BP912820
Clone id YMU001_000023_C05
Library
Length 378
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AAAGGATCAGCAATGATTGATATCACAGCAATAACCCTTTGGCCAGGAGAATGCAATACC
AGTTGTCGTTTTCAACTTAAATGAACCTGGAAACATGTCCAAGGCTGTAAGTGGAGAACG
GATAGGCACCCTTATTGATCAGACGGGGCCTGCACCTTTATATTAATGAAATTAATTATT
TCTAGTTTCCTGGAATAGATGGGGCCCAAATAACGGCTGCATTTCAAATCCAAAGCATGC
CAACCTTGGTAAAGCGGACGTTGCAGCAAGATGTATACTACATCTATTGGCATTTGCCAT
GAATTGGTCTGTGCTCGTGGCTCTTCACGCCGGCCTCAGTTTTGACATAGACGGTTTTGT
ACATAAGATGGGCGAATC
■■Homology search results ■■ -
sp_hit_id Q88VJ6
Definition sp|Q88VJ6|PYRH_LACPL Uridylate kinase OS=Lactobacillus plantarum
Align length 30
Score (bit) 48.1
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912820|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C05.
(378 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q88VJ6|PYRH_LACPL Uridylate kinase OS=Lactobacillus plantarum... 48 1e-05
sp|A3DE57|PYRH_CLOTH Uridylate kinase OS=Clostridium thermocellu... 48 2e-05
sp|Q7VD61|PYRH_PROMA Uridylate kinase OS=Prochlorococcus marinus... 47 2e-05
sp|A0LXJ4|PYRH_GRAFK Uridylate kinase OS=Gramella forsetii (stra... 46 7e-05
sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (stra... 45 1e-04
sp|Q74IR8|PYRH_LACJO Uridylate kinase OS=Lactobacillus johnsonii... 45 1e-04
sp|Q044C8|PYRH_LACGA Uridylate kinase OS=Lactobacillus gasseri (... 45 1e-04
sp|Q1IV36|PYRH_ACIBL Uridylate kinase OS=Acidobacteria bacterium... 45 1e-04
sp|Q0I8L5|PYRH_SYNS3 Uridylate kinase OS=Synechococcus sp. (stra... 44 2e-04
sp|Q46GQ4|PYRH_PROMT Uridylate kinase OS=Prochlorococcus marinus... 44 2e-04
sp|A2C0Y1|PYRH_PROM1 Uridylate kinase OS=Prochlorococcus marinus... 44 2e-04
sp|Q03FT4|PYRH_PEDPA Uridylate kinase OS=Pediococcus pentosaceus... 44 2e-04
sp|Q038L4|PYRH_LACC3 Uridylate kinase OS=Lactobacillus casei (st... 44 2e-04
sp|Q4JV20|PYRH_CORJK Uridylate kinase OS=Corynebacterium jeikeiu... 44 2e-04
sp|Q3AQ27|PYRH_CHLCH Uridylate kinase OS=Chlorobium chlorochroma... 44 2e-04
sp|Q10Y48|PYRH_TRIEI Uridylate kinase OS=Trichodesmium erythraeu... 44 2e-04
sp|Q8VS53|PYRH_LACRE Uridylate kinase OS=Lactobacillus reuteri G... 44 2e-04
sp|A0LV52|PYRH_ACIC1 Uridylate kinase OS=Acidothermus cellulolyt... 44 2e-04
sp|Q3AV98|PYRH_SYNS9 Uridylate kinase OS=Synechococcus sp. (stra... 44 3e-04
sp|P59004|PYRH_CORGL Uridylate kinase OS=Corynebacterium glutami... 44 3e-04
sp|A4QF30|PYRH_CORGB Uridylate kinase OS=Corynebacterium glutami... 44 3e-04
sp|Q895L0|PYRH_CLOTE Uridylate kinase OS=Clostridium tetani GN=p... 44 3e-04
sp|Q3ALP7|PYRH_SYNSC Uridylate kinase OS=Synechococcus sp. (stra... 43 4e-04
sp|Q7U5F5|PYRH_SYNPX Uridylate kinase OS=Synechococcus sp. (stra... 43 4e-04
sp|O69913|PYRH_STRCO Uridylate kinase OS=Streptomyces coelicolor... 43 4e-04
sp|Q11XK2|PYRH_CYTH3 Uridylate kinase OS=Cytophaga hutchinsonii ... 43 4e-04
sp|Q7V6C2|PYRH_PROMM Uridylate kinase OS=Prochlorococcus marinus... 43 6e-04
sp|A2C7Q3|PYRH_PROM3 Uridylate kinase OS=Prochlorococcus marinus... 43 6e-04
sp|Q3B5T8|PYRH_PELLD Uridylate kinase OS=Pelodictyon luteolum (s... 43 6e-04
sp|Q02WC4|PYRH_LACLS Uridylate kinase OS=Lactococcus lactis subs... 43 6e-04

>sp|Q88VJ6|PYRH_LACPL Uridylate kinase OS=Lactobacillus plantarum
GN=pyrH PE=3 SV=1
Length = 240

Score = 48.1 bits (113), Expect = 1e-05
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2

Query: 47 ENAIPVVVFNLNEPGNMSKAVSGERIGTLI 136
+N IPVVVFNLNEPGN+ K V+GE IGT +
Sbjct: 208 DNDIPVVVFNLNEPGNIRKVVAGEHIGTTV 237


>sp|A3DE57|PYRH_CLOTH Uridylate kinase OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=pyrH PE=3 SV=1
Length = 235

Score = 47.8 bits (112), Expect = 2e-05
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLI 136
++N IP++VF LNEPGN+ KAV GE+IGT++
Sbjct: 204 KDNNIPIIVFGLNEPGNIVKAVMGEKIGTIV 234


>sp|Q7VD61|PYRH_PROMA Uridylate kinase OS=Prochlorococcus marinus
GN=pyrH PE=3 SV=1
Length = 237

Score = 47.4 bits (111), Expect = 2e-05
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
++N IP+VVFN+ +PGN++KAV+GE+IG+ I +G
Sbjct: 203 KDNKIPIVVFNIFQPGNINKAVAGEKIGSRISNSG 237


>sp|A0LXJ4|PYRH_GRAFK Uridylate kinase OS=Gramella forsetii (strain
KT0803) GN=pyrH PE=3 SV=1
Length = 235

Score = 45.8 bits (107), Expect = 7e-05
Identities = 16/32 (50%), Positives = 27/32 (84%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLID 139
QEN +P++VF++N+PGN+ K +GER+GT ++
Sbjct: 203 QENELPIIVFDMNKPGNLLKVATGERVGTKVN 234


>sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=pyrH PE=3 SV=1
Length = 254

Score = 45.1 bits (105), Expect = 1e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTGP 151
+EN +P+VVF+L PGN+ + V GE IGT I QT P
Sbjct: 204 KENQLPIVVFDLTTPGNIYRVVQGEPIGTWIGQTTP 239


>sp|Q74IR8|PYRH_LACJO Uridylate kinase OS=Lactobacillus johnsonii
GN=pyrH PE=3 SV=1
Length = 241

Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +2

Query: 47 ENAIPVVVFNLNEPGNMSKAVSGERIGTLI 136
+N IP+VVFN+N+PGN+ K V GE IGT+I
Sbjct: 208 DNNIPLVVFNVNKPGNIKKVVMGENIGTVI 237


>sp|Q044C8|PYRH_LACGA Uridylate kinase OS=Lactobacillus gasseri
(strain ATCC 33323 / DSM 20243) GN=pyrH PE=3 SV=1
Length = 241

Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +2

Query: 47 ENAIPVVVFNLNEPGNMSKAVSGERIGTLI 136
+N IP+VVFN+N+PGN+ K V GE IGT+I
Sbjct: 208 DNNIPLVVFNVNKPGNIKKVVMGENIGTVI 237


>sp|Q1IV36|PYRH_ACIBL Uridylate kinase OS=Acidobacteria bacterium
(strain Ellin345) GN=pyrH PE=3 SV=1
Length = 239

Score = 45.1 bits (105), Expect = 1e-04
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLI 136
QEN +P+VVFNLNE GN+ + V GE +G+L+
Sbjct: 207 QENRLPIVVFNLNERGNIQRVVMGEAVGSLV 237


>sp|Q0I8L5|PYRH_SYNS3 Uridylate kinase OS=Synechococcus sp. (strain
CC9311) GN=pyrH PE=3 SV=1
Length = 235

Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLI 136
++N IP+VVFNL EPGN+ KAV+GE IG+ I
Sbjct: 203 KDNNIPIVVFNLFEPGNIGKAVAGEPIGSRI 233


>sp|Q46GQ4|PYRH_PROMT Uridylate kinase OS=Prochlorococcus marinus
(strain NATL2A) GN=pyrH PE=3 SV=1
Length = 237

Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQT 145
++N IP+VVFN+ +PGN++KA+SGE IG+ I +
Sbjct: 203 KDNKIPIVVFNIFQPGNIAKAISGEPIGSRISNS 236


tr_hit_id A7UQU8
Definition tr|A7UQU8|A7UQU8_MEDTR Homeodomain-like; Uridylate kinase OS=Medicago truncatula
Align length 37
Score (bit) 60.1
E-value 5.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912820|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C05.
(378 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7UQU8|A7UQU8_MEDTR Homeodomain-like; Uridylate kinase OS=Med... 60 5e-08
tr|A7PPM7|A7PPM7_VITVI Chromosome chr8 scaffold_23, whole genome... 58 2e-07
tr|A9TIY7|A9TIY7_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-07
tr|Q7XLY5|Q7XLY5_ORYSA OSJNBa0042I15.5 protein OS=Oryza sativa G... 57 6e-07
tr|Q0JDG0|Q0JDG0_ORYSJ Os04g0405800 protein OS=Oryza sativa subs... 57 6e-07
tr|Q01L58|Q01L58_ORYSA OSIGBa0142C11.1 protein OS=Oryza sativa G... 57 6e-07
tr|A3ATK4|A3ATK4_ORYSJ Putative uncharacterized protein OS=Oryza... 57 6e-07
tr|B7FL24|B7FL24_MEDTR Putative uncharacterized protein OS=Medic... 56 1e-06
tr|Q9LSA9|Q9LSA9_ARATH Similarity to uridylate kinase (Putative ... 55 1e-06
tr|A9RI10|A9RI10_PHYPA Predicted protein (Fragment) OS=Physcomit... 54 2e-06
tr|A7QBK5|A7QBK5_VITVI Chromosome chr13 scaffold_74, whole genom... 54 4e-06
tr|Q94JR1|Q94JR1_ARATH AT3g10030/T22K18_15 OS=Arabidopsis thalia... 52 1e-05
tr|B6TC37|B6TC37_MAIZE Uridylate kinase OS=Zea mays PE=2 SV=1 51 3e-05
tr|B4FSB1|B4FSB1_MAIZE Putative uncharacterized protein OS=Zea m... 51 3e-05
tr|Q5JJV9|Q5JJV9_ORYSJ cDNA clone:001-039-E08, full insert seque... 50 7e-05
tr|B8A9M2|B8A9M2_ORYSI Putative uncharacterized protein OS=Oryza... 50 7e-05
tr|A3A1U8|A3A1U8_ORYSJ Putative uncharacterized protein OS=Oryza... 50 7e-05
tr|B4FLT1|B4FLT1_MAIZE Putative uncharacterized protein OS=Zea m... 49 2e-04
tr|A7QB90|A7QB90_VITVI Chromosome chr4 scaffold_73, whole genome... 47 4e-04
tr|A8UET0|A8UET0_9FLAO Uridylate kinase OS=Flavobacteriales bact... 47 5e-04
tr|B2V4F6|B2V4F6_CLOBA UMP kinase OS=Clostridium botulinum (stra... 46 0.001
tr|B2A382|B2A382_NATTJ Uridylate kinase OS=Natranaerobius thermo... 46 0.001
tr|B1I2K2|B1I2K2_DESAP Uridylate kinase OS=Desulforudis audaxvia... 46 0.001
tr|A3U6N3|A3U6N3_9FLAO Uridylate kinase OS=Croceibacter atlantic... 46 0.001
tr|A4CGD6|A4CGD6_9FLAO Uridylate kinase OS=Robiginitalea biforma... 45 0.001
tr|A1ZLT1|A1ZLT1_9SPHI Uridylate kinase OS=Microscilla marina AT... 45 0.001
tr|B7DMI6|B7DMI6_9BACL Uridylate kinase OS=Alicyclobacillus acid... 45 0.002
tr|A9DP10|A9DP10_9FLAO Uridylate kinase OS=Kordia algicida OT-1 ... 45 0.002
tr|B2TJ42|B2TJ42_CLOBB UMP kinase OS=Clostridium botulinum (stra... 45 0.002
tr|B3WES6|B3WES6_LACCB Uridylate kinase (UK) (Uridine monophosph... 44 0.003

>tr|A7UQU8|A7UQU8_MEDTR Homeodomain-like; Uridylate kinase
OS=Medicago truncatula GN=MtrDRAFT_AC139525g31v2 PE=4
SV=1
Length = 512

Score = 60.1 bits (144), Expect = 5e-08
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +2

Query: 38 FGQENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
F +ENAIPVVVFNL PGN+SKA+ GE++GTLIDQTG
Sbjct: 473 FCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTG 509


>tr|A7PPM7|A7PPM7_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021708001
PE=4 SV=1
Length = 574

Score = 58.2 bits (139), Expect = 2e-07
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +2

Query: 38 FGQENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
F +EN IPVVVFNL EPGN+S+A+ G+++GTLIDQTG
Sbjct: 535 FCEENRIPVVVFNLLEPGNISRALCGDQVGTLIDQTG 571


>tr|A9TIY7|A9TIY7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_60371 PE=4 SV=1
Length = 252

Score = 55.5 bits (132), Expect(2) = 2e-07
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLID 139
QEN IPVVVFNL++ GN+SKA+SGERIGTLID
Sbjct: 213 QENCIPVVVFNLSKAGNISKALSGERIGTLID 244



Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1

Query: 1 KGSAMIDITAITLWPGEC 54
KG +++DITAITL C
Sbjct: 199 KGLSVMDITAITLCQENC 216


>tr|Q7XLY5|Q7XLY5_ORYSA OSJNBa0042I15.5 protein OS=Oryza sativa
GN=OSJNBa0042I15.5 PE=4 SV=3
Length = 582

Score = 56.6 bits (135), Expect = 6e-07
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
QEN IPVV+FN+ EPGN+SKA+ G+++GTL+DQ+G
Sbjct: 545 QENNIPVVIFNMLEPGNISKAICGDQVGTLVDQSG 579


>tr|Q0JDG0|Q0JDG0_ORYSJ Os04g0405800 protein OS=Oryza sativa subsp.
japonica GN=Os04g0405800 PE=4 SV=1
Length = 301

Score = 56.6 bits (135), Expect = 6e-07
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
QEN IPVV+FN+ EPGN+SKA+ G+++GTL+DQ+G
Sbjct: 264 QENNIPVVIFNMLEPGNISKAICGDQVGTLVDQSG 298


>tr|Q01L58|Q01L58_ORYSA OSIGBa0142C11.1 protein OS=Oryza sativa
GN=OSIGBa0142C11.1 PE=4 SV=1
Length = 532

Score = 56.6 bits (135), Expect = 6e-07
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
QEN IPVV+FN+ EPGN+SKA+ G+++GTL+DQ+G
Sbjct: 495 QENNIPVVIFNMLEPGNISKAICGDQVGTLVDQSG 529


>tr|A3ATK4|A3ATK4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_014126 PE=4 SV=1
Length = 520

Score = 56.6 bits (135), Expect = 6e-07
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
QEN IPVV+FN+ EPGN+SKA+ G+++GTL+DQ+G
Sbjct: 483 QENNIPVVIFNMLEPGNISKAICGDQVGTLVDQSG 517


>tr|B7FL24|B7FL24_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 324

Score = 55.8 bits (133), Expect = 1e-06
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQT 145
QEN IPVVVFNLN+PGN+ KA+ GER+GTLI T
Sbjct: 283 QENNIPVVVFNLNKPGNIEKAIKGERVGTLIGAT 316


>tr|Q9LSA9|Q9LSA9_ARATH Similarity to uridylate kinase (Putative
uridylate kinase) OS=Arabidopsis thaliana GN=At3g18680
PE=2 SV=1
Length = 339

Score = 55.5 bits (132), Expect = 1e-06
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQT 145
QEN IPVVVFNL+EPGN++KA+ GER+GTLI T
Sbjct: 297 QENNIPVVVFNLSEPGNIAKAIKGERVGTLIGGT 330


>tr|A9RI10|A9RI10_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_114491 PE=4 SV=1
Length = 245

Score = 53.5 bits (127), Expect(2) = 2e-06
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +2

Query: 44 QENAIPVVVFNLNEPGNMSKAVSGERIGTLIDQTG 148
QEN IPVVVFNL++ GN+SKA+SG RIGTLID G
Sbjct: 205 QENRIPVVVFNLSKAGNISKALSGARIGTLIDGYG 239



Score = 21.6 bits (44), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1

Query: 1 KGSAMIDITAITL 39
KG +++DITAITL
Sbjct: 191 KGLSVMDITAITL 203