>SHE117 (SHE117Q) /CSM/SH/SHE1-A/SHE117Q.Seq.d/
XXXXXXXXXXCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAG
ACACAAGGCATGTTGGAATCTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCA
ATTCAAATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAAC
CGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATA
TGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATT
CAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGG
ACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTA
CTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAAC
TCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAA
CTCTCATATCCCACTCTACTTTCACTT

---SNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFKLPSFPDTSLPITQIDDKTG
IFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALILDGNVYDGH
LNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLKPMCCSGHNS
HIPLYFH

Frame A:
---vpmsfslnhtwpvnqadtrhvgissnqcietttnqsnsnyhhsqtlhyqshksmikp
vslilnvsshsiihkp*vnmnpivstfilhsvtvvmqrdsnnnqmsmrkl*fwmamstmd
i*iqfttvksvpniikpnltfplihmqkvkffwskity*lvskmvvslsp*sqcvavvit
lishstft


Frame B:
---fqcrfl*tilgr*trqtqgmlesprtna*kllptnpiqitiiprhfitnhtnr**nr
yl*fstfpriq*stshe*i*ilsylhssftrlqw*ckeiqtttrcq*esfdfgwqclrwt
fksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinscqrwwfhsllkanvlqws*l
syptllsl


Frame C:
---SNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFKLPSFPDTSLPITQIDDKTG
IFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALILDGNVYDGH
LNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLKPMCCSGHNS
HIPLYFH

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                       1104   0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/                       1104   0.0
SHE117 (SHE117Q) /CSM/SH/SHE1-A/SHE117Q.Seq.d/                       1104   0.0
SHA665 (SHA665Q) /CSM/SH/SHA6-C/SHA665Q.Seq.d/                       1104   0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/                       1104   0.0
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/                       1104   0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/                       1104   0.0
CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/                       1096   0.0
CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/                       1096   0.0
AHE787 (AHE787Q) /CSM/AH/AHE7-D/AHE787Q.Seq.d/                       1092   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BZ622217|BZ622217.1 ig77a07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic cloneig77a07 5', genomic survey sequence.    46   0.82   1
AL132975|AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.    46   0.82   1
AP005892|AP005892.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16.    32   1.6    2
BZ357781|BZ357781.1 SALK_131235.56.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_131235.56.00.x, DNA sequence.    44   3.3    1
BX682233|BX682233.6 Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16.    44   3.3    1
AL844887|AL844887.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   3.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    35   1.7
AF438165_8(AF438165|pid:none) Camelpox virus M-96 from Kazakhsta...    34   2.3
AY698061_1(AY698061|pid:none) Schistosoma mansoni nuclear recept...    34   2.3
EU546237_1(EU546237|pid:none) Simarouba berteroana voucher WT 14...    34   3.0
CP001130_1319(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c...    34   3.0
EU042882_1(EU042882|pid:none) Samadera indica voucher JTH 138 tr...    34   3.0
AM746676_4872(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    34   3.0
AL031745_89(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   3.9
EU042885_1(EU042885|pid:none) Simaba glabra voucher Ratter et al...    33   5.1
CU633865_269(CU633865|pid:none) Podospora anserina genomic DNA c...    33   6.6

 psg: 0.75  gvh: 0.32  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHE117 is cyt

>SHE117Z.Seq
NNNNNNNNNNCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAG
ACACAAGGCATGTTGGAATCTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCA
ATTCAAATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAAC
CGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATA
TGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATT
CAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGG
ACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTA
CTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAAC
TCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAA
CTCTCATATCCCACTCTACTTTCACTT