NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ855
Library VS
(Link to library)
Clone ID VSJ855
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07284-1
Original site URL
Representative seq. ID VSJ855P
(Link to Original site)
Representative DNA sequence 
>VSJ855 (VSJ855Q) /CSM/VS/VSJ8-C/VSJ855Q.Seq.d/
CAAAAATATGAAAATATTTAATCTTTTAGTAGTATTACTTTCAATAGTAAATATATCACT
TGGCCAAATCACATTTCAAAAATATGTTGATTTTAATGGTTATAATCAACCAAATTGTGG
TGCATCAACGGAACCATGTAAATCAATTGAATATGTAATTAATCAAATCAAATCATATTC
TTATGAGCAATTTTCAATTGAAATTTTATTGGGTCGTGGAACACATCATTCTTTAACACC
AACCAATTTATATGGTTTAAATATTACAATTGGAGCAGCCAACCCAGGAGAATCGGTTCA
ACTTTTAGCATCATCATCATTAGGTACAGCACAATTCACTGTAGACCATTCAAATTATTA
TGATATTATTCCAACAAATATCGTTTTTAGAGATCTTACTGTTACTTGTGATTTATCATA
CACTTGGAATGGTTTACTTTTACAATCAAATATTAATTCXXXXXXXXXXGTGTAAACTNT
TATCAATTGGTCCAATGTGACTATGGAANATCAAGATTNTATGGTGATTATCAATTCNCT
TCTTACTCTGATTCNTGNCAAGCTAAAATTAATGTTTTATCATTTTGGAANACTAACGCC
AACTTACTTGAAATTATCANATCANATTTAAGTGGNGTTCTCNCCATTGNATTGGTTTTC
GNTACTATGTTCNCCNTTTCAGCTATTGGAAAGTGTTGTANAAGAAAAAGAAAAGCNATT
CNAAAATTAAAAAAGGAAAAAGAAGAAGAAGCTGCAGAAGCAGCAAAATCNCTTTTATCA
ATCAATGATTCTGCATAGAATAAAAAAAATAAAATGNCCAGGAATTTATAAAAATTAAAA
CTAAAATAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
KNMKIFNLLVVLLSIVNISLGQITFQKYVDFNGYNQPNCGASTEPCKSIEYVINQIKSYS
YEQFSIEILLGRGTHHSLTPTNLYGLNITIGAANPGESVQLLASSSLGTAQFTVDHSNYY
DIIPTNIVFRDLTVTCDLSYTWNGLLLQSNIN---

---VNXYQLVQCDYGXSRXYGDYQFXSYSDSXQAKINVLSFWXTNANLLEIIXSXLSGVL
XIXLVFXTMFXXSAIGKCCXRKRKAIXKLKKEKEEEAAEAAKSLLSINDSA*nkknkmxr
nl*klklk*
Translated Amino Acid sequence (All Frames) 
Frame A:
qkyeni*sfssitfnskyitwpnhiskic*f*wl*stklwcingtm*in*icn*snqiif
l*aifn*nfigswntsffntnqfiwfkyynwssqprrigstfsiiiirystihcrpfkll
*yysnkyrf*rsycyl*fiihlewftftiky*f---

---v*txinwsnvtmexqdxmviinslltlixxklklmfyhfgxltptylklsxxi*vxf
splxwfsxlcspfqllesvvxekekxfxn*krkkkkklqkqqnxfyqsmilhrikkikxp
giykn*n*nk

Frame B:
KNMKIFNLLVVLLSIVNISLGQITFQKYVDFNGYNQPNCGASTEPCKSIEYVINQIKSYS
YEQFSIEILLGRGTHHSLTPTNLYGLNITIGAANPGESVQLLASSSLGTAQFTVDHSNYY
DIIPTNIVFRDLTVTCDLSYTWNGLLLQSNIN---

---ckllsigpm*lwxikixw*lsixfll*fxxs*n*cfiilex*rqlt*nyxixfkwxs
xhxigfryyvxxfsywkvlxkkkksxskikkgkrrrscrsskixfinq*fcie*kk*nxq
efikiktki

Frame C:
ki*kylif**yyfq**iyhlakshfknmlilmviinqivvhqrnhvnqlnm*liksnhil
msnfqlkfywvvehiil*hqpiymv*ilqleqptqenrfnf*hhhh*vqhnsl*tiqiim
ilfqqisfleillllviyhtlgmvyfynqili---

---VNXYQLVQCDYGXSRXYGDYQFXSYSDSXQAKINVLSFWXTNANLLEIIXSXLSGVL
XIXLVFXTMFXXSAIGKCCXRKRKAIXKLKKEKEEEAAEAAKSLLSINDSA*nkknkmxr
nl*klklk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ855 (VSJ855Q) /CSM/VS/VSJ8-C/VSJ855Q.Seq.d/                       1235   0.0
VFF124 (VFF124Q) /CSM/VF/VFF1-A/VFF124Q.Seq.d/                        906   0.0
VSA649 (VSA649Q) /CSM/VS/VSA6-C/VSA649Q.Seq.d/                        365   e-100
SSA342 (SSA342Q) /CSM/SS/SSA3-B/SSA342Q.Seq.d/                         46   9e-04
SSA839 (SSA839Q) /CSM/SS/SSA8-B/SSA839Q.Seq.d/                         40   0.054
SLK715 (SLK715Q) /CSM/SL/SLK7-A/SLK715Q.Seq.d/                         40   0.054
SLK568 (SLK568Q) /CSM/SL/SLK5-C/SLK568Q.Seq.d/                         40   0.054
SLK150 (SLK150Q) /CSM/SL/SLK1-C/SLK150Q.Seq.d/                         40   0.054
SLB382 (SLB382Q) /CSM/SL/SLB3-D/SLB382Q.Seq.d/                         40   0.054
SSK507 (SSK507Q) /CSM/SS/SSK5-A/SSK507Q.Seq.d/                         38   0.21
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC014104|AC014104.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***.    50  0.045  1
BE977829|BE977829.1 bs69f09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs69f09 5', mRNA sequence.    50  0.045  1
AC145367|AC145367.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064J09, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    40  0.097  4
AC107217|AC107217.4 Homo sapiens BAC clone RP11-544L19 from 2, complete sequence.    48  0.18  1
AQ761470|AQ761470.1 HS_3206_B2_D08_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3206 Col=16 Row=H, genomic survey sequence.    48  0.18  1
AC137304|AC137304.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    48  0.18  1
AQ148761|AQ148761.1 HS_3136_A1_E07_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3136 Col=13 Row=I, genomic survey sequence.    48  0.18  1
AE010600|AE010600.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 142 of 197 of the complete genome.    46  0.70  1
AC008205|AC008205.7 Drosophila melanogaster, chromosome 3R, region 96A-96B, BAC clone BACR33F18, complete sequence.    50  0.93  3
AE003749|AE003749.3 Drosophila melanogaster chromosome 3R, section 87 of 118 of the complete sequence.    50  1.0  3
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF010143_1(AF010143|pid:none) Campylobacter rectus S-layer prote...    35   3.0
CP001100_1866(CP001100|pid:none) Chloroherpeton thalassium ATCC ...    33   8.6
protein update 2009. 3.25
PSORT 

 psg: 0.96  gvh: 0.71  alm: 0.31  top: 0.33  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.11  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for VSJ855 is exc
5' end seq. ID VSJ855F
5' end seq. 
>VSJ855F.Seq
CAAAAATATGAAAATATTTAATCTTTTAGTAGTATTACTTTCAATAGTAAATATATCACT
TGGCCAAATCACATTTCAAAAATATGTTGATTTTAATGGTTATAATCAACCAAATTGTGG
TGCATCAACGGAACCATGTAAATCAATTGAATATGTAATTAATCAAATCAAATCATATTC
TTATGAGCAATTTTCAATTGAAATTTTATTGGGTCGTGGAACACATCATTCTTTAACACC
AACCAATTTATATGGTTTAAATATTACAATTGGAGCAGCCAACCCAGGAGAATCGGTTCA
ACTTTTAGCATCATCATCATTAGGTACAGCACAATTCACTGTAGACCATTCAAATTATTA
TGATATTATTCCAACAAATATCGTTTTTAGAGATCTTACTGTTACTTGTGATTTATCATA
CACTTGGAATGGTTTACTTTTACAATCAAATATTAATTC----------
Length of 5' end seq. 459
3' end seq. ID VSJ855Z
3' end seq. 
>VSJ855Z.Seq
----------GTGTAAACTNTTATCAATTGGTCCAATGTGACTATGGAANATCAAGATTN
TATGGTGATTATCAATTCNCTTCTTACTCTGATTCNTGNCAAGCTAAAATTAATGTTTTA
TCATTTTGGAANACTAACGCCAACTTACTTGAAATTATCANATCANATTTAAGTGGNGTT
CTCNCCATTGNATTGGTTTTCGNTACTATGTTCNCCNTTTCAGCTATTGGAAAGTGTTGT
ANAAGAAAAAGAAAAGCNATTCNAAAATTAAAAAAGGAAAAAGAAGAAGAAGCTGCAGAA
GCAGCAAAATCNCTTTTATCAATCAATGATTCTGCATAGAATAAAAAAAATAAAATGNCC
AGGAATTTATAAAAATTAAAACTAAAATAAA
Length of 3' end seq. 381
Connected seq. ID VSJ855P
Connected seq. 
>VSJ855P.Seq
CAAAAATATGAAAATATTTAATCTTTTAGTAGTATTACTTTCAATAGTAAATATATCACT
TGGCCAAATCACATTTCAAAAATATGTTGATTTTAATGGTTATAATCAACCAAATTGTGG
TGCATCAACGGAACCATGTAAATCAATTGAATATGTAATTAATCAAATCAAATCATATTC
TTATGAGCAATTTTCAATTGAAATTTTATTGGGTCGTGGAACACATCATTCTTTAACACC
AACCAATTTATATGGTTTAAATATTACAATTGGAGCAGCCAACCCAGGAGAATCGGTTCA
ACTTTTAGCATCATCATCATTAGGTACAGCACAATTCACTGTAGACCATTCAAATTATTA
TGATATTATTCCAACAAATATCGTTTTTAGAGATCTTACTGTTACTTGTGATTTATCATA
CACTTGGAATGGTTTACTTTTACAATCAAATATTAATTC----------GTGTAAACTNT
TATCAATTGGTCCAATGTGACTATGGAANATCAAGATTNTATGGTGATTATCAATTCNCT
TCTTACTCTGATTCNTGNCAAGCTAAAATTAATGTTTTATCATTTTGGAANACTAACGCC
AACTTACTTGAAATTATCANATCANATTTAAGTGGNGTTCTCNCCATTGNATTGGTTTTC
GNTACTATGTTCNCCNTTTCAGCTATTGGAAAGTGTTGTANAAGAAAAAGAAAAGCNATT
CNAAAATTAAAAAAGGAAAAAGAAGAAGAAGCTGCAGAAGCAGCAAAATCNCTTTTATCA
ATCAATGATTCTGCATAGAATAAAAAAAATAAAATGNCCAGGAATTTATAAAAATTAAAA
CTAAAATAAA
Length of connected seq. 840
Full length Seq ID -
Full length Seq. -
Length of full length seq. -