>SSI469 (SSI469Q) /CSM/SS/SSI4-C/SSI469Q.Seq.d/
XXXXXXXXXXTTAAACATAATATTGAATTATTCTTAAAAGATGGTTTCGTATTCAATGTA
AATTTAATTTCCCAAGAAAGAACTGAAGAAGTTAAAACCCTTGTAAAATATATTTTAGAT
TTAAGAAAGGAAGAGATCGCTGCTCAATCTCGTATTGCTAAAATCACCATCGAAAGTGGT
GGTAAAAAGAATTTATCCATGGGTGCTCCACCACCAACTCATGCTGCCACTCCAGATCTA
ATGGTAACTTTAGTCATTCCACCAGAGAATGAACCAATCCCAGAGATTATAAAAATTCAA
AATGAATTACATAAAATTAGACTCGATATCGAAGAACACAGAATGAATATTTTCAATATT
CAAATTAGAGATCATGTTGAAGTTTTAAAACAAAGATATCCAGAAAAATAATAATCTTTT
TTTAATAATATAATTTTTTTTTTTAAAATAATAATAATAATAATTTCAAATTTTAATTAA
AGAAATAGAGGAAAAAAAAAAAAAAAAATAAGAAAAAGAAAAG

---KHNIELFLKDGFVFNVNLISQERTEEVKTLVKYILDLRKEEIAAQSRIAKITIESGG
KKNLSMGAPPPTHAATPDLMVTLVIPPENEPIPEIIKIQNELHKIRLDIEEHRMNIFNIQ
IRDHVEVLKQRYPEK**sffnniifffkiiiiiisnfn*rnrgkkkkkirkrk

Frame A:
---*t*y*iilkrwfriqckfnfprkn*rs*npckiyfrfkkgrdrcsisyc*nhhrkww
*kefihgcsttnscchsrsngnfshstre*tnprdyknsk*it*n*tryrrtqneyfqys
n*rsc*sfktkisrkiiiff**ynfff*nnnnnnfkf*lkk*rkkkkknkkkk


Frame B:
---KHNIELFLKDGFVFNVNLISQERTEEVKTLVKYILDLRKEEIAAQSRIAKITIESGG
KKNLSMGAPPPTHAATPDLMVTLVIPPENEPIPEIIKIQNELHKIRLDIEEHRMNIFNIQ
IRDHVEVLKQRYPEK**sffnniifffkiiiiiisnfn*rnrgkkkkkirkrk


Frame C:
---niilnys*kmvsysm*i*fpkkelkklkpl*nif*i*erkrsllnlvllkspskvvv
kriypwvlhhqlmlplqi*w*l*sfhqrmnqsqrl*kfkmnyikldsisknte*ifsifk
leimlkf*nkdiqknnnlflii*ffflk*****fqilikeieekkkkk*ekek

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM305 (SSM305Q) /CSM/SS/SSM3-A/SSM305Q.Seq.d/                        805   0.0
SSM150 (SSM150Q) /CSM/SS/SSM1-C/SSM150Q.Seq.d/                        805   0.0
SSK663 (SSK663Q) /CSM/SS/SSK6-C/SSK663Q.Seq.d/                        805   0.0
SSI469 (SSI469Q) /CSM/SS/SSI4-C/SSI469Q.Seq.d/                        805   0.0
SSG551 (SSG551Q) /CSM/SS/SSG5-C/SSG551Q.Seq.d/                        805   0.0
SSF390 (SSF390Q) /CSM/SS/SSF3-D/SSF390Q.Seq.d/                        805   0.0
SSE214 (SSE214Q) /CSM/SS/SSE2-A/SSE214Q.Seq.d/                        805   0.0
SSD372 (SSD372Q) /CSM/SS/SSD3-C/SSD372Q.Seq.d/                        799   0.0
SSA639 (SSA639Q) /CSM/SS/SSA6-B/SSA639Q.Seq.d/                        791   0.0
SSE128 (SSE128Q) /CSM/SS/SSE1-B/SSE128Q.Seq.d/                        781   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF080677|AF080677.1 Dictyostelium discoideum developmental protein PhdA (phdA) gene, complete cds.   733  0.0  4
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    42  0.020  8
AC127972|AC127972.3 Rattus norvegicus clone CH230-304N22, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34  0.11  5
BC048473|BC048473.1 Mus musculus activator of CREM in testis, mRNA (cDNA clone MGC:58227 IMAGE:6770515), complete cds.    48  0.11  1
BU961362|BU961362.1 AGENCOURT_10613664 NIH_MGC_169 Mus musculus cDNA clone IMAGE:6741869 5', mRNA sequence.    48  0.11  1
BU939601|BU939601.1 AGENCOURT_10503569 NIH_MGC_169 Mus musculus cDNA clone IMAGE:6707923 5', mRNA sequence.    48  0.11  1
BU937293|BU937293.1 AGENCOURT_10519240 NIH_MGC_169 Mus musculus cDNA clone IMAGE:6705164 5', mRNA sequence.    48  0.11  1
AF083394|AF083394.1 Mus musculus LIM-only protein ACT mRNA, complete cds.    48  0.11  1
BU936572|BU936572.1 AGENCOURT_10523841 NIH_MGC_169 Mus musculus cDNA clone IMAGE:6704355 5', mRNA sequence.    48  0.11  1
BY100483|BY100483.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:K630132C11, 5' end partial sequence.    48  0.11  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000381_587(CP000381|pid:none) Neisseria meningitidis 053442, c...    33   3.2
AE004969_216(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c...    33   3.2
CP000102_753(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    32   9.3
DQ366719_27(DQ366719|pid:none) Uncultured Prochlorococcus marinu...    32   9.3

 psg: 0.85  gvh: 0.42  alm: 0.44  top: 0.43  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSI469 is cyt

>SSI469Z.Seq
----------TTAAACATAATATTGAATTATTCTTAAAAGATGGTTTCGTATTCAATGTA
AATTTAATTTCCCAAGAAAGAACTGAAGAAGTTAAAACCCTTGTAAAATATATTTTAGAT
TTAAGAAAGGAAGAGATCGCTGCTCAATCTCGTATTGCTAAAATCACCATCGAAAGTGGT
GGTAAAAAGAATTTATCCATGGGTGCTCCACCACCAACTCATGCTGCCACTCCAGATCTA
ATGGTAACTTTAGTCATTCCACCAGAGAATGAACCAATCCCAGAGATTATAAAAATTCAA
AATGAATTACATAAAATTAGACTCGATATCGAAGAACACAGAATGAATATTTTCAATATT
CAAATTAGAGATCATGTTGAAGTTTTAAAACAAAGATATCCAGAAAAATAATAATCTTTT
TTTAATAATATAATTTTTTTTTTTAAAATAATAATAATAATAATTTCAAATTTTAATTAA
AGAAATAGAGGAAAAAAAAAAAAAAAAATAAGAAAAAGAAAAG