CH201-212A16; ZMMBBc0...    44   7.0    1
(AC196415) Zea mays chromosome 6 clone CH201-210M6; ZMMBBc02...    44   7.0    1
(AC196101) Zea mays chromosome 6 clone CH201-319I7; ZMMBBc03...    44   7.0    1
(AC194729) Zea mays chromosome 2 clone ZMMBBb-367G3; ZMMBBb0...    44   7.0    1
(AC183216) Bos taurus clone CH240-102C7, WORKING DRAFT SEQUE...    44   7.0    1
(AC179707) Strongylocentrotus purpuratus clone R3-1021I1, WO...    44   7.0    1
(AC179620) Strongylocentrotus purpuratus clone R3-1028I02, W...    44   7.0    1
(AC177157) Strongylocentrotus purpuratus clone R3-4015D14, W...    44   7.0    1
(AC174917) Bos taurus clone CH240-113M19, WORKING DRAFT SEQU...    44   7.0    1
(AC167131) Mus musculus chromosome 1 clone RP23-124L10 map 1...    44   7.0    1
(BH059087) RPCI-24-365I18.TJ RPCI-24 Mus musculus genomic cl...    44   7.0    1
(FH575785) CHO_OF4681xm18r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.0    1
(AM654796) Entamoeba moshkovskii FIC GSS, clone mosh017d06.p1k.    44   7.0    1
(DE527936) Bombyx mori genomic DNA, Fosmid clone:GBMFno150_c...    44   7.0    1
(BZ879626) CH240_264G2.TV CHORI-240 Bos taurus genomic clone...    44   7.0    1
(EC435125) 133201894 Sea Urchin Lantem cDNA library Strongyl...    44   7.0    1
(DT793803) 127343973 TL1 Tribolium castaneum cDNA clone 120G...    44   7.0    1
(DN920154) MCF7RNAL27K02TR Human MCF7 breast cancer cell lin...    44   7.0    1
(CI369299) Oryza sativa Japonica Group cDNA, clone: J03B3032...    44   7.0    1
(BU837922) T107C02 Populus apical shoot cDNA library Populus...    44   7.0    1
(BJ355887) Dictyostelium discoideum cDNA clone:dda58e16, 3' ...    44   7.0    1
(BJ353902) Dictyostelium discoideum cDNA clone:dda51g20, 3' ...    44   7.0    1
(BJ353205) Dictyostelium discoideum cDNA clone:dda49g12, 3' ...    44   7.0    1
(BJ349579) Dictyostelium discoideum cDNA clone:dda36o21, 3' ...    44   7.0    1
(BJ341785) Dictyostelium discoideum cDNA clone:dda8l05, 3' e...    44   7.0    1
(BJ331756) Dictyostelium discoideum cDNA clone:dda36o21, 5' ...    44   7.0    1
(BE681645) 179378 MARC 4BOV Bos taurus cDNA 5', mRNA sequence.     44   7.0    1
(AW642937) cm24c09.w1 Blackshear/Soares normalized Xenopus e...    44   7.0    1
(AW177450) PM3-CT0149-010999-001-c05 CT0149 Homo sapiens cDN...    44   7.0    1
(AW177441) PM3-CT0149-270899-001-c05 CT0149 Homo sapiens cDN...    44   7.0    1
(BJ390585) Dictyostelium discoideum cDNA clone:dds22p22, 5' ...    32   7.6    3
(AC092596) Homo sapiens BAC clone RP11-100J5 from 4, complet...    40   8.0    3
(BJ392017) Dictyostelium discoideum cDNA clone:dds26g01, 5' ...    32   8.0    3
(EU643481) Adineta vaga clone Av110_A non-ribosomal peptide ...    38   8.1    2
(BJ396553) Dictyostelium discoideum cDNA clone:dds43h01, 5' ...    30   8.3    3
(AC026431) Homo sapiens chromosome 5 clone CTD-2222F6, compl...    38   8.3    2
(BJ370342) Dictyostelium discoideum cDNA clone:ddc53e19, 5' ...    30   8.4    3
(BS000068) Pan troglodytes chromosome 22 clone:RP43-046F21, ...    42   8.5    4
(AC127228) Mus musculus BAC clone RP24-539P4 from chromosome...    36   8.6    4
(BJ416332) Dictyostelium discoideum cDNA clone:ddv25g22, 5' ...    34   8.7    2
(AC187691) Callicebus moloch clone LB5-328K10, WORKING DRAFT...    32   8.7    7
(BJ396913) Dictyostelium discoideum cDNA clone:dds44l10, 5' ...    30   9.0    3
(BX936359) Zebrafish DNA sequence from clone CH211-7C14 in l...    42   9.0    2
(BJ370243) Dictyostelium discoideum cDNA clone:ddc53m12, 5' ...    30   9.0    3
(AC215950) Echinops telfairi clone CH238-403D2, WORKING DRAF...    40   9.1    3
(BJ337290) Dictyostelium discoideum cDNA clone:dda56m19, 5' ...    34   9.6    2
(AC148262) Callithrix jacchus clone CH259-210C3, WORKING DRA...    38   9.7    5
(AM427748) Vitis vinifera contig VV78X182471.4, whole genome...    36   9.8    3
(DE529064) Bombyx mori genomic DNA, Fosmid clone:GBMFno151_n...    40   9.8    2

>(BJ327737) Dictyostelium discoideum cDNA clone:dda21g17, 5' end,
           single read.
          Length = 645

 Score = 1277 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Plus


Query: 52  aaatagaaatggaatattattcacaagctattgatttagtcaaaactacatttggtagtg 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatagaaatggaatattattcacaagctattgatttagtcaaaactacatttggtagtg 60


Query: 112 gtggagcaaaagttgaagaagaagtatcggctaccactacaacaacaacaatcaaatcgc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtggagcaaaagttgaagaagaagtatcggctaccactacaacaacaacaatcaaatcgc 120


Query: 172 caaaaacttttaaatcaatgattggtagtgtaaaagaaacaattgaaaatgatgccgaaa 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaaacttttaaatcaatgattggtagtgtaaaagaaacaattgaaaatgatgccgaaa 180


Query: 232 agaataaatcacaaaggttgaatgaaggtcaaagatcagctaaaaaagtgtcatacagaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaataaatcacaaaggttgaatgaaggtcaaagatcagctaaaaaagtgtcatacagaa 240


Query: 292 aaaccccattttcatttggattttatgttaaattaattaaaggtgcatattgtttcgcta 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccccattttcatttggattttatgttaaattaattaaaggtgcatattgtttcgcta 300


Query: 352 aaggtgcctatgttacattcaaagaggaaaaagttatcaaagcattcttatcaacattaa 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggtgcctatgttacattcaaagaggaaaaagttatcaaagcattcttatcaacattaa 360


Query: 412 aaatcattttatttggtgtattggcatcctatttagtcatctttttcatgacattcccaa 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatcattttatttggtgtattggcatcctatttagtcatctttttcatgacattcccaa 420


Query: 472 ttagattaatcatatcatttctaacttggattggtatatctcatttagaatcaatcgatc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttagattaatcatatcatttctaacttggattggtatatctcatttagaatcaatcgatc 480


Query: 532 aaatgttagatacaaaacaagtagttgatgatatagcttatttcataccattagtagttg 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatgttagatacaaaacaagtagttgatgatatagcttatttcataccattagtagttg 540


Query: 592 ttggtacattacgttatgttgtaccaacatttaatgaagatatgtttttctttgtattag 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggtacattacgttatgttgtaccaacatttaatgaagatatgtttttctttgtattag 600


Query: 652 aatcacaagataaaaaactatcaagttatttaaaagaatgtaaa 695
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatcacaagataaaaaactatcaagttatttaaaagaatgtaaa 644

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 939,458,212
Number of extensions: 61288241
Number of successful extensions: 6698101
Number of sequences better than 10.0: 160
Length of query: 695
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 671
Effective length of database: 99,340,224,878
Effective search space: 66657290893138
Effective search space used: 66657290893138
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U02891-1 (Contig-U02891-1Q) /CSM_Contig/Contig-U02891-1Q.Seq.d
         (695 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000855_1826(CP000855|pid:none) Thermococcus onnurineus NA1, co...    34   4.9
AH1447(AH1447) probable tape-measure (Bacteriophage A118) lin011...    33   8.3
CP000725_1284(CP000725|pid:none) Streptococcus gordonii str. Cha...    33   8.3
EU825756_3(EU825756|pid:none) Salmonella enterica subsp. salamae...    33   8.3

>CP000855_1826(CP000855|pid:none) Thermococcus onnurineus NA1,
           complete genome.
          Length = 776

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +3

Query: 405 TLKI--ILFGVLASYLVIFFMTFPIRLIISFLTWIGISHLESIDQMLDTKQVVDDIAYFI 578
           TL+I  +++ V   Y+V F +   +  +++F+TWI +S L   +++LDT+ +    A F+
Sbjct: 404 TLEILAVVYKVRIDYVVEFVVVL-VWFVLTFVTWIALS-LPDKERLLDTESLKVSFAIFV 461

Query: 579 PLVVV 593
           P+ ++
Sbjct: 462 PIYLL 466

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,006,312,905
Number of extensions: 19392132
Number of successful extensions: 38926
Number of sequences better than 10.0: 4
Number of HSP's gapped: 38885
Number of HSP's successfully gapped: 4
Length of query: 231
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 107
Effective length of database: 649,847,548
Effective search space: 69533687636
Effective search space used: 69533687636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.21  top: 0.50  tms: 0.13  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U02891-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0