BP913992
Clone id YMU001_000038_F07
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCGGCAGCAGTAGGACAGTTTTCAGCCCTAGCATTTTTGCATCAGCATTACCTCCTAGCG
TTTTGCAGATTCATCGCGACAAGATTATCCCTTGCACCAGTGTTTTCAGTTTTCAGCAGT
AGATCCCACAATAGACCCCCGAACCTCGTAGATCTCACCTTCCCGTAGCAGATCCTTGCC
ACACAATCCGATCCATCGGAATTTGCAGTTTCAGCCTGGAAAACGCAGATTTCAGCATCT
GCGTTTTCAGCGCGTCGTCATCGCATCGTCGCCATCGACATCGTCACCGACATAGAGTCA
GAATTCAGCAGATAAAGATTTGCAGATTTCAGTCATTAGCATTTTCAGATTTCAGCCCGT
CTCGTCATCGTCCTTATCGTCGTCGACATCGTCGGCAAGTCCAAGCATTGTACAGATTTG
TGCAATCAATAGTAGACCGCTCTCGCC
■■Homology search results ■■ -
sp_hit_id Q92QA1
Definition sp|Q92QA1|TPIS1_RHIME Triosephosphate isomerase 1 OS=Rhizobium meliloti
Align length 63
Score (bit) 31.6
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913992|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F07.
(434 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q92QA1|TPIS1_RHIME Triosephosphate isomerase 1 OS=Rhizobium m... 32 1.5
sp|P08071|TRFL_MOUSE Lactotransferrin OS=Mus musculus GN=Ltf PE=... 30 5.6
sp|A1VKN7|RL25_POLNA 50S ribosomal protein L25 OS=Polaromonas na... 29 9.6

>sp|Q92QA1|TPIS1_RHIME Triosephosphate isomerase 1 OS=Rhizobium
meliloti GN=tpiA1 PE=3 SV=1
Length = 256

Score = 31.6 bits (70), Expect = 1.5
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2

Query: 244 RRAENADAEICVFQAETANSDGSDCVARICYGKVRSTRFGGLLWDLLLKTENTGARDNLV 65
RR ++ + + V +A+T + G+D VA +C G+ R G D+L + + D
Sbjct: 102 RRTDHGEGDALV-RAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQAT 160

Query: 64 AMN 56
A N
Sbjct: 161 AEN 163


>sp|P08071|TRFL_MOUSE Lactotransferrin OS=Mus musculus GN=Ltf PE=2
SV=3
Length = 707

Score = 29.6 bits (65), Expect = 5.6
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2

Query: 244 RRAENADAEICVFQAETAN---SDGSDCVARICYGKVRSTRFGG 122
R + E C+FQ++T N +D ++C+A+I GK S ++ G
Sbjct: 638 RNGQRCPGEFCLFQSKTKNLLFNDNTECLAKI-PGKTTSEKYLG 680


>sp|A1VKN7|RL25_POLNA 50S ribosomal protein L25 OS=Polaromonas
naphthalenivorans (strain CJ2) GN=rplY PE=3 SV=1
Length = 218

Score = 28.9 bits (63), Expect = 9.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1

Query: 169 HNPIHRNLQFQPGKRRFQHLRFQRV 243
H + R+LQ P K++ QH+ FQRV
Sbjct: 69 HKVLLRDLQMHPYKQQVQHIDFQRV 93


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913992|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F07.
(434 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******