BP914541
Clone id YMU001_000060_A11
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCAGGCTGTCCAACTCTACTAGGCCATAGAAACTTCCTAAAAAGTGGTTGAATCTGGCCT
ATGTAGGAGCTCAAAAAAATCTAACAAGAAGCGATGTACCACATTGTTGCCAAAAGCACC
TCATCGTTGTACCTGATTGGCAACCACAGACCGACGTGTCAGGGAGTGTTGAGCCAAACT
TCAGTGTAGAAGCACCCTCTGAATGTGCAGGAGGGGGGCAAGCTGCTGCTCGTGTCAAGT
CAGGGCAATCTGGCAGCCGAAGTATCGCACTGACATCTGCGGTGGAATCCATATAATGCC
CTCACCACAAGACCATCTGGAGTGGTCGACCGACCAATCCAAATTGCAATTGTCTTGTAG
CAATTGATCGGCACACCCACCAACGACCTCAAGAGTCTACTGGCCCCTAAGCATATTGGT
CTCACAGCCATCCAAATACAATGCAATGCCATCAACAAACTCCTCACGTATAGGCATATG
CAGTCCTCAAAGCTTAACCTCCTCAACAGTGACATAGCTACTCAAGGCCTCTGCAAAGAA
TAGCAGCAAGATAGGCGCAAAAGAGCATTGATGTC
■■Homology search results ■■ -
sp_hit_id Q62059
Definition sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus
Align length 93
Score (bit) 33.1
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914541|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_A11.
(575 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=V... 33 1.0
sp|Q8K1Y2|KPCD3_MOUSE Serine/threonine-protein kinase D3 OS=Mus ... 31 3.9
sp|O32333|PTHB_CLOB8 Glucitol/sorbitol-specific phosphotransfera... 31 5.1

>sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=Vcan
PE=1 SV=2
Length = 3357

Score = 33.1 bits (74), Expect = 1.0
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Frame = -3

Query: 573 HQCSFAPILLLFFAEALSSYVTVEEVKL*GLHMPIREEFVDGIALYLDG---CETNMLRG 403
+Q + + L L A ALS + ++ + I EE V+G A+YL G C+TN
Sbjct: 3003 NQATVSSTLDLHTAHALSPFSILDNSNETAFLIGISEESVEGTAVYLPGPDLCKTNPCLN 3062

Query: 402 Q*T-----LEVVGGCADQLLQDNCNLDWSVDHS 319
T V CA D C LD+ HS
Sbjct: 3063 GGTCYPTETSYVCTCAPGYSGDQCELDFDECHS 3095


>sp|Q8K1Y2|KPCD3_MOUSE Serine/threonine-protein kinase D3 OS=Mus
musculus GN=Prkd3 PE=1 SV=1
Length = 889

Score = 31.2 bits (69), Expect = 3.9
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +3

Query: 327 RPTNPNCNCLVAIDRHTHQRPQESTGP*AYWSHSHPNTMQ----CHQQTPHV*AYAVLKA 494
RP P C L++ + HTHQ P + WS P M+ C + PH +AV
Sbjct: 226 RPLQPECVPLLSEESHTHQEPSKRI---PSWS-GRPIWMEKMVMCRVKVPH--TFAV--- 276

Query: 495 *PPQQ*HSYSRP 530
HSY RP
Sbjct: 277 ------HSYGRP 282


>sp|O32333|PTHB_CLOB8 Glucitol/sorbitol-specific phosphotransferase
enzyme IIB component OS=Clostridium beijerinckii (strain
ATCC 51743 / NCIMB 8052) GN=srlE PE=4 SV=1
Length = 336

Score = 30.8 bits (68), Expect = 5.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1

Query: 410 LGASRLLRSLVGVPINCYKTIAIWIGRSTTPDGLVVRALYGFHRRCQCD 264
LG ++ +VG I + IG+ T P L + AL+ + +C CD
Sbjct: 247 LGPGAVIAQIVGT------LIGVEIGKGTIPPSLALPALFAINTQCACD 289


tr_hit_id B6NRD7
Definition tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 37
Score (bit) 36.6
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914541|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_A11.
(575 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein OS=Branc... 37 1.0
tr|A7SL95|A7SL95_NEMVE Predicted protein (Fragment) OS=Nematoste... 37 1.0
tr|Q4MZA2|Q4MZA2_THEPA Putative uncharacterized protein OS=Theil... 36 1.3
tr|B4L1W9|B4L1W9_DROMO GI15889 OS=Drosophila mojavensis GN=GI158... 34 6.5
tr|B2LS70|B2LS70_9VIBR Putative conjugative transfer protein Tra... 33 8.6
tr|A2WE48|A2WE48_9BURK Phospholipase/lecithinase/hemolysin OS=Bu... 33 8.6
tr|B7G3T1|B7G3T1_PHATR Predicted protein OS=Phaeodactylum tricor... 33 8.6

>tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_98194 PE=4 SV=1
Length = 2375

Score = 36.6 bits (83), Expect = 1.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2

Query: 256 LPDCPDLTRAAACPPPAHSEGASTLKFGSTLPDTSVC 146
+ DC DL+ CPPPA + T K G +PD VC
Sbjct: 1690 ITDCRDLSDEHECPPPACEDNEFTCKNGRCIPDGFVC 1726


>tr|A7SL95|A7SL95_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g122461 PE=4 SV=1
Length = 285

Score = 36.6 bits (83), Expect = 1.0
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = -1

Query: 551 SCCYSLQRP*VAMSLLRRLSFEDCICLYVRSLLMAL--HCIWMAVRPICLGASRLLRSLV 378
+CCY+ + + ++LR + C C YV S+ ++L C+ + + P+C R +RS+V
Sbjct: 188 ACCYARKCACLMCAVLRVVMCTVCACRYVHSVCVSLCAQCVRVVMCPMC--TCRYVRSVV 245

Query: 377 GVPINCYKTIAIWIGRS 327
VP+ C + + + RS
Sbjct: 246 CVPL-CAQCVLVDYVRS 261


>tr|Q4MZA2|Q4MZA2_THEPA Putative uncharacterized protein
OS=Theileria parva GN=TP03_0377 PE=4 SV=1
Length = 1435

Score = 36.2 bits (82), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3

Query: 87 RSDVPHCCQKHLIVVPDWQPQT-DVSGSVEPNFSVEAPSECAG 212
RS + HCC I+ PD+ + + G + NFS E +EC+G
Sbjct: 607 RSSILHCCSLLAIINPDYMSEVLSIIGELLSNFSTELEAECSG 649


>tr|B4L1W9|B4L1W9_DROMO GI15889 OS=Drosophila mojavensis GN=GI15889
PE=4 SV=1
Length = 550

Score = 33.9 bits (76), Expect = 6.5
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Frame = +3

Query: 225 AARVKSGQSGSRSIALTSAVESI*CPHHKTIWSGR--------PTNPNCNCLVAIDRHTH 380
A V S + ++ L + I C HH+ I + + PT +C+ I HTH
Sbjct: 441 AVFVASARRLEHTLDLAAIFTPIHCQHHQRILNQQALLQQQTPPTQIHCH----IHSHTH 496

Query: 381 QRPQESTGP*AY---------WSHSHPNTMQCHQQTPH 467
PQ T + +H+HP + Q HQQ H
Sbjct: 497 PHPQPPTHTHTHPHTHTHTHTHTHTHPVSHQAHQQLLH 534


>tr|B2LS70|B2LS70_9VIBR Putative conjugative transfer protein TraH
OS=Vibrio tapetis GN=traH PE=4 SV=1
Length = 443

Score = 33.5 bits (75), Expect = 8.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3

Query: 186 VEAPSECAGGGQAAARVKSGQSGSRSIALTSAVESI*CPHHKTIWSGRPTNP 341
VEA +C GGQAA ++ S + + +T +H IWS TNP
Sbjct: 198 VEAQHQCGAGGQAAGQLASAKGDASLKDMTKT-------NHNVIWSAIMTNP 242


>tr|A2WE48|A2WE48_9BURK Phospholipase/lecithinase/hemolysin
OS=Burkholderia dolosa AUO158 GN=BDAG_03034 PE=4 SV=1
Length = 466

Score = 33.5 bits (75), Expect = 8.6
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2

Query: 256 LPDCPDLTRAAACPPPAHSEGASTLKFGSTLPDTSVCGCQSGTTMRCFWQQCGTS 92
L C TR + P S G T++ G TLPD S Q+ T +RC++++ G S
Sbjct: 45 LTGCDATTRESPADWP--SAGPDTVR-GGTLPDVSASEPQTSTYLRCYYRKSGDS 96


>tr|B7G3T1|B7G3T1_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_47270 PE=4 SV=1
Length = 897

Score = 33.5 bits (75), Expect = 8.6
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = -1

Query: 512 SLLRRLSFEDCICLYVRSLL---MALHC-----IWMAVRPICLGASRLLRSLVGVPINCY 357
SL RL EDC+C+ SL + C W+AV P S L + +CY
Sbjct: 718 SLFLRLPLEDCLCMCAPSLWRTEVTPECKSDSVEWIAVPP----ESLALWDKTAIVADCY 773

Query: 356 KTIAIWIGR 330
++ IW GR
Sbjct: 774 HSLFIWFGR 782