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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE306
Library VF
(Link to library)
Clone ID VFE306
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10820-1
Original site URL
Representative seq. ID VFE306P
(Link to Original site)
Representative DNA sequence 
>VFE306 (VFE306Q) /CSM/VF/VFE3-A/VFE306Q.Seq.d/
ATNATTTTCCCATTAAAACAAACAATGTCTTCATCAAGATTAATTAAATGTTTAAGTTCA
AACAATTATATTGTTAGATCTTTCTCAAAATCATCAATTCCAACCACACCAACACCAGAT
TTTCCAGGTGAATATAAAGAACCAATTGTAAAGACACAAATCCCAGGTCCACAATCTAAA
GCTTTAATTGAAAGATTAAATAAACTCCAAGATCCAAGAGCTGCTCATTTCTTTGCTGAT
TATGCAAATTCAAGAGGTAATTATATTTCAGATGTTGATGGTAATATTTTATTAGATTTA
TATTGTCAAATTGCATCAATTCCAATTGGTTATAATAATCCAGAATTAATTAAAGCAGCA
AAATCTGATAGATGGGTATCAGCAATTATTAATCGTCCATCATTGGGTGTACTTXXXXXX
XXXXAACTATGCCACTCCTTACTTCTTCCAAGGCTTAAGAGATATCACCAAGAAACATGG
TGTCTCTATGATCGTCGATGAAGTTCAAACTGGTATGGGTGCCACTGGTAAATTCTGGGC
TCACGAACATTGGAATCTCACCTCTCCACCAGATATTGTCACCTTCTCAAAGAAGATGCA
AGCCGCTGGTTTCTATCATAATTTGGATTACCGTCCATCCGAATCCTATCGTAACTTTAA
CACTTGGATGGGTGATCCAGTTAGAGCTCTCGAATTAGAGGTTGTCATTGGTGAAATCAA
AAAGAATCATCTCCTCGATAATGTTGTCATCACTGGTAACTACCTCAAGGATGGTCTCTT
TGATATTGCCGCTCGTTATCCAGGTTTAATTCAAAATATTAGAGGTGAAGGTACTTTCTT
GGCTATTGATTTCCCAACACCAGCTGAACGTGATCGTGTCATCTCTCACATTCGTTTATT
AGGTGTTGAAATGGGTGGTTGTGGTGAAAGATCAATTCGTTTCCGTCCAATGTTAGTTTG
TCAACCATCTCACATTAATCAATTCCTTAATCGTTTCGNATCAAACAATAAAGAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
XIFPLKQTMSSSRLIKCLSSNNYIVRSFSKSSIPTTPTPDFPGEYKEPIVKTQIPGPQSK
ALIERLNKLQDPRAAHFFADYANSRGNYISDVDGNILLDLYCQIASIPIGYNNPELIKAA
KSDRWVSAIINRPSLGVL---

---NYATPYFFQGLRDITKKHGVSMIVDEVQTGMGATGKFWAHEHWNLTSPPDIVTFSKK
MQAAGFYHNLDYRPSESYRNFNTWMGDPVRALELEVVIGEIKKNHLLDNVVITGNYLKDG
LFDIAARYPGLIQNIRGEGTFLAIDFPTPAERDRVISHIRLLGVEMGGCGERSIRFRPML
VCQPSHINQFLNRFXSNNKE
Translated Amino Acid sequence (All Frames) 
Frame A:
XIFPLKQTMSSSRLIKCLSSNNYIVRSFSKSSIPTTPTPDFPGEYKEPIVKTQIPGPQSK
ALIERLNKLQDPRAAHFFADYANSRGNYISDVDGNILLDLYCQIASIPIGYNNPELIKAA
KSDRWVSAIINRPSLGVL---

---NYATPYFFQGLRDITKKHGVSMIVDEVQTGMGATGKFWAHEHWNLTSPPDIVTFSKK
MQAAGFYHNLDYRPSESYRNFNTWMGDPVRALELEVVIGEIKKNHLLDNVVITGNYLKDG
LFDIAARYPGLIQNIRGEGTFLAIDFPTPAERDRVISHIRLLGVEMGGCGERSIRFRPML
VCQPSHINQFLNRFXSNNKE

Frame B:
xfsh*nkqclhqd*lnv*vqtiilldlsqnhqfqphqhqifqvniknql*rhksqvhnlk
l*lkd*inskiqellisllimqiqeviifqmlmvify*iyivklhqfqlviiiqn*lkqq
nlidgyqqllivhhwvy---

---tmplltsska*eisprnmvsl*ssmkfklvwvplvnsgltnigisplhqilspsqrr
ckplvsiiiwitvhpnpivtltlgwviqlelsn*rlslvkskriissimlsslvttsrmv
slilplviqv*fkilevkvlswllisqhqlnvivssltfvy*vlkwvvvvkdqfvsvqc*
fvnhltlinslivsxqtik

Frame C:
xfpiktnnvfikin*mfkfkqlyc*iflkiinsnhtntrfsr*i*rtnckdtnprsti*s
fn*kik*tprskscsflc*lckfkr*lyfrc*w*yfirfilsncinsnwl**srin*ssk
i**mgisny*ssiigct---

---lchslllprlkryhqetwclydrr*ssnwygchw*ilgsrtleshlstrychllked
asrwfls*fglpsirils*l*hldg*ss*ssrirgchw*nqkesspr*cchhw*lpqgws
l*ycrslsrfnsky*r*ryflgy*fpnts*t*schlshsfirc*ngwlw*kinsfpsnvs
lstish*sip*sfrikq*r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE306 (VFE306Q) /CSM/VF/VFE3-A/VFE306Q.Seq.d/                       1941   0.0
CFI886 (CFI886Q) /CSM/CF/CFI8-D/CFI886Q.Seq.d/                       1152   0.0
CFI372 (CFI372Q) /CSM/CF/CFI3-C/CFI372Q.Seq.d/                       1150   0.0
AFM473 (AFM473Q) /CSM/AF/AFM4-D/AFM473Q.Seq.d/                       1142   0.0
VFL182 (VFL182Q) /CSM/VF/VFL1-D/VFL182Q.Seq.d/                       1138   0.0
VFH721 (VFH721Q) /CSM/VF/VFH7-A/VFH721Q.Seq.d/                       1138   0.0
AFN293 (AFN293Q) /CSM/AF/AFN2-D/AFN293Q.Seq.d/                       1138   0.0
VFI838 (VFI838Q) /CSM/VF/VFI8-B/VFI838Q.Seq.d/                       1122   0.0
AFO851 (AFO851Q) /CSM/AF/AFO8-C/AFO851Q.Seq.d/                       1122   0.0
AFK203 (AFK203Q) /CSM/AF/AFK2-A/AFK203Q.Seq.d/                       1088   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AU210770|AU210770.1 Caenorhabditis elegans cDNA clone:yk764d01 : 3' end, single read.    50  2e-07  3
CB403815|CB403815.1 OSTR013A10_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    50  2e-07  3
BJ104546|BJ104546.1 Caenorhabditis elegans cDNA clone:yk1062h11 : 5' end, single read.    50  3e-07  3
BJ138572|BJ138572.1 Caenorhabditis elegans cDNA clone:yk1137a04 : 3' end, single read.    50  3e-07  3
AU211232|AU211232.1 Caenorhabditis elegans cDNA clone:yk770a05 : 3' end, single read.    50  3e-07  3
BJ151134|BJ151134.1 Caenorhabditis elegans cDNA clone:yk1292a08 : 3' end, single read.    50  4e-07  3
AU218752|AU218752.1 Caenorhabditis elegans cDNA clone:yk868f09 : 3' end, single read.    50  4e-07  3
BJ132006|BJ132006.1 Caenorhabditis elegans cDNA clone:yk1061b05 : 3' end, single read.    50  4e-07  3
AU219140|AU219140.1 Caenorhabditis elegans cDNA clone:yk873g03 : 3' end, single read.    50  1e-06  3
D67296|D67296.1 C.elegans cDNA clone yk49f10 : 5' end, single read.    50  1e-05  2
dna update 2003. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S68116(S68116) 4-aminobutyrate transaminase homolog - smut fungu...   228   3e-58
BC061933_1(BC061933|pid:none) Xenopus laevis hypothetical protei...   213   8e-54
BC074179_1(BC074179|pid:none) Xenopus laevis hypothetical protei...   213   1e-53
(P80147) RecName: Full=4-aminobutyrate aminotransferase, mitocho...   212   1e-53
CR382138_402(CR382138|pid:none) Debaryomyces hansenii strain CBS...   212   2e-53
BC060364_1(BC060364|pid:none) Xenopus laevis hypothetical protei...   211   4e-53
CP000496_152(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   210   5e-53
M84802_1(M84802|pid:none) Sus scrofa 4-aminobutyrate aminotransf...   209   9e-53
U80226_1(U80226|pid:none) Human gamma-aminobutyric acid transami...   209   1e-52
AK293983_1(AK293983|pid:none) Homo sapiens cDNA FLJ56034 complet...   209   1e-52
protein update 2009. 6.18
PSORT 

 psg: 0.68  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.52  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: plasma membrane

>> prediction for VFE306 is mit
5' end seq. ID VFE306F
5' end seq. 
>VFE306F.Seq
ATNATTTTCCCATTAAAACAAACAATGTCTTCATCAAGATTAATTAAATGTTTAAGTTCA
AACAATTATATTGTTAGATCTTTCTCAAAATCATCAATTCCAACCACACCAACACCAGAT
TTTCCAGGTGAATATAAAGAACCAATTGTAAAGACACAAATCCCAGGTCCACAATCTAAA
GCTTTAATTGAAAGATTAAATAAACTCCAAGATCCAAGAGCTGCTCATTTCTTTGCTGAT
TATGCAAATTCAAGAGGTAATTATATTTCAGATGTTGATGGTAATATTTTATTAGATTTA
TATTGTCAAATTGCATCAATTCCAATTGGTTATAATAATCCAGAATTAATTAAAGCAGCA
AAATCTGATAGATGGGTATCAGCAATTATTAATCGTCCATCATTGGGTGTACTT------
----
Length of 5' end seq. 414
3' end seq. ID VFE306Z
3' end seq. 
>VFE306Z.Seq
----------AACTATGCCACTCCTTACTTCTTCCAAGGCTTAAGAGATATCACCAAGAA
ACATGGTGTCTCTATGATCGTCGATGAAGTTCAAACTGGTATGGGTGCCACTGGTAAATT
CTGGGCTCACGAACATTGGAATCTCACCTCTCCACCAGATATTGTCACCTTCTCAAAGAA
GATGCAAGCCGCTGGTTTCTATCATAATTTGGATTACCGTCCATCCGAATCCTATCGTAA
CTTTAACACTTGGATGGGTGATCCAGTTAGAGCTCTCGAATTAGAGGTTGTCATTGGTGA
AATCAAAAAGAATCATCTCCTCGATAATGTTGTCATCACTGGTAACTACCTCAAGGATGG
TCTCTTTGATATTGCCGCTCGTTATCCAGGTTTAATTCAAAATATTAGAGGTGAAGGTAC
TTTCTTGGCTATTGATTTCCCAACACCAGCTGAACGTGATCGTGTCATCTCTCACATTCG
TTTATTAGGTGTTGAAATGGGTGGTTGTGGTGAAAGATCAATTCGTTTCCGTCCAATGTT
AGTTTGTCAACCATCTCACATTAATCAATTCCTTAATCGTTTCGNATCAAACAATAAAGA
A
Length of 3' end seq. 591
Connected seq. ID VFE306P
Connected seq. 
>VFE306P.Seq
ATNATTTTCCCATTAAAACAAACAATGTCTTCATCAAGATTAATTAAATGTTTAAGTTCA
AACAATTATATTGTTAGATCTTTCTCAAAATCATCAATTCCAACCACACCAACACCAGAT
TTTCCAGGTGAATATAAAGAACCAATTGTAAAGACACAAATCCCAGGTCCACAATCTAAA
GCTTTAATTGAAAGATTAAATAAACTCCAAGATCCAAGAGCTGCTCATTTCTTTGCTGAT
TATGCAAATTCAAGAGGTAATTATATTTCAGATGTTGATGGTAATATTTTATTAGATTTA
TATTGTCAAATTGCATCAATTCCAATTGGTTATAATAATCCAGAATTAATTAAAGCAGCA
AAATCTGATAGATGGGTATCAGCAATTATTAATCGTCCATCATTGGGTGTACTT------
----AACTATGCCACTCCTTACTTCTTCCAAGGCTTAAGAGATATCACCAAGAAACATGG
TGTCTCTATGATCGTCGATGAAGTTCAAACTGGTATGGGTGCCACTGGTAAATTCTGGGC
TCACGAACATTGGAATCTCACCTCTCCACCAGATATTGTCACCTTCTCAAAGAAGATGCA
AGCCGCTGGTTTCTATCATAATTTGGATTACCGTCCATCCGAATCCTATCGTAACTTTAA
CACTTGGATGGGTGATCCAGTTAGAGCTCTCGAATTAGAGGTTGTCATTGGTGAAATCAA
AAAGAATCATCTCCTCGATAATGTTGTCATCACTGGTAACTACCTCAAGGATGGTCTCTT
TGATATTGCCGCTCGTTATCCAGGTTTAATTCAAAATATTAGAGGTGAAGGTACTTTCTT
GGCTATTGATTTCCCAACACCAGCTGAACGTGATCGTGTCATCTCTCACATTCGTTTATT
AGGTGTTGAAATGGGTGGTTGTGGTGAAAGATCAATTCGTTTCCGTCCAATGTTAGTTTG
TCAACCATCTCACATTAATCAATTCCTTAATCGTTTCGNATCAAACAATAAAGAA
Length of connected seq. 1005
Full length Seq ID -
Full length Seq. -
Length of full length seq. -