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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16210-1
Contig ID Contig-U16210-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16210-1 (Contig-U16210-1Q) /CSM_Contig/Contig-U16210-1Q.Seq.d
AAAAAAAAATTACCAATAGTTGTAATTTATTGTACAATATAAAAAATATA
GAAAAAAATGAAATTAATTATATTAATTGTATTAAGCATTTTAATATCAA
TTGTAATTTCAGGATCAGTACAAAGTAAAATTACTACAACACGTGGTATT
AGTAATGTATACAGTAAAAATGATATAAATAATATAAAACAATTCATTTC
AAGTAAATACAATGGTAATACCAAATTATATGGTGAATCATTAAAGGATA
CATTTTATGGAGTTGGAGTTTTAACACGTATTGGTGAAACAAATATTGAA
GCAACAAAAGACATTTGTAAACAAACCAAAGAACAATTAAAACAAAATAA
ATTTACAGATATTGAATTAGTTTTCAATGGAGTTACTATCCTTTCAGAAT
TAAAATGTTTACAAGGTGAATCATCATCATCATTGGGAAATGAACAACAA
TTACAAGATTTATTAAAAAATAAATTAGAGAATGGTTCATTATTGGAAAA
GACACAAGCTATTAATATTTATTTCACACTTTCAAGTGCAAAAGCAATCG
ATTCAAAAACCGTTTCAATAATTGATCCATTATTGATACAAGCTGTTAAT
TCAATGGTTTCACTCATGGACGAAGATGGTACTTTCAAGTCTGTCAGTAC
CGATGATGAAGGTAACCTTCAAAATACAGCCCGCTGCATACTTTGCATTG
GCTCGTTTATCTCATCGTTTAAAGAGTAATGAAGTCGATAAGTTGGTAGC
AAAAGTTGTAAACAAAGTTGACACTGTTTTAGCATCCGCCGACGAAACCA
CCGACAGTCTATACTTTAACGACCTTTCAACCACTTCCTCACTCTTACAT
GGTTTACTCTCATTGGCAAGCGTTAACGATAAGGTGGCCGATGTCATTAG
TAACAAGCAAATCAATCAAATCTCTGAATACCTTTTAAGACAAAAGAATG
TTGAATCCCTCTCTGATGCTTACCATTTAATCGTTGCACTCAAGAGATGT
CAAAAGAATTCAATCTCTCAACCAATCTCTTTGGCTTTAGTTAAATCAAT
TTACTCACCATCCGGTTTGAATGATATTCGTGTTCGTGTCACCGATATTT
TCGATCAACCAATCGAAGCATCAATTGTGATCAACAAGGTTGTCTCATCA
AAGAATCCACGTTCAACACCAATACTCTCTGGTAAGGAAATGAAATTCCA
ATCCTCTGATAAC----------CTNTTTTGGTTTTANCACCNATNGCCA
TTTTTGTCANTGGNTTTTTANTNGNTGGGACCAATTTTGGNAAANTNCCA
ANTGGNANGGGNTTNANTTACNCCNNTGGNTTCCCTGGNNGNATNTNTGC
NANTGGNNTCTTA
Gap gap included
Contig length 1353
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2788472
End point 2787120
Strand (PLUS/MINUS) MINUS
Number of clones 19
Number of EST 21
Link to clone list U16210
List of clone(s) 

est1=VHO296F,1,622
est2=VHO870F,7,620
est3=VHP310F,12,597
est4=VHM302F,15,597
est5=VHN109F,15,596
est6=VHD225F,18,620
est7=VHG623F,18,658
est8=VHH663F,18,619
est9=VHH860F,18,660
est10=VHN862F,21,626
est11=VFJ131F,24,504
est12=VFJ757F,24,599
est13=VHC127F,24,620
est14=VHC739F,24,620
est15=VHE188F,34,620
est16=VHM353F,34,621
est17=VHQ120F,34,674
est18=VHO404F,172,743
est19=VHC534F,239,377
est20=VFJ131Z,558,1212
est21=VHH860Z,1214,1353
Translated Amino Acid sequence 
kknyq*l*fivqykkyrkk*n*ly*ly*af*yql*fqdqykvkllqhvvlvmytvkmi*i
i*nnsfqvntmvipnymvnh*rihfmelef*hvlvkqilkqqktfvnkpknn*nkinlqi
ln*fsmellsfqn*nvykvnhhhhwemnnnykiy*kin*rmvhywkrhkllifishfqvq
kqsiqkpfq*lihy*YKLLIQWFHSWTKMVLSSLSVPMMKVTFKIQPAAYFALARLSHRL
KSNEVDKLVAKVVNKVDTVLASADETTDSLYFNDLSTTSSLLHGLLSLASVNDKVADVIS
NKQINQISEYLLRQKNVESLSDAYHLIVALKRCQKNSISQPISLALVKSIYSPSGLNDIR
VRVTDIFDQPIEASIVINKVVSSKNPRSTPILSGKEMKFQSSDN---

---LFWFXHXXPFLSXXFXXXGPILXXXQXXXXXXTPXXSLXXXXXXXS
Translated Amino Acid sequence (All Frames) 
Frame A:
kkklpivviycti*ki*kkmkliilivlsilisivisgsvqskitttrgisnvyskndin
nikqfisskyngntklygeslkdtfygvgvltrigetnieatkdickqtkeqlkqnkftd
ielvfngvtilselkclqgesssslgneqqlqdllknklengsllektqainiyftlssa
kaidsktvsiidplliqavnsmvslmdedgtfksvstddegnlqntarcilcigsfissf
ke**sr*vgsksckqs*hcfsirrrnhrqsil*rpfnhfltltwftligkr*r*ggrch*
*qanqsnl*ipfktkec*ipl*clpfnrctqemskefnlstnlfgfs*inlltirfe*ys
cschryfrstnrsincdqqgclikestfntntlw*gneipil**---

---LFWFXHXXPFLSXXFXXXGPILXXXQXXXXXXTPXXSLXXXXXXXS

Frame B:
kknyq*l*fivqykkyrkk*n*ly*ly*af*yql*fqdqykvkllqhvvlvmytvkmi*i
i*nnsfqvntmvipnymvnh*rihfmelef*hvlvkqilkqqktfvnkpknn*nkinlqi
ln*fsmellsfqn*nvykvnhhhhwemnnnykiy*kin*rmvhywkrhkllifishfqvq
kqsiqkpfq*lihy*YKLLIQWFHSWTKMVLSSLSVPMMKVTFKIQPAAYFALARLSHRL
KSNEVDKLVAKVVNKVDTVLASADETTDSLYFNDLSTTSSLLHGLLSLASVNDKVADVIS
NKQINQISEYLLRQKNVESLSDAYHLIVALKRCQKNSISQPISLALVKSIYSPSGLNDIR
VRVTDIFDQPIEASIVINKVVSSKNPRSTPILSGKEMKFQSSDN---

---xfgfxtxxhfcxwxfxxwdqfwxxxxwxgxxlxxwxpwxxxcxwxl

Frame C:
kkitnscnllynikniekneinyincikhfnincnfristk*nyyntwy**ciq*k*yk*
yktihfk*iqw*yqiiw*iikgyilwswsfntyw*nky*snkrhl*tnqrtiktk*iyry
*isfqwsyypfrikmftr*iiiiigk*ttitrfikk*irewfiigkdtsy*ylfhtfkck
snrfknrfnn*siidtsc*fngfthgrrwyfqvcqyr**r*pskysplhtlhwlvyliv*
rvmksisw*qkl*tkltlf*hpptkpptvytlttfqplphsymvyshwqaltirwpmslv
tsksikslntf*dkrmlnpslmlti*slhsrdvkriqslnqslwl*lnqfthhpv*mifv
fvspifsinqskhql*strlshqrihvqhqyslvrk*nsnpli---

---xlvlxpxaifvxgflxxgtnfgkxpxgxgxxyxxgfpgxxxaxgxl
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16210-1 (Contig-U16210-1Q)
/CSM_Contig/Contig-U16210-1Q.Seq.d
         (1363 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16210-1 (Contig-U16210-1Q) /CSM_Contig/Conti...  2403  0.0
Contig-U11252-1 (Contig-U11252-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U06629-1 (Contig-U06629-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U04398-1 (Contig-U04398-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U16391-1 (Contig-U16391-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U15959-1 (Contig-U15959-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U15521-1 (Contig-U15521-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U15057-1 (Contig-U15057-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11699-1 (Contig-U11699-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11681-1 (Contig-U11681-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U16210-1 (Contig-U16210-1Q) /CSM_Contig/Contig-U16210-1Q.Seq.d
          Length = 1363

 Score = 2403 bits (1212), Expect = 0.0
 Identities = 1322/1329 (99%)
 Strand = Plus / Plus

                                                                        
Query: 10   ttaccaatagttgtaatttattgtacaatataaaaaatatagnnnnnnntgaaattaatt 69
            ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 10   ttaccaatagttgtaatttattgtacaatataaaaaatatagaaaaaaatgaaattaatt 69

                                                                        
Query: 70   atattaattgtattaagcattttaatatcaattgtaatttcaggatcagtacaaagtaaa 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70   atattaattgtattaagcattttaatatcaattgtaatttcaggatcagtacaaagtaaa 129

                                                                        
Query: 130  attactacaacacgtggtattagtaatgtatacagtaaaaatgatataaataatataaaa 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130  attactacaacacgtggtattagtaatgtatacagtaaaaatgatataaataatataaaa 189

                                                                        
Query: 190  caattcatttcaagtaaatacaatggtaataccaaattatatggtgaatcattaaaggat 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190  caattcatttcaagtaaatacaatggtaataccaaattatatggtgaatcattaaaggat 249

                                                                        
Query: 250  acattttatggagttggagttttaacacgtattggtgaaacaaatattgaagcaacaaaa 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250  acattttatggagttggagttttaacacgtattggtgaaacaaatattgaagcaacaaaa 309

                                                                        
Query: 310  gacatttgtaaacaaaccaaagaacaattaaaacaaaataaatttacagatattgaatta 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310  gacatttgtaaacaaaccaaagaacaattaaaacaaaataaatttacagatattgaatta 369

                                                                        
Query: 370  gttttcaatggagttactatcctttcagaattaaaatgtttacaaggtgaatcatcatca 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370  gttttcaatggagttactatcctttcagaattaaaatgtttacaaggtgaatcatcatca 429

                                                                        
Query: 430  tcattgggaaatgaacaacaattacaagatttattaaaaaataaattagagaatggttca 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  tcattgggaaatgaacaacaattacaagatttattaaaaaataaattagagaatggttca 489

                                                                        
Query: 490  ttattggaaaagacacaagctattaatatttatttcacactttcaagtgcaaaagcaatc 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  ttattggaaaagacacaagctattaatatttatttcacactttcaagtgcaaaagcaatc 549

                                                                        
Query: 550  gattcaaaaaccgtttcaataattgatccattattgatacaagctgttaattcaatggtt 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  gattcaaaaaccgtttcaataattgatccattattgatacaagctgttaattcaatggtt 609

                                                                        
Query: 610  tcactcatggacgaagatggtactttcaagtctgtcagtaccgatgatgaaggtaacctt 669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  tcactcatggacgaagatggtactttcaagtctgtcagtaccgatgatgaaggtaacctt 669

                                                                        
Query: 670  caaaatacagcccgctgcatactttgcattggctcgtttatctcatcgtttaaagagtaa 729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  caaaatacagcccgctgcatactttgcattggctcgtttatctcatcgtttaaagagtaa 729

                                                                        
Query: 730  tgaagtcgataagttggtagcaaaagttgtaaacaaagttgacactgttttagcatccgc 789
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  tgaagtcgataagttggtagcaaaagttgtaaacaaagttgacactgttttagcatccgc 789

                                                                        
Query: 790  cgacgaaaccaccgacagtctatactttaacgacctttcaaccacttcctcactcttaca 849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  cgacgaaaccaccgacagtctatactttaacgacctttcaaccacttcctcactcttaca 849

                                                                        
Query: 850  tggtttactctcattggcaagcgttaacgataaggtggccgatgtcattagtaacaagca 909
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  tggtttactctcattggcaagcgttaacgataaggtggccgatgtcattagtaacaagca 909

                                                                        
Query: 910  aatcaatcaaatctctgaataccttttaagacaaaagaatgttgaatccctctctgatgc 969
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  aatcaatcaaatctctgaataccttttaagacaaaagaatgttgaatccctctctgatgc 969

                                                                        
Query: 970  ttaccatttaatcgttgcactcaagagatgtcaaaagaattcaatctctcaaccaatctc 1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  ttaccatttaatcgttgcactcaagagatgtcaaaagaattcaatctctcaaccaatctc 1029

                                                                        
Query: 1030 tttggctttagttaaatcaatttactcaccatccggtttgaatgatattcgtgttcgtgt 1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tttggctttagttaaatcaatttactcaccatccggtttgaatgatattcgtgttcgtgt 1089

                                                                        
Query: 1090 caccgatattttcgatcaaccaatcgaagcatcaattgtgatcaacaaggttgtctcatc 1149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 caccgatattttcgatcaaccaatcgaagcatcaattgtgatcaacaaggttgtctcatc 1149

                                                                        
Query: 1150 aaagaatccacgttcaacaccaatactctctggtaaggaaatgaaattccaatcctctga 1209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 aaagaatccacgttcaacaccaatactctctggtaaggaaatgaaattccaatcctctga 1209

                                                                        
Query: 1210 taacnnnnnnnnnnctnttttggttttancaccnatngccatttttgtcantggnttttt 1269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 taacnnnnnnnnnnctnttttggttttancaccnatngccatttttgtcantggnttttt 1269

                                                                        
Query: 1270 antngntgggaccaattttggnaaantnccaantggnangggnttnanttacnccnntgg 1329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 antngntgggaccaattttggnaaantnccaantggnangggnttnanttacnccnntgg 1329

                     
Query: 1330 nttccctgg 1338
            |||||||||
Sbjct: 1330 nttccctgg 1338


>Contig-U11252-1 (Contig-U11252-1Q) /CSM_Contig/Contig-U11252-1Q.Seq.d
          Length = 1418

 Score = 38.2 bits (19), Expect = 0.035
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 173 atataaataatataaaaca 191
           |||||||||||||||||||
Sbjct: 367 atataaataatataaaaca 385


>Contig-U06629-1 (Contig-U06629-1Q) /CSM_Contig/Contig-U06629-1Q.Seq.d
          Length = 661

 Score = 38.2 bits (19), Expect = 0.035
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 461 tattaaaaaataaattaga 479
           |||||||||||||||||||
Sbjct: 451 tattaaaaaataaattaga 469


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,718
Number of Sequences: 8402
Number of extensions: 30718
Number of successful extensions: 5408
Number of sequences better than 10.0: 520
length of query: 1363
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1347
effective length of database: 7,941,110
effective search space: 10696675170
effective search space used: 10696675170
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.22
Homology vs DNA 
Query= Contig-U16210-1 (Contig-U16210-1Q) /CSM_Contig/Contig-U16210-1Q.Seq.d
         (1363 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ432678) Dictyostelium discoideum cDNA clone:ddv19m07, 3' ...  1057   0.0    2
(BJ427639) Dictyostelium discoideum cDNA clone:ddv63g05, 5' ...   646   0.0    2
(BJ422642) Dictyostelium discoideum cDNA clone:ddv46h16, 5' ...   620   0.0    2
(BJ421892) Dictyostelium discoideum cDNA clone:ddv44m06, 5' ...   617   0.0    2
(BJ426341) Dictyostelium discoideum cDNA clone:ddv58l16, 5' ...   551   0.0    2
(BJ425407) Dictyostelium discoideum cDNA clone:ddv55j13, 5' ...   541   0.0    2
(BJ420636) Dictyostelium discoideum cDNA clone:ddv39o21, 5' ...   541   0.0    2
(BJ419545) Dictyostelium discoideum cDNA clone:ddv36n09, 5' ...   541   0.0    2
(BJ419792) Dictyostelium discoideum cDNA clone:ddv37a08, 5' ...   541   0.0    2
(BJ422668) Dictyostelium discoideum cDNA clone:ddv46m16, 5' ...   539   0.0    2
(BJ426910) Dictyostelium discoideum cDNA clone:ddv60l18, 5' ...   539   0.0    2
(BJ419180) Dictyostelium discoideum cDNA clone:ddv35e07, 5' ...   541   0.0    2
(BJ426468) Dictyostelium discoideum cDNA clone:ddv59h02, 5' ...   783   0.0    3
(BJ329350) Dictyostelium discoideum cDNA clone:dda24l17, 5' ...   438   0.0    3
(BJ426705) Dictyostelium discoideum cDNA clone:ddv59o24, 5' ...   543   0.0    3
(BJ414814) Dictyostelium discoideum cDNA clone:ddv20b15, 5' ...   500   0.0    2
(BJ425225) Dictyostelium discoideum cDNA clone:ddv55d01, 5' ...   494   0.0    2
(BJ426053) Dictyostelium discoideum cDNA clone:ddv57a03, 5' ...   492   0.0    2
(BJ427024) Dictyostelium discoideum cDNA clone:ddv61d03, 5' ...   494   0.0    2
(BJ414509) Dictyostelium discoideum cDNA clone:ddv19m07, 5' ...   438   0.0    2
(BJ330211) Dictyostelium discoideum cDNA clone:dda27a24, 5' ...   444   e-120  1
(BJ419487) Dictyostelium discoideum cDNA clone:ddv36c09, 5' ...    80   8e-18  2
(BJ441399) Dictyostelium discoideum cDNA clone:ddv46h16, 3' ...    98   1e-15  1
(BJ444631) Dictyostelium discoideum cDNA clone:ddv57a03, 3' ...    74   2e-08  1
(AC141704) Apis mellifera clone CH224-56H9, WORKING DRAFT SE...    50   0.22   1
(AC101655) Mus musculus clone RP23-201D5, LOW-PASS SEQUENCE ...    50   0.22   1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.43   10
(DX404911) GR_Sa0008N01.b1 Gossypium raimondii WGS library G...    36   0.62   2
(AC128001) Rattus norvegicus clone CH230-403D24, *** SEQUENC...    48   0.87   1
(AC121169) Rattus norvegicus clone CH230-483N5, WORKING DRAF...    48   0.87   1
(EK312800) 1095462403042 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.87   1
(EK243866) 1095460245183 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.87   1
(EJ353862) 1092963617493 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.87   1
(AG476489) Mus musculus molossinus DNA, clone:MSMg01-369I09....    48   0.87   1
(CD131991) MG1-0015T-R269-F01-U.G MG1-0015 Schistosoma manso...    48   0.87   1
(AC125320) Mus musculus BAC clone RP23-351P13 from chromosom...    34   1.7    2
(U00034) Caenorhabditis elegans cosmid C06E8, complete seque...    46   1.8    2
(CU302253) Zebrafish DNA sequence from clone DKEY-182M13.          44   2.2    4
(FH681141) CHO_OF5058xe03f1.ab1 CHO_OF5 Nicotiana tabacum ge...    32   2.3    4
(DU916366) 328387 Tomato EcoRI BAC Library Solanum lycopersi...    34   2.3    2
(FH097779) CHO_OF3025xh06f1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   2.4    4
(CT027598) Zebrafish DNA sequence from clone CH211-170D8 in ...    40   2.4    5
(EY354450) CAWZ3095.rev CAWZ Helobdella robusta Primary Late...    36   2.4    2
(AZ472102) 1M0287F11F Mouse 10kb plasmid UUGC1M library Mus ...    34   2.4    2
(CT277231) Sus scrofa genomic clone PigE-78D15, genomic surv...    32   2.8    3
(CU469503) Zebrafish DNA sequence from clone DKEY-251J19 in ...    46   3.5    1
(AL450397) Mouse DNA sequence from clone RP23-100G16 on chro...    46   3.5    1
(AM455107) Vitis vinifera contig VV78X004350.9, whole genome...    46   3.5    1
(AC170860) Glycine max clone gmw1-57d24, complete sequence.        46   3.5    1
(CU469440) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.5    1
(AC214764) Zea mays chromosome 5 clone CH201-72H19; ZMMBBc00...    46   3.5    1
(EK466903) 1095469427610 Global-Ocean-Sampling_GS-32-01-01-1...    46   3.5    1
(EK357655) 1095468706306 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.5    1
(EK122661) 1092964603639 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.5    1
(EK099639) 1092963002871 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.5    1
(DX398261) GH__Sa0009H03.b1 Gossypium herbaceum WGS library ...    46   3.5    1
(DU950465) 212665 Tomato MboI BAC Library Solanum lycopersic...    46   3.5    1
(DH353981) Oryzias latipes Fosmid clone:GOLWFno730_i19, reve...    46   3.5    1
(DH336555) Oryzias latipes Fosmid clone:GOLWFno704_e10, forw...    46   3.5    1
(DH335349) Oryzias latipes Fosmid clone:GOLWFno702_h21, forw...    46   3.5    1
(DH131889) Oryzias latipes Fosmid clone:GOLWFno339_k10, reve...    46   3.5    1
(DH127991) Oryzias latipes Fosmid clone:GOLWFno395_m16, forw...    46   3.5    1
(DH106572) Oryzias latipes Fosmid clone:GOLWFno355_h01, forw...    46   3.5    1
(DH054423) Oryzias latipes Fosmid clone:GOLWFno105_d07, reve...    46   3.5    1
(DH044916) Oryzias latipes Fosmid clone:GOLWFno10_g14, rever...    46   3.5    1
(AG402828) Mus musculus molossinus DNA, clone:MSMg01-260A23....    46   3.5    1
(EC824951) SME00000139 esmbsro2 Sawyeria marylandensis cDNA,...    46   3.5    1
(GE304898) OXAY-aaa64h05.g1 Oxytricha_pSMART_OXAY Sterkiella...    46   3.5    1
(GD163276) OXAX-aaa18b09.b1 Oxytricha_pSMART_OXAX Sterkiella...    46   3.5    1
(EY269134) BF01050A2D08.f1 Normalized subtracted keck librar...    46   3.5    1
(AF211131) Carsonella ruddii natural-host Cacopsylla pyri 23...    46   3.5    1
(AY170439) Dictyostelium discoideum mitochondrial DNA polyme...    32   4.2    4
(CZ982865) 195337 Tomato MboI BAC Library Solanum lycopersic...    44   4.6    2
(BX548042) Zebrafish DNA sequence from clone DKEY-146L4 in l...    32   6.3    2
(BX088596) Zebrafish DNA sequence from clone CH211-285J6 in ...    32   6.5    2
(V00693) cap-oxi1 genes of yeast mitochondrion.                    38   7.3    3
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    38   7.6    3
(EW976837) EST_sras_evg_784027 srasevg mixed_tissue Sebastes...    32   8.6    2
(EI310680) GM_WBc0041A06.f GM_WBc Glycine max genomic clone ...    34   8.7    2
(EW976838) EST_sras_evg_783643 srasevg mixed_tissue Sebastes...    32   8.7    2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    32   8.7    10
(BB981890) Plasmodium berghei str. ANKA cDNA clone: OK012202...    34   8.8    2
(AZ522065) 201PbG04 Pb MBN #21 Plasmodium berghei genomic 3'...    34   8.9    2
(AR544871) Sequence 2 from patent US 6747137.                      40   9.7    2
(DQ399267) Ceraeochrysa caligata voucher CASC 00216 16S ribo...    36   9.9    2

>(BJ432678) Dictyostelium discoideum cDNA clone:ddv19m07, 3' end,
            single read.
          Length = 655

 Score = 1057 bits (533), Expect(2) = 0.0
 Identities = 533/533 (100%)
 Strand = Plus / Minus


Query: 681  ccgctgcatactttgcattggctcgtttatctcatcgtttaaagagtaatgaagtcgata 740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  ccgctgcatactttgcattggctcgtttatctcatcgtttaaagagtaatgaagtcgata 474


Query: 741  agttggtagcaaaagttgtaaacaaagttgacactgttttagcatccgccgacgaaacca 800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  agttggtagcaaaagttgtaaacaaagttgacactgttttagcatccgccgacgaaacca 414


Query: 801  ccgacagtctatactttaacgacctttcaaccacttcctcactcttacatggtttactct 860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413  ccgacagtctatactttaacgacctttcaaccacttcctcactcttacatggtttactct 354


Query: 861  cattggcaagcgttaacgataaggtggccgatgtcattagtaacaagcaaatcaatcaaa 920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353  cattggcaagcgttaacgataaggtggccgatgtcattagtaacaagcaaatcaatcaaa 294


Query: 921  tctctgaataccttttaagacaaaagaatgttgaatccctctctgatgcttaccatttaa 980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293  tctctgaataccttttaagacaaaagaatgttgaatccctctctgatgcttaccatttaa 234


Query: 981  tcgttgcactcaagagatgtcaaaagaattcaatctctcaaccaatctctttggctttag 1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233  tcgttgcactcaagagatgtcaaaagaattcaatctctcaaccaatctctttggctttag 174


Query: 1041 ttaaatcaatttactcaccatccggtttgaatgatattcgtgttcgtgtcaccgatattt 1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173  ttaaatcaatttactcaccatccggtttgaatgatattcgtgttcgtgtcaccgatattt 114


Query: 1101 tcgatcaaccaatcgaagcatcaattgtgatcaacaaggttgtctcatcaaagaatccac 1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113  tcgatcaaccaatcgaagcatcaattgtgatcaacaaggttgtctcatcaaagaatccac 54


Query: 1161 gttcaacaccaatactctctggtaaggaaatgaaattccaatcctctgataac 1213
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53   gttcaacaccaatactctctggtaaggaaatgaaattccaatcctctgataac 1

 Score =  242 bits (122), Expect(2) = 0.0
 Identities = 122/122 (100%)
 Strand = Plus / Minus


Query: 560 ccgtttcaataattgatccattattgatacaagctgttaattcaatggtttcactcatgg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccgtttcaataattgatccattattgatacaagctgttaattcaatggtttcactcatgg 594


Query: 620 acgaagatggtactttcaagtctgtcagtaccgatgatgaaggtaaccttcaaaatacag 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acgaagatggtactttcaagtctgtcagtaccgatgatgaaggtaaccttcaaaatacag 534


Query: 680 cc 681
           ||
Sbjct: 533 cc 532

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,324,599,862
Number of extensions: 81421679
Number of successful extensions: 7800565
Number of sequences better than 10.0: 85
Length of query: 1363
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1339
Effective length of database: 96,409,374,237
Effective search space: 129092152103343
Effective search space used: 129092152103343
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U16210-1 (Contig-U16210-1Q) /CSM_Contig/Contig-U16210-1Q.Seq.d
         (1363 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_677(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.57
AY501889_1(AY501889|pid:none) Plasmodium vivax strain Thailand-N...    37   1.3
(Q00798) RecName: Full=Reticulocyte-binding protein 1; Flags: Pr...    37   1.3
A42771(A42771)reticulocyte-binding protein 1 - Plasmodium vivax        37   1.3
CP001581_519(CP001581|pid:none) Clostridium botulinum A2 str. Ky...    37   2.2
CP001293_38(CP001293|pid:none) Cyanothece sp. PCC 7424 plasmid p...    36   2.8
CP000812_1360(CP000812|pid:none) Thermotoga lettingae TMO, compl...    36   3.7
CR940348_539(CR940348|pid:none) Theileria annulata strain Ankara...    35   4.8
BC046052_1(BC046052|pid:none) Danio rerio ribophorin II, mRNA (c...    35   4.8
BC066678_1(BC066678|pid:none) Danio rerio ribophorin II, mRNA (c...    35   4.8
CR382129_567(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    35   4.8
AE014187_265(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   6.3
(Q14789) RecName: Full=Golgin subfamily B member 1; AltName: Ful...    35   8.3
AB371588_1(AB371588|pid:none) Homo sapiens GOLGB1 mRNA for golgi...    35   8.3
Y00282_1(Y00282|pid:none) Human mRNA for ribophorin II.                35   8.3
D25542_1(D25542|pid:none) Homo sapiens mRNA for golgi antigen gc...    35   8.3
FM992690_99(FM992690|pid:none) Candida dubliniensis CD36 chromos...    35   8.3
A56539(A56539;S37536) giantin - human  &X75304_1(X75304|pid:none)      35   8.3

>AL844509_677(AL844509|pid:none) Plasmodium falciparum 3D7
           chromosome 13.
          Length = 420

 Score = 38.5 bits (88), Expect = 0.57
 Identities = 48/208 (23%), Positives = 78/208 (37%), Gaps = 25/208 (12%)
 Frame = +1

Query: 136 TTRGISNVYSKNDINNIKQFISSKYNGNTKLYGESLKDTFYGVGVLTRIGETNIEATKDI 315
           T +  SN YS    NN+  + +S+YN        S+KDT+    +       + +A  +
Sbjct: 222 TFKNNSNNYSSIMHNNVNSYNNSEYN-------ISIKDTYVPKNLQP---SNDNKAKSNT 271

Query: 316 CKQTKEQLKQNKFTDIELVFNG----------VTILSELKCLQGESSSSLGNEQ--QLQD 459
            ++ K   K NKFT I L  N           +    + K  +  S   + N Q   + D
Sbjct: 272 YRKNKYTKKNNKFTSIHLNNNNNSNNKLYTHHMNHKKKKKKKKKNSQEKISNHQHDNIMD 331

Query: 460 LLKNKLENGSLLEKTQAINIYFTLSSAKAIDSKTVSIIDPLLIQAVNSMVSLMD------ 621
             KN  EN   +      N Y   ++ K+    +   ID +    +NSM +L +
Sbjct: 332 QKKNFFENKKNIHNKYFANSYIDNNTVKSFQLISNVQIDGISKDLINSMDNLNNWESSKD 391

Query: 622 -------EDGTFKSVSTDDEGNLQNTAR 684
                  +D TF     +   N+ N  R
Sbjct: 392 NCNETPRDDFTFNHFQKNKNNNILNKLR 419

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,843,119,205
Number of extensions: 37847283
Number of successful extensions: 89261
Number of sequences better than 10.0: 18
Number of HSP's gapped: 89185
Number of HSP's successfully gapped: 18
Length of query: 454
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 322
Effective length of database: 623,955,076
Effective search space: 200913534472
Effective search space used: 200913534472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.83  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for Contig-U16210-1 is mit
VS (DIR, S) 0
VH (FL, L) 17
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0