BP916160
Clone id YMU001_000084_A01
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATCGTAACATTTAAACTTGATTATATTGAATCAAATAGCTATACATGCGAGAGTTCTTGT
CCGTTTTAACATTACTTTTTTCTTCCCAAGATTTTTGAGAAACACCTATCTATACATCTC
TGCCTCGCTTTCACGAAACCGCTAAGGTGCAGCAACAAGACGCAGCAACGAGGCTCAGGC
TAGTCCTGAAAAGAGCACAGGATTGCACTAGCTGGCTGCTGCTGTCTTCAAATTCCCCTT
TACAAGATGTTGAATGATACAAACAAAACTGTAGTATTGGCCTGTGCACATTATAATGAT
CAATTGTGTAGCCAATCTTCTTTCGCTGCAACGTGCTTGATCGGCCAATCACGCTTATAA
ACATTTGCATTTTCTCTAGACAAAATTTAGCACTAGCAGCTGAGCTAATCCCTTTTCTGA
TTTTCAACAAAGAGGTGAATAAGTTGTGCAATGGATGACCCGTGCCACTTCCACCAAGAG
TGTCTATAAGATGGCTTGTTCAAGAATGTATGTACAATATAGAG
■■Homology search results ■■ -
sp_hit_id P12227
Definition sp|P12227|RPOC2_PEA DNA-directed RNA polymerase subunit beta'' (Fragment) OS=Pisum sativum
Align length 40
Score (bit) 32.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916160|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A01.
(524 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P12227|RPOC2_PEA DNA-directed RNA polymerase subunit beta'' (... 32 1.8
sp|Q3MNT0|SPT6_CANAL Transcription elongation factor SPT6 OS=Can... 30 5.3
sp|Q92XW1|CYSA1_RHIME Sulfate/thiosulfate import ATP-binding pro... 30 9.1

>sp|P12227|RPOC2_PEA DNA-directed RNA polymerase subunit beta''
(Fragment) OS=Pisum sativum GN=rpoC2 PE=3 SV=1
Length = 1163

Score = 32.0 bits (71), Expect = 1.8
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3

Query: 132 HETAKVQQQDAATR--LRLVLKRAQDCTSWLLLSSNSPLQ 245
H K+QQ + +R++L R ++C SW++LSS++ Q
Sbjct: 703 HSKGKIQQSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQ 742


>sp|Q3MNT0|SPT6_CANAL Transcription elongation factor SPT6
OS=Candida albicans GN=SPT6 PE=3 SV=1
Length = 1401

Score = 30.4 bits (67), Expect = 5.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2

Query: 313 GYTIDHYNVHRPILQFCLYHSTSCKGEFEDSSSQLVQ 203
GY + +H + F + S K EF+D SSQLV+
Sbjct: 772 GYNANTKRLHDVVYNFVSEYGISVKSEFDDGSSQLVK 808


>sp|Q92XW1|CYSA1_RHIME Sulfate/thiosulfate import ATP-binding
protein cysA 1 OS=Rhizobium meliloti GN=cysA1 PE=3 SV=1
Length = 347

Score = 29.6 bits (65), Expect = 9.1
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = -2

Query: 499 TSHLIDTLGGSGTGHPLHNLFTSLLKIRKGISSAASAKFCLEKMQMFISVIGRSSTLQRK 320
+ LI LG SG+G T+LL++ G+ S E M F T+Q +
Sbjct: 27 SGELIALLGPSGSGK------TTLLRLIAGLESPT------EGMIFFGDEDASKRTVQER 74

Query: 319 KIGYTIDHYNVHR 281
IG+ HY + R
Sbjct: 75 NIGFVFQHYALFR 87


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916160|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A01.
(524 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******