>1rw3A 32 443 156 555 3e-25
gb|AAF64414.1| Pol [equine foamy virus] ref|NP_054716.1| Pol [equine foamy virus]
Length = 400



Score = 36.4 bits (119), Expect = 2.0
Identities = 85/395 (21%), Positives = 164/395 (41%), Gaps = 64/395 (16%)

Query: 980 KLRIVLD--ASSPPGPEPSLNDCLYAGDNLVTPLYGILLRGRIYPYVVVADIEKAFHQVR 1037
+ R+VLD A + P + +C A L L RG+ Y D+ F
Sbjct: 53 RWRMVLDYRAVNKVTPAIATQNCHSAS------LLNTLYRGQ---YKTTLDLANGFWAHP 103

Query: 1038 LQEEFRNATLFLWLKDITKPPTPDNICTYRFTRIPFGVASSPWLLAASILHFLDRNPNPL 1097
+QE + T F W N +Y +T +P G +SP L+ A ++ +L PN
Sbjct: 104 IQESDQWITSFTW-----------NGKSYVWTTLPQGFLNSPALFTADVVDLLKDIPNV- 151

Query: 1098 NQRVRENLYVDNCLIGTFDKSEITEIIKNSKDIFMKMKMNLREYVTNSEEHMAAIEVEDQ 1157
+YVD+ F E +K +F K++ + ++ +++
Sbjct: 152 ------EVYVDDVY---FSNDTEEEHLKTMDLLFQKLQ---------TAGYIVSLKKSKL 193

Query: 1158 AKHRVIKLLGCEWDSHEDIDTLSVALAVLDIDHP-TKRQVASKMAETFDPLGLITPLIVS 1216
+H + +LG + T S +LDI P T +Q+ S + L + +I +
Sbjct: 194 GQH-TVDFLGFQITQTGRGLTDSYKSKLLDITPPNTLKQLQSILGL----LNFARNFIPN 248

Query: 1217 FKRLMQNLWR-NPMKWNDRIPKELLADWKTIQAAFMDTKITVPRRISIFDDPPEEIQLLM 1275
+ L+ L++ P+ IP W+T + A + I ++ +++L++
Sbjct: 249 YSELITPLYQLIPLAKGIYIP------WETKHTAILQKIIKELNASENLEQRKPDVELIV 302

Query: 1276 FSDASTDIYATAAYVQYSYK-SRKPVT--RLLTSKSKIRSAKNE--MWTIPKLELLGIEC 1330
+ TA Y++++ K S KP+ ++ SK++++ E M TI K L +
Sbjct: 303 ----KVHVSPTAGYIKFANKGSIKPIAYHNVVFSKTELKFTITEKVMTTIHKALLKAFDL 358

Query: 1331 SSNLARTIIAELGTLATKIKKVRLFTDSACALYWI 1365
+ + + + ++ T+I+K L A ++ W+
Sbjct: 359 AMGQPIWVYSPIHSM-TRIQKTPLTERKALSIRWL 392