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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915246
Clone id YMU001_000069_C05
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTTAAAGCCAAAACCATGAACAGGAGATATATACAAACCGCCATATCACATTCCATC
ATGGAGGGCCGCCTGGATCAAAGGGAAAGCTCCAAACTTCCCAACTTGAAGACTGGCTTC
CATCTGGATCCCAAACAAATTGAGCATTCTCTTCAAGCTTGTACCTTTAACATGAAGATC
TGGAACCAAAATACAAGGGGATAGACAAGGTGTGCATGCCTTAGAACGGGTCCGTGGGCC
CACATAAGCCAAACAGCACTCCAAAGCTTGGGAAACTCTTGTCACACCATCATGATCAGG
AGCGGTACCTTTCAAAAGGTACTGAAAAGCATGCATCCCCACAGAGAGGCATACGAATCC
CTTAAGGATATCAGAGGCATCCGCATAAGCCAACAGCTCCCTTGGAACATCTGTGACCAA
CTCAAGAGGAACTCCCTCATCAAGCAAACGATCTAGATCCTCATAAGTAACTTCTTCAAG
CATACTAGTATCAAAGGGAGAAGAAGGAGGTACATAATCACCCTCTTCTGATAAGAGACT
GTCAA
■■Homology search results ■■ -
sp_hit_id P16989
Definition sp|P16989|DBPA_HUMAN DNA-binding protein A OS=Homo sapiens
Align length 57
Score (bit) 34.7
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915246|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_C05.
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16989|DBPA_HUMAN DNA-binding protein A OS=Homo sapiens GN=CS...    35   0.31 
sp|O15063|K0355_HUMAN Uncharacterized protein KIAA0355 OS=Homo s...    32   1.5  
sp|Q19791|GON1_CAEEL A disintegrin and metalloproteinase with th...    32   1.5  
sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein DDB...    32   2.6  
sp|Q4A3R3|DMBT1_PIG Deleted in malignant brain tumors 1 protein ...    31   3.4  
sp|Q7TSK2|SEZ6_MOUSE Seizure protein 6 OS=Mus musculus GN=Sez6 P...    31   4.4  
sp|Q54TE3|GTAJ_DICDI GATA zinc finger domain-containing protein ...    30   5.8  
sp|A7N5C4|GCSP_VIBHB Glycine dehydrogenase [decarboxylating] OS=...    30   5.8  
sp|Q7W1C4|GCSP_BORPA Glycine dehydrogenase [decarboxylating] OS=...    30   7.6  
sp|Q7WP29|GCSP_BORBR Glycine dehydrogenase [decarboxylating] OS=...    30   7.6  
sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwa...    30   7.6  
sp|Q7W0E3|GCSP_BORPE Glycine dehydrogenase [decarboxylating] OS=...    30   9.9  
sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Pichia s...    30   9.9  

>sp|P16989|DBPA_HUMAN DNA-binding protein A OS=Homo sapiens GN=CSDA
           PE=1 SV=4
          Length = 372

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 231 SVGPHKPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAP 401
           S GP +P   P +G+      D+E   +       S +RG R P  Y+R P  P AP
Sbjct: 293 SRGPPRPRPAPAVGEA----EDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAP 345


>sp|O15063|K0355_HUMAN Uncharacterized protein KIAA0355 OS=Homo
           sapiens GN=KIAA0355 PE=1 SV=2
          Length = 1070

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 106 LKTGFHLDPKQIEHSLQAC 162
           +K GFHL+PK IE SLQ C
Sbjct: 298 MKAGFHLNPKAIEASLQGC 316


>sp|Q19791|GON1_CAEEL A disintegrin and metalloproteinase with
           thrombospondin motifs gon-1 OS=Caenorhabditis elegans
           GN=gon-1 PE=1 SV=3
          Length = 2150

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 381 DASDILKGFVCLSVGMHAFQYLLKGTAPDHDGVTRVSQAL 262
           D+ D L G + L  G+H  + ++ G   +HDG +R  Q L
Sbjct: 188 DSEDGLYGMLALPSGIHTVEPIISGNGTEHDGASRHRQHL 227


>sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein
           DDB0167791 OS=Dictyostelium discoideum GN=DDB_G0274557
           PE=4 SV=1
          Length = 233

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/64 (28%), Positives = 20/64 (31%)
 Frame = +3

Query: 219 P*NGSVGPHKPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTA 398
           P N    PH PN+ P     L HHH    +       H         P     HPH    
Sbjct: 50  PNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHH 109

Query: 399 PLEH 410
           P  H
Sbjct: 110 PHHH 113


>sp|Q4A3R3|DMBT1_PIG Deleted in malignant brain tumors 1 protein
            OS=Sus scrofa GN=DMBT1 PE=2 SV=1
          Length = 1204

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 21/94 (22%), Positives = 41/94 (43%)
 Frame = +1

Query: 148  SLQACTFNMKIWNQNTRG*TRCACLRTGPWAHISQTALQSLGNSCHTIMIRSGTFQKVLK 327
            S+    F    ++  + G TR  CL+    A +S + LQSLG S   ++I    +     
Sbjct: 848  SVTRAGFRANYYSSPSSGSTRLHCLQNHMQASVSTSYLQSLGYSARDLVIPGWEW----- 902

Query: 328  SMHPHREAYESLKDIRGIRISQQLPWNICDQLKR 429
                   +Y+    I   +++  +P++ C  ++R
Sbjct: 903  -------SYQCQPQITSTQVTFTIPYSSCGTIQR 929


>sp|Q7TSK2|SEZ6_MOUSE Seizure protein 6 OS=Mus musculus GN=Sez6 PE=1
           SV=1
          Length = 991

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +3

Query: 237 GPHKPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAPLEHL* 416
           G H   + P L KLL+HH   E +L +G E+  +PQ  +         P +P +P     
Sbjct: 54  GVHFVTTAPTL-KLLNHHPLLEEFLQEGLEREEAPQPAL---------PFQPDSPTHF-- 101

Query: 417 PTQEELPHQAN 449
            T   LP   N
Sbjct: 102 -TPSPLPRLTN 111


>sp|Q54TE3|GTAJ_DICDI GATA zinc finger domain-containing protein 10
           OS=Dictyostelium discoideum GN=gtaJ PE=4 SV=1
          Length = 714

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/86 (23%), Positives = 41/86 (47%)
 Frame = +3

Query: 252 NSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAPLEHL*PTQEE 431
           NS  +L K + H +  ++      ++    Q+  +     Q+HPH+   P +   P Q++
Sbjct: 107 NSILQLNKTMPHVNPPQQNHIMNQQQQQQQQQHYQ----QQQHPHQQQHPHQQQHPHQQQ 162

Query: 432 LPHQANDLDPHK*LLQAY*YQREKKE 509
            PHQ     PH+  +Q    Q+++++
Sbjct: 163 HPHQQQ--HPHQQQIQQQQQQQQQQQ 186


>sp|A7N5C4|GCSP_VIBHB Glycine dehydrogenase [decarboxylating]
           OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP
           PE=3 SV=1
          Length = 954

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 534 LSEEGDYVP----PSSPFDTSMLEEVTYEDLDRLLDEGVPLELVTDVPRELLAYADASDI 367
           LS + ++V     P+      MLE +    LD L+DE VP ++  + P  L      +D+
Sbjct: 8   LSTQNEFVARHNGPNKSDQQKMLEAINAVSLDSLIDETVPAQIRLEQPMNLAEAKSEADM 67

Query: 366 L 364
           L
Sbjct: 68  L 68


>sp|Q7W1C4|GCSP_BORPA Glycine dehydrogenase [decarboxylating]
           OS=Bordetella parapertussis GN=gcvP PE=3 SV=1
          Length = 954

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 519 DYVP----PSSPFDTSMLEEVTYEDLDRLLDEGVPLELVTDVPRELLAYADASDILK 361
           D++P    PS     +ML  +    LD L+DE VP  + +  P  L A    +D+L+
Sbjct: 10  DFIPRHIGPSDEDQATMLAAIGAASLDALIDEVVPPRIRSRAPLALPAARSETDVLQ 66


>sp|Q7WP29|GCSP_BORBR Glycine dehydrogenase [decarboxylating]
           OS=Bordetella bronchiseptica GN=gcvP PE=3 SV=1
          Length = 954

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 519 DYVP----PSSPFDTSMLEEVTYEDLDRLLDEGVPLELVTDVPRELLAYADASDILK 361
           D++P    PS     +ML  +    LD L+DE VP  + +  P  L A    +D+L+
Sbjct: 10  DFIPRHIGPSDEDQATMLAAIGAASLDALIDEVVPPRIRSRAPLALPAARSETDVLQ 66
tr_hit_id Q96GD7
Definition tr|Q96GD7|Q96GD7_HUMAN CSDA protein OS=Homo sapiens
Align length 112
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915246|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_C05.
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q96GD7|Q96GD7_HUMAN CSDA protein OS=Homo sapiens PE=2 SV=1          39   0.14 
tr|Q96B76|Q96B76_HUMAN CSDA protein OS=Homo sapiens GN=CSDA PE=2...    39   0.14 
tr|Q4SD05|Q4SD05_TETNG Chromosome 14 SCAF14645, whole genome sho...    37   0.52 
tr|Q9N1Q3|Q9N1Q3_CANFA Y-box protein ZONAB-A OS=Canis familiaris...    37   0.89 
tr|A8B388|A8B388_GIALA mRNA capping enzyme alpha subunit OS=Giar...    35   2.0  
tr|Q9N1Q2|Q9N1Q2_CANFA Y-box protein ZONAB-B OS=Canis familiaris...    35   3.4  
tr|B4KXI7|B4KXI7_DROMO GI11949 OS=Drosophila mojavensis GN=GI119...    35   3.4  
tr|A4VE67|A4VE67_TETTH Putative uncharacterized protein OS=Tetra...    35   3.4  
tr|B2RBW6|B2RBW6_HUMAN cDNA, FLJ95739, highly similar to Homo sa...    35   3.4  
tr|Q2USX8|Q2USX8_ASPOR Predicted protein OS=Aspergillus oryzae G...    34   4.4  
tr|A8RF95|A8RF95_9FIRM Putative uncharacterized protein OS=Eubac...    33   7.6  
tr|B8MWM8|B8MWM8_ASPFL Putative uncharacterized protein OS=Asper...    33   7.6  
tr|B4L3C9|B4L3C9_DROMO GI15070 OS=Drosophila mojavensis GN=GI150...    33   9.9  
tr|B0E2X1|B0E2X1_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.9  

>tr|Q96GD7|Q96GD7_HUMAN CSDA protein OS=Homo sapiens PE=2 SV=1
          Length = 303

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 29/112 (25%), Positives = 47/112 (41%)
 Frame = +3

Query: 66  GPPGSKGKLQTSQLEDWLPSGSQTN*AFSSSLYL*HEDLEPKYKGIDKVCMP*NGSVGPH 245
           GPP + G++   +++D +P G+Q       +         P+Y+           S GP 
Sbjct: 187 GPPRNAGEI--GEMKDGVPEGAQLQGPVHRN-----PTYRPRYR-----------SRGPP 228

Query: 246 KPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAP 401
           +P   P +G+      D+E   +       S +RG R P  Y+R P  P AP
Sbjct: 229 RPRPAPAVGEA----EDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAP 276


>tr|Q96B76|Q96B76_HUMAN CSDA protein OS=Homo sapiens GN=CSDA PE=2
           SV=1
          Length = 303

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 29/112 (25%), Positives = 47/112 (41%)
 Frame = +3

Query: 66  GPPGSKGKLQTSQLEDWLPSGSQTN*AFSSSLYL*HEDLEPKYKGIDKVCMP*NGSVGPH 245
           GPP + G++   +++D +P G+Q       +         P+Y+           S GP 
Sbjct: 187 GPPRNAGEI--GEMKDGVPEGAQLQGPVHRN-----PTYRPRYR-----------SRGPP 228

Query: 246 KPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAP 401
           +P   P +G+      D+E   +       S +RG R P  Y+R P  P AP
Sbjct: 229 RPRPAPAVGEA----EDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAP 276


>tr|Q4SD05|Q4SD05_TETNG Chromosome 14 SCAF14645, whole genome shotgun
            sequence OS=Tetraodon nigroviridis GN=GSTENG00020255001
            PE=4 SV=1
          Length = 2287

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +3

Query: 198  GIDKVCMP*NGSVGPHKPNSTPKLGKLLSHHHDQER-YLSKGTE----KHASPQRGIRIP 362
            G+D+   P      P  P+S+P   + LS H D    +LS   E    +H SP+R + + 
Sbjct: 1895 GLDRSSCP-----SPVSPSSSPSAQRYLSPHRDAHAGHLSPRRELSPLRHISPKRDLGVA 1949

Query: 363  *GYQRHPHKPTAPLEHL*PTQEELPHQANDLDPHK*LLQ 479
             GY+R       PL  L PT  +     +    H+ L++
Sbjct: 1950 GGYRRDLSPRRGPLSLLAPTGRDYKRDLSPRGRHRGLMR 1988


>tr|Q9N1Q3|Q9N1Q3_CANFA Y-box protein ZONAB-A OS=Canis familiaris
           GN=ZONAB PE=2 SV=1
          Length = 304

 Score = 36.6 bits (83), Expect = 0.89
 Identities = 27/112 (24%), Positives = 46/112 (41%)
 Frame = +3

Query: 66  GPPGSKGKLQTSQLEDWLPSGSQTN*AFSSSLYL*HEDLEPKYKGIDKVCMP*NGSVGPH 245
           GPP + G++   ++++ +P G+Q       +         P+Y+             GP 
Sbjct: 189 GPPRNAGEI--GEMKEGVPEGTQLQGPVHRN-----PTYRPRYRR------------GPP 229

Query: 246 KPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAP 401
           +P   P +G+      D+E   +       S +RG R P  Y+R P  P AP
Sbjct: 230 RPRPAPAVGEA----EDKENQQAANGPNQPSARRGYRRPYNYRRRPRPPNAP 277


>tr|A8B388|A8B388_GIALA mRNA capping enzyme alpha subunit OS=Giardia
           lamblia ATCC 50803 GN=GL50803_17308 PE=4 SV=1
          Length = 511

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 504 SSPFDTSMLEEVTYEDLDRLLDE-------GVPLELVTDVPRELLAYADASDILK 361
           S+P D   LEE  YE+LD+   E       G+ +E   +  +E+L Y D +D LK
Sbjct: 367 STPIDVISLEEKKYENLDKRNTEVQRENKPGLIIEFFWEQDKEILTYTDVTDYLK 421


>tr|Q9N1Q2|Q9N1Q2_CANFA Y-box protein ZONAB-B OS=Canis familiaris
           GN=ZONAB PE=2 SV=1
          Length = 372

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 237 GPHKPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAP 401
           GP +P   P +G+      D+E   +       S +RG R P  Y+R P  P AP
Sbjct: 295 GPPRPRPAPAVGEA----EDKENQQAANGPNQPSARRGYRRPYNYRRRPRPPNAP 345


>tr|B4KXI7|B4KXI7_DROMO GI11949 OS=Drosophila mojavensis GN=GI11949
           PE=4 SV=1
          Length = 771

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = +3

Query: 252 NSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAPLEHL*PTQEE 431
           +STP  G  L+ HH Q+++       HA P      P  YQ HPH  T P +H  P    
Sbjct: 640 SSTPTRGPPLTAHHQQQQHPQH--LHHAPPH-----PLHYQ-HPHSHTHPQQH--PHPHT 689

Query: 432 LPHQ---ANDLDPHK*LLQAY*YQREKKEVHNHP 524
            PH    A+   PH  L   + +       H HP
Sbjct: 690 HPHHFAYAHPHHPHYNLPPPHPHSHAHPHPHPHP 723


>tr|A4VE67|A4VE67_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00295979 PE=4
           SV=1
          Length = 219

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 118 FHLDPKQIEHSLQACTFNMKIWNQ 189
           +HL  KQ++HS Q C F++ +WNQ
Sbjct: 184 YHLSIKQVDHSYQFCRFSIFLWNQ 207


>tr|B2RBW6|B2RBW6_HUMAN cDNA, FLJ95739, highly similar to Homo
           sapiens cold shock domain protein A (CSDA), mRNA (Cold
           shock domain protein A, isoform CRA_a) OS=Homo sapiens
           GN=CSDA PE=2 SV=1
          Length = 372

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 231 SVGPHKPNSTPKLGKLLSHHHDQERYLSKGTEKHASPQRGIRIP*GYQRHPHKPTAP 401
           S GP +P   P +G+      D+E   +       S +RG R P  Y+R P  P AP
Sbjct: 293 SRGPPRPRPAPAVGEA----EDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAP 345


>tr|Q2USX8|Q2USX8_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090005000248 PE=4 SV=1
          Length = 466

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +1

Query: 241 HISQTALQSLGNSCHTIMIRSGTFQKVLKSMHPHREAYESLKDIRGIRISQQLPWNICDQ 420
           H   T+++S+ + C  +     +F K L+++   R+A  +LKD  G+   Q LPW+  DQ
Sbjct: 267 HQMLTSIRSVESRCLPLQALFRSFDKTLQTL---RKANNALKDCGGV---QHLPWHKMDQ 320

Query: 421 LKRN 432
           L  N
Sbjct: 321 LLDN 324