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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915450
Clone id YMU001_000071_F10
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTAGAGGAGAAATGCTAAGGATAGGTTTCCCGGAGGCCCAATTCAGGCGGGTTACAGCAC
TGTACTCCACTAACCCATATCCAGGTGCTGATTGACAAGGGGAGAGGTCTGAGGTTTGTA
TTGACCAAATCTGTCAGACATCAATGCTCTTTTGCGCCTATCTTGCTGCTATTCTTTGCA
GAGGCCTTGAGTAGCTATGTCACTGTTGAGGAGGTTAAGCTTTGAGGACTGCATATGCCT
ATACGTGAGGAGTTTGTTGATGGCATTGCATTGTATTTGGATGGCTGTGAGACCAATATG
CTTAGGGGCCAGTAGACTCTTGAGATCGTTGGTGGGTGTGCCGATCAATTGCTACAAGAC
AATTGCAATTTGGATTGGTCGGTCGACCACTCCAGATGGTCTTGTGGTGAGGGCATTATA
TGGATTCCACCGCAGATGTCAGTGCGATACTTCGGCTGCCAGGTTGCCCTGACTTGACAC
GAGCAGCAGCTTGCCCCCCTCCTGCACATTCAGAGG
■■Homology search results ■■ -
sp_hit_id Q62059
Definition sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus
Align length 93
Score (bit) 33.1
E-value 0.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915450|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F10.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=V...    33   0.80 
sp|O32333|PTHB_CLOB8 Glucitol/sorbitol-specific phosphotransfera...    31   3.9  
sp|Q9VCR6|SAV_DROME Scaffold protein salvador OS=Drosophila mela...    30   6.7  
sp|Q9CXK9|RBM33_MOUSE RNA-binding protein 33 OS=Mus musculus GN=...    30   6.7  
sp|Q3UV55|NR1D1_MOUSE Nuclear receptor subfamily 1 group D membe...    30   6.7  
sp|Q12411|MPC70_YEAST Sporulation-specific protein 21 OS=Sacchar...    30   6.8  

>sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=Vcan
            PE=1 SV=2
          Length = 3357

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
 Frame = +1

Query: 139  HQCSFAPILLLFFAEALSSYVTVEEVKL*GLHMPIREEFVDGIALYLDG---CETNMLRG 309
            +Q + +  L L  A ALS +  ++        + I EE V+G A+YL G   C+TN    
Sbjct: 3003 NQATVSSTLDLHTAHALSPFSILDNSNETAFLIGISEESVEGTAVYLPGPDLCKTNPCLN 3062

Query: 310  Q*T-----LEIVGGCADQLLQDNCNLDWSVDHS 393
              T        V  CA     D C LD+   HS
Sbjct: 3063 GGTCYPTETSYVCTCAPGYSGDQCELDFDECHS 3095


>sp|O32333|PTHB_CLOB8 Glucitol/sorbitol-specific phosphotransferase
           enzyme IIB component OS=Clostridium beijerinckii (strain
           ATCC 51743 / NCIMB 8052) GN=srlE PE=4 SV=1
          Length = 336

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 302 LGASRLLRSLVGVPINCYKTIAIWIGRSTTPDGLVVRALYGFHRRCQCD 448
           LG   ++  +VG        I + IG+ T P  L + AL+  + +C CD
Sbjct: 247 LGPGAVIAQIVGT------LIGVEIGKGTIPPSLALPALFAINTQCACD 289


>sp|Q9VCR6|SAV_DROME Scaffold protein salvador OS=Drosophila
           melanogaster GN=sav PE=1 SV=2
          Length = 608

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -3

Query: 364 NCLVAIDRHTHQRSQESTGP*AYWSHSHPNTMQCHQQTPHV*AYAVLKA*PPQQ*HSYSR 185
           +C  +   + H R  +S  P    SHSHP+++  H   PHV ++  L   PP Q  + S 
Sbjct: 84  SCTDSQPDYYHARRAQSQMPLQQHSHSHPHSLP-HPSHPHVRSHPPL---PPHQFRASSN 139

Query: 184 PLQR 173
            L +
Sbjct: 140 QLSQ 143


>sp|Q9CXK9|RBM33_MOUSE RNA-binding protein 33 OS=Mus musculus
           GN=Rbm33 PE=2 SV=2
          Length = 1231

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 30/100 (30%), Positives = 48/100 (48%)
 Frame = -2

Query: 344 SAHPPTISRVYWPLSILVSQPSKYNAMPSTNSSRIGICSPQXXXXXXXXXXLKASAKNSS 165
           SA PP +     P+S    +P    A P  +SSR+  C+P             A+++N S
Sbjct: 694 SAPPPPLM----PMSQPQFRPHVQTAQPQPSSSRMQ-CTPHQGLRH------NAASQNIS 742

Query: 164 KIGAKEH*CLTDLVNTNLRPLPLSISTWIWVSGVQCCNPP 45
           K   ++    T   N+NLR LP++ S  + +SG +C + P
Sbjct: 743 KRPMQQM-QPTAPRNSNLRELPIAPSHVLEMSGNRCSSTP 781


>sp|Q3UV55|NR1D1_MOUSE Nuclear receptor subfamily 1 group D member 1
           OS=Mus musculus GN=Nr1d1 PE=1 SV=1
          Length = 615

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -3

Query: 463 PGSRSIALTSAVESI*CPHHKTIWS--GRPTNPNCNCLVAIDRHTHQRSQESTGP*AY-- 296
           PG+ +    S   S   PH    W   G P+ PN N L+A  RH    +    GP +Y  
Sbjct: 312 PGNFNANHASGSPSATTPHR---WESQGCPSAPNDNNLLAAQRHNEALNGLRQGPSSYPP 368

Query: 295 -WSHSHPNTMQCHQ 257
            W  S P    CHQ
Sbjct: 369 TWP-SGPTHHSCHQ 381


>sp|Q12411|MPC70_YEAST Sporulation-specific protein 21
           OS=Saccharomyces cerevisiae GN=SPO21 PE=1 SV=1
          Length = 609

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 243 YRHMQSSKLNLLNSDIATQGLCKE*QQDRRKRALMSDRFGQYKPQ--TSPLVNQHL 82
           +RH +    +  +S+I T  +  +   D +  A+MSD   QY  Q  TSP VN+ L
Sbjct: 178 FRHNKEIPQSKGSSNINTASIMSQYNVDTQATAIMSDMQKQYDSQQMTSPFVNEDL 233
tr_hit_id Q0CDW7
Definition tr|Q0CDW7|Q0CDW7_ASPTN Predicted protein OS=Aspergillus terreus (strain NIH 2624)
Align length 127
Score (bit) 39.3
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915450|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F10.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0CDW7|Q0CDW7_ASPTN Predicted protein OS=Aspergillus terreus ...    39   0.12 
tr|A7SL95|A7SL95_NEMVE Predicted protein (Fragment) OS=Nematoste...    37   0.75 
tr|B1X352|B1X352_CYAA5 Putative uncharacterized protein OS=Cyano...    37   0.77 
tr|Q64J11|Q64J11_CYPVA Reverse transcriptase (Fragment) OS=Cypri...    36   1.0  
tr|Q64J09|Q64J09_CYPVA Reverse transcriptase (Fragment) OS=Cypri...    36   1.0  
tr|A9US08|A9US08_MONBE Predicted protein OS=Monosiga brevicollis...    34   4.9  
tr|B7G3T1|B7G3T1_PHATR Predicted protein OS=Phaeodactylum tricor...    33   6.4  
tr|Q64J12|Q64J12_CYPVA Reverse transcriptase (Fragment) OS=Cypri...    33   8.5  

>tr|Q0CDW7|Q0CDW7_ASPTN Predicted protein OS=Aspergillus terreus
           (strain NIH 2624) GN=ATEG_08117 PE=4 SV=1
          Length = 368

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
 Frame = -1

Query: 405 TRPSGVVDRPIQIAIVL*QLIGTPTNDLKSLLAPKHIGLTAIQ-IQCNAINKLLTYRHMQ 229
           T P+   D     +IV  +  G P   L  +  P+   L  +  IQ N I  L++YR   
Sbjct: 153 TVPAVWSDMAKSASIVAAEEAGIPERHLTLVSEPEAAALHCLHSIQPNTIEDLISYRVKS 212

Query: 228 SSKLNLLNSDIATQGLCKE*QQDRRKRALMSDRFGQYKPQTSPLVNQHLDMG*WSTVL*P 49
           ++ L L      T G+C     D R +  +  RFG+ K +  P  ++ + M  W+  + P
Sbjct: 213 TNPLRLEEETEGTGGVCGSASLDERYKKHLKKRFGR-KFEKIPRQSKQMAMKYWTETIKP 271

Query: 48  A*IGPPG 28
              G  G
Sbjct: 272 NFTGQAG 278


>tr|A7SL95|A7SL95_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g122461 PE=4 SV=1
          Length = 285

 Score = 36.6 bits (83), Expect = 0.75
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +2

Query: 161 SCCYSLQRP*VAMSLLRRLSFEDCICLYVRSLLMAL--HCIWMAVRPICLGASRLLRSLV 334
           +CCY+ +   +  ++LR +    C C YV S+ ++L   C+ + + P+C    R +RS+V
Sbjct: 188 ACCYARKCACLMCAVLRVVMCTVCACRYVHSVCVSLCAQCVRVVMCPMC--TCRYVRSVV 245

Query: 335 GVPINCYKTIAIWIGRS 385
            VP+ C + + +   RS
Sbjct: 246 CVPL-CAQCVLVDYVRS 261


>tr|B1X352|B1X352_CYAA5 Putative uncharacterized protein
           OS=Cyanothece (strain ATCC 51142) GN=cce_5217 PE=4 SV=1
          Length = 278

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = -1

Query: 384 DRPIQIAIVL*QLIGTPTNDLKSLLAPKHIGLTAIQIQCNAINKLLTYRHMQSSKLNLLN 205
           DR + +  V  Q+        KS +A     L  + +  + INKLL    M+ S   ++ 
Sbjct: 147 DREMVLGKVARQIDEISDRTSKSNIAASTALLAGLLLDKDTINKLLREDIMKES---VIY 203

Query: 204 SDIATQGLCKE*QQDRRKRA------LMSDRFGQYKPQTSPLVNQ 88
            DI +QG  +  ++ R++ A      L++ RFGQ  P  + ++NQ
Sbjct: 204 QDIKSQGKAEGKEEGRQEEAVNLIKLLLNSRFGQIAPDLTEIINQ 248


>tr|Q64J11|Q64J11_CYPVA Reverse transcriptase (Fragment)
           OS=Cyprinodon variegatus PE=4 SV=1
          Length = 121

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = +1

Query: 115 FVLTKSVRHQCSFAPILLLFFAEALSSYVTVEEVKL*GLHMPIREEFVDGIALYLDGCET 294
           FVL +  R  C  +P+L   F E LS ++  +   + G+HM  RE+    ++L+ D    
Sbjct: 45  FVLERGTRQGCCVSPLLFALFIEPLSQWIR-QRTDIAGVHMASREQ---KVSLFTDDLLL 100

Query: 295 NMLRGQ*TLEIVGGCADQ 348
            +     TL ++ G  ++
Sbjct: 101 TITNPSQTLPVLMGAVEE 118


>tr|Q64J09|Q64J09_CYPVA Reverse transcriptase (Fragment)
           OS=Cyprinodon variegatus PE=4 SV=1
          Length = 121

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = +1

Query: 115 FVLTKSVRHQCSFAPILLLFFAEALSSYVTVEEVKL*GLHMPIREEFVDGIALYLDGCET 294
           FVL +  R  C  +P+L   F E LS ++  +   + G+HM  RE+    ++L+ D    
Sbjct: 45  FVLERGTRQGCCVSPLLFALFIEPLSQWIR-QRTDIAGVHMASREQ---KVSLFTDDLLL 100

Query: 295 NMLRGQ*TLEIVGGCADQ 348
            +     TL ++ G  ++
Sbjct: 101 TITNPSQTLPVLMGAVEE 118


>tr|A9US08|A9US08_MONBE Predicted protein OS=Monosiga brevicollis
            GN=22765 PE=4 SV=1
          Length = 1828

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -2

Query: 491  SCCSCQVRATWQPKYRTDICGGIHIMPSPQDHLEWSTDQSKLQLSCSN*SAHPPTISRVY 312
            +C SCQV  T++ K    IC  I   P  Q     +T  +  Q       +  P + +  
Sbjct: 1019 NCVSCQVGVTFKDKAGAGICMPISNCPVGQHETAAATSSTDRQCQPCPTGSFKPEVGQGQ 1078

Query: 311  WPLSILVSQPSKYNAMPSTNSS 246
              L+    +P +Y+A P T S+
Sbjct: 1079 CQLAKASCEPDEYSASPPTIST 1100


>tr|B7G3T1|B7G3T1_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_47270 PE=4 SV=1
          Length = 897

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = +2

Query: 200 SLLRRLSFEDCICLYVRSLL---MALHC-----IWMAVRPICLGASRLLRSLVGVPINCY 355
           SL  RL  EDC+C+   SL    +   C      W+AV P     S  L     +  +CY
Sbjct: 718 SLFLRLPLEDCLCMCAPSLWRTEVTPECKSDSVEWIAVPP----ESLALWDKTAIVADCY 773

Query: 356 KTIAIWIGR 382
            ++ IW GR
Sbjct: 774 HSLFIWFGR 782


>tr|Q64J12|Q64J12_CYPVA Reverse transcriptase (Fragment)
           OS=Cyprinodon variegatus PE=4 SV=1
          Length = 121

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 115 FVLTKSVRHQCSFAPILLLFFAEALSSYVTVEEVKL*GLHMPIREEFVDGIALYLDGCET 294
           FVL +  R  C  +P+L   F E LS ++  +   + G+HM   E+    ++L+ D    
Sbjct: 45  FVLERGTRQGCCVSPLLFALFIEPLSQWIR-QRTDIAGVHMASGEQ---KLSLFADDLLL 100

Query: 295 NMLRGQ*TLEIVGGCADQ 348
            +     TL ++ G  ++
Sbjct: 101 TITNPSQTLPVLMGAVEE 118