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NBDC - LSDB Archive
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BP915414
Clone id YMU001_000071_C08
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGATCAAAAAACTCACAAGTAGCATTTTCCGGCATGCCAGTATCAAAGGAAGAAGAGAAA
GACATATCATCTACTGCTTCAGGCATGAGGCTATCAAAAAAACTAAGATTATCAACTCCA
TCATCAAACATACTCTCAACATGTACCACCTCTGTGCATACACTCTCACCATCACAAAAA
CTCATAACCTCTTCAACTGAAGCATTCCCACTCTTCTCTGCATACATTCCTCATAAGAGA
CAAGACCTTGCTCTCCCTCTTGCTGTGATTTGAGCTCCAAAGCATCCTCATACACAACAT
CATATATATCTTCCGCGACAGTTAAACCAT
■■Homology search results ■■ -
sp_hit_id Q5VPE5
Definition sp|Q5VPE5|HOX28_ORYSJ Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica
Align length 47
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915414|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_C08.
         (330 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5VPE5|HOX28_ORYSJ Homeobox-leucine zipper protein HOX28 OS=O...    35   0.15 
sp|A2Y931|HOX28_ORYSI Homeobox-leucine zipper protein HOX28 OS=O...    35   0.15 
sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizos...    33   0.58 
sp|Q0JKX1|HOX3_ORYSJ Homeobox-leucine zipper protein HOX3 OS=Ory...    32   0.76 
sp|Q9XH38|HOX3_ORYSI Homeobox-leucine zipper protein HOX3 OS=Ory...    32   0.76 
sp|Q5VPE3|HOX2_ORYSJ Homeobox-leucine zipper protein HOX2 OS=Ory...    31   1.7  
sp|Q84U86|HOX2_ORYSI Homeobox-leucine zipper protein HOX2 OS=Ory...    31   1.7  
sp|Q05466|HAT4_ARATH Homeobox-leucine zipper protein HAT4 OS=Ara...    31   1.7  
sp|Q9HFS2|CREA_COCCA DNA-binding protein creA OS=Cochliobolus ca...    31   1.7  
sp|Q8GXM7|ATHBX_ARATH Homeobox-leucine zipper protein ATHB-X OS=...    31   1.7  
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1...    31   1.7  
sp|Q8CPQ1|ATL_STAES Bifunctional autolysin OS=Staphylococcus epi...    30   2.9  
sp|Q5HQB9|ATL_STAEQ Bifunctional autolysin OS=Staphylococcus epi...    30   2.9  
sp|O33635|ATL_STAEP Bifunctional autolysin OS=Staphylococcus epi...    30   2.9  
sp|Q5A4N0|ATG15_CANAL Putative lipase ATG15 OS=Candida albicans ...    30   2.9  
sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 1...    30   3.8  
sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein OS=P...    30   3.8  
sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein (Fra...    30   3.8  
sp|P09087|ABDB_DROME Homeobox protein abdominal-B OS=Drosophila ...    30   3.8  
sp|Q9CWG8|MIDA_MOUSE Protein midA homolog, mitochondrial OS=Mus ...    30   4.9  
sp|Q5XI79|MIDA_RAT Protein midA homolog, mitochondrial OS=Rattus...    29   6.4  
sp|Q7L592|MIDA_HUMAN Protein midA homolog, mitochondrial OS=Homo...    29   6.4  
sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyosteliu...    29   6.4  
sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burneti...    29   6.5  
sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burneti...    29   6.5  
sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burneti...    29   6.5  
sp|Q9QZA1|PHLA1_RAT Pleckstrin homology-like domain family A mem...    29   6.5  
sp|P21301|NDUS2_TRYBB NADH-ubiquinone oxidoreductase 49 kDa subu...    29   6.5  
sp|P46600|HAT1_ARATH Homeobox-leucine zipper protein HAT1 OS=Ara...    29   8.4  
sp|Q04433|FIT1_YEAST Facilitator of iron transport 1 OS=Saccharo...    29   8.4  

>sp|Q5VPE5|HOX28_ORYSJ Homeobox-leucine zipper protein HOX28
           OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1
          Length = 256

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 43  SKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKL 183
           S +E  D      G    KKLRLS   + +L  C  + HTL+P QK+
Sbjct: 76  SGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKV 122


>sp|A2Y931|HOX28_ORYSI Homeobox-leucine zipper protein HOX28
           OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2
          Length = 256

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 43  SKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKL 183
           S +E  D      G    KKLRLS   + +L  C  + HTL+P QK+
Sbjct: 76  SGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKV 122


>sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c
           OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1
          Length = 1236

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 28  SGMPVSKEEEKDISSTA-SGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKLITSSTEA 204
           S +  S E   ++SST  SG         STPSS+I+S+  TSV  LS S  + TSS+  
Sbjct: 495 STLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSV--LSSSSSIPTSSSSD 552

Query: 205 F 207
           F
Sbjct: 553 F 553


>sp|Q0JKX1|HOX3_ORYSJ Homeobox-leucine zipper protein HOX3 OS=Oryza
           sativa subsp. japonica GN=HOX3 PE=1 SV=1
          Length = 229

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 37  PVSKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQK 180
           P+   EE +      G    KKLRLS   S +L       HTL+P QK
Sbjct: 58  PMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQK 105


>sp|Q9XH38|HOX3_ORYSI Homeobox-leucine zipper protein HOX3 OS=Oryza
           sativa subsp. indica GN=HOX3 PE=1 SV=1
          Length = 229

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 37  PVSKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQK 180
           P+   EE +      G    KKLRLS   S +L       HTL+P QK
Sbjct: 58  PMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQK 105


>sp|Q5VPE3|HOX2_ORYSJ Homeobox-leucine zipper protein HOX2 OS=Oryza
           sativa subsp. japonica GN=HOX2 PE=1 SV=1
          Length = 308

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = +1

Query: 4   SKNSQVAFSGMPVSKEEEKDISST-------ASGMRLSKKLRLSTPSSNILSTCTTSVHT 162
           S +S  A S     +E E + S +       A G    KKLRLS   + +L  C  +  T
Sbjct: 77  SPDSAAALSSASGKRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHST 136

Query: 163 LSPSQKL 183
           L+P QK+
Sbjct: 137 LNPKQKV 143


>sp|Q84U86|HOX2_ORYSI Homeobox-leucine zipper protein HOX2 OS=Oryza
           sativa subsp. indica GN=HOX2 PE=1 SV=1
          Length = 308

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = +1

Query: 4   SKNSQVAFSGMPVSKEEEKDISST-------ASGMRLSKKLRLSTPSSNILSTCTTSVHT 162
           S +S  A S     +E E + S +       A G    KKLRLS   + +L  C  +  T
Sbjct: 77  SPDSAAALSSASGKRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHST 136

Query: 163 LSPSQKL 183
           L+P QK+
Sbjct: 137 LNPKQKV 143


>sp|Q05466|HAT4_ARATH Homeobox-leucine zipper protein HAT4
           OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1
          Length = 284

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = +1

Query: 4   SKNSQVAFS-GMPVSKEEEKD------ISSTASGMRLSKKLRLSTPSSNILSTCTTSVHT 162
           S NS V+ S G    +EE+ D      IS    G    KKLRLS   S IL        T
Sbjct: 91  SPNSTVSSSTGKRSEREEDTDPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHST 150

Query: 163 LSPSQK 180
           L+P QK
Sbjct: 151 LNPKQK 156


>sp|Q9HFS2|CREA_COCCA DNA-binding protein creA OS=Cochliobolus
           carbonum GN=CREA PE=2 SV=1
          Length = 430

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = +1

Query: 13  SQVAFSGMPVSKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKLITS 192
           SQ A+S  P+S+    +     S  R++KK R  +PSS    + T S  + SP+      
Sbjct: 258 SQYAYSSQPMSRSHSHEDDDPYSH-RMTKKSRPGSPSSTAPPSPTFSHDSCSPTPDHTPL 316

Query: 193 STEAFPLFSAYIPHKRQDLALP 258
           +T A        PH   DL LP
Sbjct: 317 ATPAHS--PRLRPHGFSDLQLP 336


>sp|Q8GXM7|ATHBX_ARATH Homeobox-leucine zipper protein ATHB-X
           OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1
          Length = 206

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 79  SGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQK 180
           SG R  KKLRL+   S++L       HTL+P QK
Sbjct: 63  SGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQK 96
tr_hit_id Q54YK3
Definition tr|Q54YK3|Q54YK3_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 80
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915414|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_C08.
         (330 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54YK3|Q54YK3_DICDI Putative uncharacterized protein OS=Dicty...    39   0.17 
tr|B6TMH5|B6TMH5_MAIZE Homeobox-leucine zipper protein ATHB-4 OS...    37   0.38 
tr|A6RDJ9|A6RDJ9_AJECN Predicted protein OS=Ajellomyces capsulat...    35   1.8  
tr|B4KK28|B4KK28_DROMO GI17200 (Fragment) OS=Drosophila mojavens...    35   2.4  
tr|B8B2B5|B8B2B5_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|B7E3F1|B7E3F1_ORYSJ cDNA clone:001-022-E09, full insert seque...    35   2.5  
tr|B6QH34|B6QH34_PENMA C2H2 finger domain protein, putative OS=P...    33   5.5  
tr|Q2A9X2|Q2A9X2_BRAOL Homeobox-leucine zipper protein, putative...    33   7.2  
tr|B6TT05|B6TT05_MAIZE Homeobox-leucine zipper protein ATHB-4 OS...    33   7.2  
tr|Q15GN2|Q15GN2_PYGRO NADH-ubiquinone oxidoreductase chain 5 OS...    33   7.2  
tr|Q8I127|Q8I127_CAEEL Protein C46C2.1b, partially confirmed by ...    33   7.2  
tr|Q18657|Q18657_CAEEL Protein C46C2.1a, partially confirmed by ...    33   7.2  
tr|Q75EH6|Q75EH6_ASHGO AAR103Cp OS=Ashbya gossypii GN=AAR103C PE...    33   7.2  
tr|Q6C3M0|Q6C3M0_YARLI YALI0E33715p OS=Yarrowia lipolytica GN=YA...    33   7.2  
tr|B2AME5|B2AME5_PODAN Predicted CDS Pa_5_7130 (Fragment) OS=Pod...    33   7.2  
tr|B4N261|B4N261_DROWI GK16436 OS=Drosophila willistoni GN=GK164...    33   9.1  
tr|Q16MU8|Q16MU8_AEDAE Lethal(3)malignant brain tumor OS=Aedes a...    33   9.4  

>tr|Q54YK3|Q54YK3_DICDI Putative uncharacterized protein
            OS=Dictyostelium discoideum GN=DDB_0204496 PE=4 SV=2
          Length = 1813

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = +2

Query: 2    DQKTHK*HFPACQYQRKKRKTYHLLLQA*GYQKN*DYQLHHQTYSQHVPPLCIHSHHHKN 181
            +  TH+ H    Q Q++ ++      Q    Q+     LHH  + QH+ P   H HHH+N
Sbjct: 1237 NHNTHQHHNNHQQQQQQPQQQ-----QQQQQQQQQQQHLHHGNHQQHLHP---HPHHHQN 1288

Query: 182  S*PLQLKHSHSSLHTFLIRD 241
                   HSH  LH+ LI++
Sbjct: 1289 Q---HHHHSHQHLHSHLIQN 1305


>tr|B6TMH5|B6TMH5_MAIZE Homeobox-leucine zipper protein ATHB-4
           OS=Zea mays PE=2 SV=1
          Length = 225

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = +1

Query: 43  SKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQK 180
           S EEE+D    A G   +KKLRLS   S +L       HTL+P QK
Sbjct: 62  SVEEEEDERGGAGGPHRAKKLRLSKEQSRLLEESFRLNHTLTPKQK 107


>tr|A6RDJ9|A6RDJ9_AJECN Predicted protein OS=Ajellomyces capsulata
           (strain NAm1 / WU24) GN=HCAG_07707 PE=4 SV=1
          Length = 485

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 116 LHHQTYSQHVPPLCIHSHHHKNS*PLQLKHSHSSLH 223
           LH +  S H  P   HSHH +NS   +  HSHS  H
Sbjct: 256 LHGENVSAHSTPSRSHSHHKRNSHSHRYSHSHSQPH 291


>tr|B4KK28|B4KK28_DROMO GI17200 (Fragment) OS=Drosophila mojavensis
            GN=GI17200 PE=4 SV=1
          Length = 1241

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 107  DYQLHHQTYSQHVPPLCIHSHHHKNS*PLQLKHSH 211
            ++Q HHQ +S H      H HHH++S   QL HSH
Sbjct: 1128 NHQSHHQHHSHH------HHHHHQHSHHHQLHHSH 1156


>tr|B8B2B5|B8B2B5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21569 PE=4 SV=1
          Length = 256

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 43  SKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKL 183
           S +E  D      G    KKLRLS   + +L  C  + HTL+P QK+
Sbjct: 76  SGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKV 122


>tr|B7E3F1|B7E3F1_ORYSJ cDNA clone:001-022-E09, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 256

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 43  SKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKL 183
           S +E  D      G    KKLRLS   + +L  C  + HTL+P QK+
Sbjct: 76  SGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKV 122


>tr|B6QH34|B6QH34_PENMA C2H2 finger domain protein, putative
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_092990 PE=4
           SV=1
          Length = 247

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = +1

Query: 37  PVSKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQKLITSSTEAFPL- 213
           P+   E   ISS AS         + +PSS   S  TT+  + S      TS  +A+P  
Sbjct: 79  PIHPSERLSISSLASHDSSRLSHAIPSPSSTTASITTTATPSTSYYS---TSEEKAYPRS 135

Query: 214 FSAYIPHKRQDLALPLAVI*AP-KHPHTQHHIYLP 315
            S   P     L  P   + +P  HP  QHH Y P
Sbjct: 136 HSTSAPVTPSTLVPPPPAMLSPVNHPGWQHHHYFP 170


>tr|Q2A9X2|Q2A9X2_BRAOL Homeobox-leucine zipper protein, putative
           OS=Brassica oleracea GN=24.t00025 PE=3 SV=1
          Length = 248

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 4   SKNSQVA--FSGMPVSKEEEKDISSTASGMRLSKKLRLSTPSSNILSTCTTSVHTLSPSQ 177
           S NS ++   SG   S+ E  D    A G    KKLRLS   S  L       +TL+P Q
Sbjct: 65  SPNSTISSTISGGKRSEREGTDEEEDAGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQ 124

Query: 178 KL 183
           KL
Sbjct: 125 KL 126


>tr|B6TT05|B6TT05_MAIZE Homeobox-leucine zipper protein ATHB-4
           OS=Zea mays PE=2 SV=1
          Length = 272

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 97  KKLRLSTPSSNILSTCTTSVHTLSPSQKLITSST 198
           KKLRLS   + +L  C  + HTL+P QK+  +S+
Sbjct: 94  KKLRLSKDQAAVLEECFKTHHTLTPKQKVALASS 127


>tr|Q15GN2|Q15GN2_PYGRO NADH-ubiquinone oxidoreductase chain 5
           OS=Pygathrix roxellana GN=ND5 PE=3 SV=1
          Length = 603

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +1

Query: 91  LSKKLRLSTPS-----SNILSTCTTSVHTLSPSQKLITSSTEAFPLFSA 222
           ++  L+++TPS     SN+L    T++H + PSQ LI S   AF L  +
Sbjct: 507 MTNNLKMNTPSHMFKFSNMLGYFPTTIHRMIPSQNLIMSQNLAFILLDS 555