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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFM661
Library VF
(Link to library)
Clone ID VFM661
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16162-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFM661 (VFM661Q) /CSM/VF/VFM6-C/VFM661Q.Seq.d/
GGCTATAGCAAGGATTTTTTCAGTGTGTAAAAATTTTTTCGTTTTCTTTAGTTTGAAATA
TATATAAAAAAAATGGATAAATCCAAAAATTTATTTGATCTTCTCCAAGACGACGAAGAG
GTTGAAAAGAAACCAACCACCAAAAGCACCCAAGCTGCTGCTGCACCAGTTGCTGCCAAA
AAACCAGTTGCACCAAAAACTGAAAACAAAGTTGAAAACAGATCACCAAAATTAGGAGGT
CAATCAAAACCAAAGAGAGTCAACAATGGTGAACAACAAGTTGCAACCTCTGAAGAACGT
CAAAACACCAAGAGAGACAGCAAGAGCTATCCAAAACACCAACCACGTACTGATGCCACT
GGTAACATTCGTAACCGTCAATTCGATCGTAAATCAGGTACTGGTCGTCCACACAATGAA
AACAAGAAAGGTGGTGCTGGTCAAGGTAACTGGGGTAAAGAAGGTTCAGTCGATGCTGAA
ACCAACGTTGCCACTGTCACCCCAACTGAAGGTGAAAAAGAATCAACTGAACCAGTCGTC
GCTGCCCCAGTTGAAGACAAAACCTTAACCCTCGGTGAATACCTTAAACAACAAGGTTCA
GTCACCCTCGAAGCACCAAAACTCCGTGTTGCTGGTGAAGGTGAAACXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
gyskdffsv*kffrfl*FEIYIKKMDKSKNLFDLLQDDEEVEKKPTTKSTQAAAAPVAAK
KPVAPKTENKVENRSPKLGGQSKPKRVNNGEQQVATSEERQNTKRDSKSYPKHQPRTDAT
GNIRNRQFDRKSGTGRPHNENKKGGAGQGNWGKEGSVDAETNVATVTPTEGEKESTEPVV
AAPVEDKTLTLGEYLKQQGSVTLEAPKLRVAGEGE---
Translated Amino Acid sequence (All Frames) 
Frame A:
gyskdffsv*kffrfl*FEIYIKKMDKSKNLFDLLQDDEEVEKKPTTKSTQAAAAPVAAK
KPVAPKTENKVENRSPKLGGQSKPKRVNNGEQQVATSEERQNTKRDSKSYPKHQPRTDAT
GNIRNRQFDRKSGTGRPHNENKKGGAGQGNWGKEGSVDAETNVATVTPTEGEKESTEPVV
AAPVEDKTLTLGEYLKQQGSVTLEAPKLRVAGEGE---


Frame B:
aiarifsvcknffvffslkyi*kkwinpkiylifskttkrlkrnqppkapklllhqllpk
nqlhqklktklktdhqn*evnqnqrestmvnnklqplknvktpretaraiqntnhvlmpl
vtfvtvnsivnqvlvvhtmktrkvvlvkvtgvkkvqsmlkptlplspqlkvkknqlnqss
lpqlktkp*psvntlnnkvqspskhqnsvllvkvk---


Frame C:
l*qgffqcvkifsfslv*niykkng*iqkfi*ssprrrrg*ketnhqkhpsccctsccqk
tsctkn*kqs*kqitkirrsiktkesqqw*ttscnl*rtskhqerqqelsktptty*chw
*hs*psirs*irywsstq*kqerwcwsr*lg*rrfsrc*nqrchchpn*r*krin*tsrr
cps*rqnlnpr*ip*ttrfshprstktpccw*r*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG187 (VSG187Q) /CSM/VS/VSG1-D/VSG187Q.Seq.d/                        825   0.0
VHH487 (VHH487Q) /CSM/VH/VHH4-D/VHH487Q.Seq.d/                        825   0.0
VFM661 (VFM661Q) /CSM/VF/VFM6-C/VFM661Q.Seq.d/                        825   0.0
VSD459 (VSD459Q) /CSM/VS/VSD4-C/VSD459Q.Seq.d/                        819   0.0
VFG327 (VFG327Q) /CSM/VF/VFG3-B/VFG327Q.Seq.d/                        815   0.0
FC-AV07 (FC-AV07Q) /CSM/FC/FC-AV/FC-AV07Q.Seq.d/                      811   0.0
FC-AK04 (FC-AK04Q) /CSM/FC/FC-AK/FC-AK04Q.Seq.d/                      811   0.0
FC-189 (FC-189Q) /CSM/CG/CG-FC/FC-189Q.Seq.d/                         811   0.0
VFO696 (VFO696Q) /CSM/VF/VFO6-D/VFO696Q.Seq.d/                        807   0.0
VSG475 (VSG475Q) /CSM/VS/VSG4-D/VSG475Q.Seq.d/                        783   0.0
own update 2002.12.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ416495) Dictyostelium discoideum cDNA clone:ddv26i16, 5' ...   825   0.0    3
(BJ422443) Dictyostelium discoideum cDNA clone:ddv45n22, 5' ...   825   0.0    3
(C22779) Dictyostelium discoideum gamete cDNA, clone FC-AK04.     480   0.0    3
(C24344) Dictyostelium discoideum gamete cDNA, clone FC-AV07.     509   0.0    3
(AU264067) Dictyostelium discoideum vegetative cDNA clone:VS...   674   0.0    3
(AU265744) Dictyostelium discoideum vegetative cDNA clone:VS...   724   0.0    3
(BJ417546) Dictyostelium discoideum cDNA clone:ddv30o24, 5' ...   646   0.0    3
(AU266238) Dictyostelium discoideum vegetative cDNA clone:VS...   500   0.0    3
(BJ431225) Dictyostelium discoideum cDNA clone:ddv13f07, 3' ...   815   0.0    2
(AU266543) Dictyostelium discoideum vegetative cDNA clone:VS...   500   0.0    5
dna update 2009. 4.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954203_181(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    57   5e-07
AB236828_1(AB236828|pid:none) Trifolium pratense RNA for putativ...    51   3e-05
AB236752_1(AB236752|pid:none) Trifolium pratense RNA for putativ...    51   3e-05
AJ313093_1(AJ313093|pid:none) Beta vulgaris mRNA for salt tolera...    50   4e-05
AE014297_3870(AE014297|pid:none) Drosophila melanogaster chromos...    50   8e-05
BT044257_1(BT044257|pid:none) Drosophila melanogaster FI06040 fu...    50   8e-05
AM478164_1(AM478164|pid:none) Vitis vinifera contig VV78X271210....    49   1e-04
AC183495_41(AC183495|pid:none) Brassica oleracea Contig A, compl...    49   2e-04
AB236845_1(AB236845|pid:none) Trifolium pratense RNA for hypothe...    48   2e-04
AC183493_33(AC183493|pid:none) Brassica oleracea Contig B, compl...    48   2e-04
protein update 2009. 6.24
PSORT 

 psg: 0.65  gvh: 0.31  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VFM661 is cyt
5' end seq. ID VFM661F
5' end seq. 
>VFM661F.Seq
GGCTATAGCAAGGATTTTTTCAGTGTGTAAAAATTTTTTCGTTTTCTTTAGTTTGAAATA
TATATAAAAAAAATGGATAAATCCAAAAATTTATTTGATCTTCTCCAAGACGACGAAGAG
GTTGAAAAGAAACCAACCACCAAAAGCACCCAAGCTGCTGCTGCACCAGTTGCTGCCAAA
AAACCAGTTGCACCAAAAACTGAAAACAAAGTTGAAAACAGATCACCAAAATTAGGAGGT
CAATCAAAACCAAAGAGAGTCAACAATGGTGAACAACAAGTTGCAACCTCTGAAGAACGT
CAAAACACCAAGAGAGACAGCAAGAGCTATCCAAAACACCAACCACGTACTGATGCCACT
GGTAACATTCGTAACCGTCAATTCGATCGTAAATCAGGTACTGGTCGTCCACACAATGAA
AACAAGAAAGGTGGTGCTGGTCAAGGTAACTGGGGTAAAGAAGGTTCAGTCGATGCTGAA
ACCAACGTTGCCACTGTCACCCCAACTGAAGGTGAAAAAGAATCAACTGAACCAGTCGTC
GCTGCCCCAGTTGAAGACAAAACCTTAACCCTCGGTGAATACCTTAAACAACAAGGTTCA
GTCACCCTCGAAGCACCAAAACTCCGTGTTGCTGGTGAAGGTGAAACNNNNNNNNNN
Length of 5' end seq. 657
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -