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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913903
Clone id YMU001_000037_F06
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTGTTTAGCTGTAAAGTATTAGAATTCCATAACCAGCAATACTTAATCTTCTTTACAA
GTGAATTACTTAAACTAAGGCTGCTGTTTTAAGGTACTGCAATTTGTCTTCATGGTTATG
CTATCAATCAACATGGCAAAAGAATCAAGTGATCTTATAAAAGCCCAAGCACCCCTGAAT
TACGAAAGGGGTCATGGATTAACTACATACTATGATAGTGTGCAGTAAAAATATTAATAT
GATACATGTACACAAGCTTCATGAGCAGGTTTGCAGGTGCAATTTTCTCTAACACCATCA
GGGCCATTTACCTTCAACATCACCGAGTATTACCTGTGATCTTCGTCTTGTGAGGACTGA
CAATTACGGTGTCCAACTGTTGGCAAGCAACAATGGTCTTCACATGCTCAAATTCATCTC
CTGCTATAGCACTAAAGACATCATAAAGACTGTTAATCTTAGGCCGCCGTGTTTCTGGTA
GGCGACTAGTCTGGAACTCATCATACATGTAAAGGTCTTCGCTTTCATAATAATCCACAG
CTACTGGT
■■Homology search results ■■ -
sp_hit_id Q56X52
Definition sp|Q56X52|AOX4_ARATH Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana
Align length 65
Score (bit) 78.2
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913903|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F06.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q56X52|AOX4_ARATH Alternative oxidase 4, chloroplastic/chromo...    78   2e-14
sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattu...    31   3.4  
sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus...    31   3.4  
sp|Q29MB2|KI26L_DROPS Kinesin-like protein GA13060 OS=Drosophila...    31   3.4  
sp|Q1RIS9|SYFA_RICBR Phenylalanyl-tRNA synthetase alpha chain OS...    31   4.5  
sp|A8GWH2|SYFA_RICB8 Phenylalanyl-tRNA synthetase alpha chain OS...    31   4.5  
sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Hom...    31   4.5  

>sp|Q56X52|AOX4_ARATH Alternative oxidase 4,
           chloroplastic/chromoplastic OS=Arabidopsis thaliana
           GN=AOX4 PE=1 SV=2
          Length = 351

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDTV 365
           +AV YY   DLY++DEFQTSR P TRRP I +LYDVF  I  DE EH KT+ ACQ L + 
Sbjct: 253 IAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEHCKTMRACQTLGS- 311

Query: 364 IVSPH 350
           + SPH
Sbjct: 312 LRSPH 316


>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus
           norvegicus GN=March11 PE=1 SV=1
          Length = 398

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 23/96 (23%), Positives = 43/96 (44%)
 Frame = +2

Query: 245 HVHKLHEQVCRCNFL*HHQGHLPSTSPSITCDLRLVRTDNYGVQLLASNNGLHMLKFISC 424
           H H+ H+ +C+  F    QG L +      CD  +  T    +    S  G    + + C
Sbjct: 157 HQHQHHQPICKICFQGAEQGELLN---PCRCDGSVRYTHQLCLLKWISERGSWTCE-LCC 212

Query: 425 YSTKDIIKTVNLRPPCFW*ATSLELIIHVKVFAFII 532
           Y  +  +  + ++ PC W + S+ L+  V++ A I+
Sbjct: 213 Y--RYHVTAIKMKQPCQWQSISITLVEKVQMIAVIL 246


>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus
           musculus GN=March11 PE=2 SV=2
          Length = 400

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 23/96 (23%), Positives = 43/96 (44%)
 Frame = +2

Query: 245 HVHKLHEQVCRCNFL*HHQGHLPSTSPSITCDLRLVRTDNYGVQLLASNNGLHMLKFISC 424
           H H+ H+ +C+  F    QG L +      CD  +  T    +    S  G    + + C
Sbjct: 159 HQHQHHQPICKICFQGAEQGELLN---PCRCDGSVRYTHQLCLLKWISERGSWTCE-LCC 214

Query: 425 YSTKDIIKTVNLRPPCFW*ATSLELIIHVKVFAFII 532
           Y  +  +  + ++ PC W + S+ L+  V++ A I+
Sbjct: 215 Y--RYHVTAIKMKQPCQWQSISITLVEKVQMIAVIL 248


>sp|Q29MB2|KI26L_DROPS Kinesin-like protein GA13060 OS=Drosophila
            pseudoobscura pseudoobscura GN=GA13060 PE=3 SV=3
          Length = 1171

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 197  D*LHTMIVCSKNINMIHVHKLHEQVCRCNFL*H-HQGHLPSTSPSITCDLRLVRTDNYGV 373
            D LH M+  S++++   +H+      R +   H HQ H PS+  SI C L++   +    
Sbjct: 778  DSLHRML--SRHVSREQLHEADLVASRASSSHHQHQHHRPSSQRSIDCGLQVTEEEIART 835

Query: 374  QLLASNNGLHMLKFISCYSTKDIIKTVNL 460
                  + +H L  +S       + + N+
Sbjct: 836  MAREQEHSMHPLSALSHCDNLSFVSSFNM 864


>sp|Q1RIS9|SYFA_RICBR Phenylalanyl-tRNA synthetase alpha chain
           OS=Rickettsia bellii (strain RML369-C) GN=pheS PE=3 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +2

Query: 215 IVCSKNINMIHVHKLHEQVCRCNF------L*HHQGHLPSTSPSITCDLRLVRTDNY 367
           +V  K+INM H+  +  +  RC F      L       P T PS   D+R+ +TD +
Sbjct: 217 LVIDKDINMGHLKYVITEFIRCFFENSNIELRFRPSFFPFTEPSAEVDIRMSKTDKW 273


>sp|A8GWH2|SYFA_RICB8 Phenylalanyl-tRNA synthetase alpha chain
           OS=Rickettsia bellii (strain OSU 85-389) GN=pheS PE=3
           SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +2

Query: 215 IVCSKNINMIHVHKLHEQVCRCNF------L*HHQGHLPSTSPSITCDLRLVRTDNY 367
           +V  K+INM H+  +  +  RC F      L       P T PS   D+R+ +TD +
Sbjct: 217 LVIDKDINMGHLKYVITEFIRCFFENSNIELRFRPSFFPFTEPSAEVDIRMSKTDKW 273


>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo
           sapiens GN=MARCH11 PE=2 SV=3
          Length = 402

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 24/96 (25%), Positives = 42/96 (43%)
 Frame = +2

Query: 245 HVHKLHEQVCRCNFL*HHQGHLPSTSPSITCDLRLVRTDNYGVQLLASNNGLHMLKFISC 424
           H H+ H+ +C+  F    QG L +      CD  +  T    +    S  G    + + C
Sbjct: 161 HQHQHHQPICKICFQGAEQGELLN---PCRCDGSVRYTHQLCLLKWISERGSWTCE-LCC 216

Query: 425 YSTKDIIKTVNLRPPCFW*ATSLELIIHVKVFAFII 532
           Y    I   + ++ PC W + S+ L+  V++ A I+
Sbjct: 217 YRYHVI--AIKMKQPCQWQSISITLVEKVQMIAVIL 250
tr_hit_id A9TEL5
Definition tr|A9TEL5|A9TEL5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 111.0
E-value 2.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913903|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F06.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TEL5|A9TEL5_PHYPA Predicted protein OS=Physcomitrella paten...   111   2e-23
tr|B0C940|B0C940_ACAM1 Alternative oxidase, putative OS=Acaryoch...    85   2e-15
tr|Q00UF9|Q00UF9_OSTTA Quinol-to-oxygen oxidoreductase (ISS) OS=...    83   8e-15
tr|B0CBZ5|B0CBZ5_ACAM1 Alternative oxidase, putative OS=Acaryoch...    82   2e-14
tr|Q9FEC9|Q9FEC9_SOLLC Plastid quinol oxidase (Plastid terminal ...    81   3e-14
tr|Q8YV85|Q8YV85_ANASP Oxidase OS=Anabaena sp. (strain PCC 7120)...    81   4e-14
tr|Q3MEA7|Q3MEA7_ANAVT Alternative oxidase OS=Anabaena variabili...    81   4e-14
tr|A8ZKE7|A8ZKE7_ACAM1 Alternative oxidase, putative OS=Acaryoch...    80   5e-14
tr|A9T643|A9T643_PHYPA Predicted protein (Fragment) OS=Physcomit...    80   7e-14
tr|A4S874|A4S874_OSTLU Predicted protein (Fragment) OS=Ostreococ...    80   7e-14
tr|Q9FZ04|Q9FZ04_CAPAN Plastid terminal oxidase OS=Capsicum annu...    79   2e-13
tr|Q2HTI6|Q2HTI6_MEDTR Alternative oxidase OS=Medicago truncatul...    79   2e-13
tr|Q7NN13|Q7NN13_GLOVI Oxidase OS=Gloeobacter violaceus GN=gll06...    77   6e-13
tr|A9NQ56|A9NQ56_PICSI Putative uncharacterized protein OS=Picea...    76   1e-12
tr|Q94G89|Q94G89_ORYSA Oxidase (Fragment) OS=Oryza sativa GN=IM ...    76   1e-12
tr|O82522|O82522_ORYSJ Os04g0668900 protein OS=Oryza sativa subs...    76   1e-12
tr|B8AW16|B8AW16_ORYSI Putative uncharacterized protein OS=Oryza...    76   1e-12
tr|B6TTC0|B6TTC0_MAIZE Immutans protein OS=Zea mays PE=2 SV=1          75   2e-12
tr|A9SJF9|A9SJF9_PHYPA Predicted protein (Fragment) OS=Physcomit...    75   3e-12
tr|Q0H3C8|Q0H3C8_COFCA Plastid terminal oxidase OS=Coffea caneph...    72   2e-11
tr|Q7XYL6|Q7XYL6_BIGNA Quinol-to-oxygen oxidoreductase (Fragment...    70   7e-11
tr|Q8S308|Q8S308_CHLRE Quinol-to-oxygen oxidoreductase OS=Chlamy...    68   3e-10
tr|A8IU73|A8IU73_CHLRE Alternative oxidase OS=Chlamydomonas rein...    68   3e-10
tr|Q9FYV7|Q9FYV7_WHEAT Oxidase (Fragment) OS=Triticum aestivum G...    67   8e-10
tr|B8CC74|B8CC74_THAPS Predicted protein OS=Thalassiosira pseudo...    66   1e-09
tr|A4S4P8|A4S4P8_OSTLU Predicted protein (Fragment) OS=Ostreococ...    65   2e-09
tr|Q00YZ2|Q00YZ2_OSTTA Homology to unknown gene (Fragment) OS=Os...    65   3e-09
tr|A8HK52|A8HK52_HAEPL Plastid terminal oxidase OS=Haematococcus...    64   4e-09
tr|A5GZV5|A5GZV5_HAEPL Plastid terminal oxidase OS=Haematococcus...    64   4e-09
tr|B3VSB4|B3VSB4_SOLLC PTOX protein (Fragment) OS=Solanum lycope...    64   5e-09

>tr|A9TEL5|A9TEL5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_194301 PE=4 SV=1
          Length = 212

 Score =  111 bits (278), Expect = 2e-23
 Identities = 52/73 (71%), Positives = 59/73 (80%)
 Frame = -2

Query: 547 PVAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDT 368
           P A++YYESEDLYMYDEFQTS+ PETRRPKIN+LYDVF AI+GDE EHVKT+ ACQ LD 
Sbjct: 135 PAALEYYESEDLYMYDEFQTSQAPETRRPKINNLYDVFKAISGDELEHVKTMSACQTLDM 194

Query: 367 VIVSPHKTKITGN 329
            I SPH  +   N
Sbjct: 195 PIKSPHNRRQQDN 207


>tr|B0C940|B0C940_ACAM1 Alternative oxidase, putative
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_1551
           PE=4 SV=1
          Length = 219

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDT- 368
           +AV YY   DLYM+DEFQ++R+PE RRP +++LYDVF  I  DE EHVKT+VACQ L+  
Sbjct: 146 IAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEHVKTMVACQSLEAQ 205

Query: 367 VIVSPHKTKI 338
             +SPH + +
Sbjct: 206 ANLSPHSSTL 215


>tr|Q00UF9|Q00UF9_OSTTA Quinol-to-oxygen oxidoreductase (ISS)
           OS=Ostreococcus tauri GN=Ot16g00910 PE=4 SV=1
          Length = 505

 Score = 83.2 bits (204), Expect = 8e-15
 Identities = 38/65 (58%), Positives = 49/65 (75%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDTV 365
           +AV+YYE  DLY++DEFQT+R   TRRP+I +LYDVFS I  DE EHV T+ ACQ+ D  
Sbjct: 377 IAVEYYEGADLYLFDEFQTAREVRTRRPRIRTLYDVFSNIRDDEGEHVSTMNACQKEDAA 436

Query: 364 IVSPH 350
           + SP+
Sbjct: 437 VSSPN 441


>tr|B0CBZ5|B0CBZ5_ACAM1 Alternative oxidase, putative
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_0483
           PE=4 SV=1
          Length = 221

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDT- 368
           VA+ YY+  DLYM+DEFQT+     RRP++++LYDVF AI  DE EHVKTI+ACQQ +  
Sbjct: 141 VAIQYYQDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEHVKTILACQQPEAQ 200

Query: 367 -VIVSPH 350
             ++SPH
Sbjct: 201 QALLSPH 207


>tr|Q9FEC9|Q9FEC9_SOLLC Plastid quinol oxidase (Plastid terminal
           oxidase) OS=Solanum lycopersicum GN=PTOX PE=2 SV=1
          Length = 366

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDTV 365
           +AVDYY   DLY++DEFQTSR P TRRPKI++LYDVF  I  DE EH KT+ ACQ   + 
Sbjct: 264 IAVDYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGS- 322

Query: 364 IVSPH 350
           + SPH
Sbjct: 323 LRSPH 327


>tr|Q8YV85|Q8YV85_ANASP Oxidase OS=Anabaena sp. (strain PCC 7120)
           GN=all2096 PE=4 SV=1
          Length = 230

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 40/67 (59%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDT- 368
           VA  YY   DLYM+DEFQT+  P  RRP I++LYDVF AI  DE EHVKT+VACQQ +  
Sbjct: 146 VAKTYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVAIRDDEMEHVKTMVACQQTNAK 205

Query: 367 -VIVSPH 350
             + SPH
Sbjct: 206 YSLKSPH 212


>tr|Q3MEA7|Q3MEA7_ANAVT Alternative oxidase OS=Anabaena variabilis
           (strain ATCC 29413 / PCC 7937) GN=Ava_1055 PE=4 SV=1
          Length = 228

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDT- 368
           VA  YY   DLYM+DEFQT+  P  RRP I++LYDVF AI  DE EHVKT+VACQQ +  
Sbjct: 146 VAKIYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVAIRDDEMEHVKTMVACQQTNAQ 205

Query: 367 -VIVSPHKTK 341
             + SPH ++
Sbjct: 206 YSLKSPHNSE 215


>tr|A8ZKE7|A8ZKE7_ACAM1 Alternative oxidase, putative
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_A0138
           PE=4 SV=1
          Length = 226

 Score = 80.5 bits (197), Expect = 5e-14
 Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDT- 368
           VA+ YY   DLYM+DEFQT+     RRP++++LYDVF AI  DE EHVKT+VACQQ +  
Sbjct: 146 VAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEHVKTMVACQQPEAQ 205

Query: 367 -VIVSPH 350
             ++SPH
Sbjct: 206 QSLLSPH 212


>tr|A9T643|A9T643_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_33582 PE=4 SV=1
          Length = 240

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 40/65 (61%), Positives = 47/65 (72%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDTV 365
           VAV YY S DLY++DEFQT R P TRRPKI++LYDVF  I  DE EH KT++ACQ     
Sbjct: 161 VAVKYYTSGDLYLFDEFQTDRTPNTRRPKIDNLYDVFYNIREDEAEHCKTMLACQTRGN- 219

Query: 364 IVSPH 350
           + SPH
Sbjct: 220 LRSPH 224


>tr|A4S874|A4S874_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_10319 PE=4 SV=1
          Length = 240

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 38/65 (58%), Positives = 50/65 (76%)
 Frame = -2

Query: 544 VAVDYYESEDLYMYDEFQTSRLPETRRPKINSLYDVFSAIAGDEFEHVKTIVACQQLDTV 365
           +AV+YYE+ DLY++DEFQT+R    RRP+I SL+DVFS I  DE EHV T+ ACQ+ D+ 
Sbjct: 176 IAVEYYEAADLYLFDEFQTAREVRLRRPQIRSLFDVFSNIRDDEGEHVNTMNACQREDSD 235

Query: 364 IVSPH 350
           I SP+
Sbjct: 236 ISSPN 240