BP916656 |
Clone id |
YMU001_000090_A12 |
Library |
YMU01 |
Length |
546 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000090_A12. |
Accession |
BP916656 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2297Contig1 |
Sequence |
TTCTGAGAATACAATGGCAGCATTTACTTCTTCGCCGTATTTACTGTCAGGTGCTGCGAA GGTGACAGCTTGTGCCACAGCTGGATGAGCAAGAAGGACAGCATCAACTTCCAAAGGTGA AATCTTTTCTCCTCCACGATTAATCAACTCCTTGATTCGACCAGTCAAGCTCAAGTAACC ATCCTCATCTAAAAACCCCCTATCTCCGGTGTGAAACCACCCAAATGCAAATGCCACTTT GTTAGCATCCGCATTGTTTTTATACCCCTTGGTTACATTCAGTCCCTTGATACAAACTTC TCCTACTTGTCCAGGTGGCAACTCTCTTCCCTCATCATCCAGGATAGCAAGCTTAATGCC TGTGGGTTTACCAACACAGCCAGGTTTGCGAGGGCCATGTTGAGGTATAGGGTTAGAAGT CATTTGATGGCTGGCTTCTGTCATTGCATATGCTTCTAAAACGGGAGCCCTGAATGCTTC TTCTAACTGTTGGAGAACAGCAGGGGCAAGAGATGCACTGCAGCTACGAATGAATCTGAG GTCTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O74976 |
Definition |
sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe |
Align length |
179 |
Score (bit) |
233.0 |
E-value |
6.0e-61 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916656|Adiantum capillus-veneris mRNA, clone: YMU001_000090_A12. (546 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase ... 233 6e-61 sp|P38137|FAT2_YEAST Peroxisomal-coenzyme A synthetase OS=Saccha... 225 1e-58 sp|Q65FT5|MENE_BACLD 2-succinylbenzoate--CoA ligase OS=Bacillus ... 125 2e-28 sp|A7Z809|MENE_BACA2 2-succinylbenzoate--CoA ligase OS=Bacillus ... 124 3e-28 sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacill... 121 2e-27 sp|P23971|MENE_BACSU 2-succinylbenzoate--CoA ligase OS=Bacillus ... 117 3e-26 sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sa... 116 8e-26 sp|Q632I5|MENE_BACCZ 2-succinylbenzoate--CoA ligase OS=Bacillus ... 114 4e-25 sp|Q816I1|MENE_BACCR 2-succinylbenzoate--CoA ligase OS=Bacillus ... 113 7e-25 sp|Q6HC29|MENE_BACHK 2-succinylbenzoate--CoA ligase OS=Bacillus ... 112 2e-24 sp|Q81K97|MENE_BACAN 2-succinylbenzoate--CoA ligase OS=Bacillus ... 112 2e-24 sp|Q5KVX9|MENE_GEOKA 2-succinylbenzoate--CoA ligase OS=Geobacill... 111 2e-24 sp|A0RK73|MENE_BACAH 2-succinylbenzoate--CoA ligase OS=Bacillus ... 111 2e-24 sp|Q72YK9|MENE_BACC1 2-succinylbenzoate--CoA ligase OS=Bacillus ... 110 6e-24 sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacill... 109 8e-24 sp|Q838K1|MENE_ENTFA 2-succinylbenzoate--CoA ligase OS=Enterococ... 108 1e-23 sp|Q8ENZ7|MENE_OCEIH 2-succinylbenzoate--CoA ligase OS=Oceanobac... 108 2e-23 sp|P96575|YDAB_BACSU Putative acyl--CoA ligase ydaB OS=Bacillus ... 105 2e-22 sp|P39062|ACSA_BACSU Acetyl-coenzyme A synthetase OS=Bacillus su... 104 2e-22 sp|Q9LQ12|4CLL1_ARATH 4-coumarate--CoA ligase-like 1 OS=Arabidop... 104 2e-22 sp|A7GU88|MENE_BACCN 2-succinylbenzoate--CoA ligase OS=Bacillus ... 104 3e-22 sp|Q7XXL2|4CLL9_ORYSJ 4-coumarate--CoA ligase-like 9 OS=Oryza sa... 103 5e-22 sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidop... 102 9e-22 sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase OS=Luciola crucia... 102 1e-21 sp|P69451|LCFA_ECOLI Long-chain-fatty-acid--CoA ligase OS=Escher... 102 1e-21 sp|P69452|LCFA_ECOL6 Long-chain-fatty-acid--CoA ligase OS=Escher... 102 1e-21 sp|P31686|4CL1_SOYBN 4-coumarate--CoA ligase 1 (Fragment) OS=Gly... 101 2e-21 sp|Q26304|LUCI_LUCMI Luciferin 4-monooxygenase OS=Luciola mingre... 100 8e-21 sp|Q6ZAC1|4CL5_ORYSJ Probable 4-coumarate--CoA ligase 5 OS=Oryza... 100 8e-21 sp|Q71YZ5|MENE_LISMF 2-succinylbenzoate--CoA ligase OS=Listeria ... 98 2e-20
>sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe GN=SPCC1827.03c PE=1 SV=1 Length = 512
Score = 233 bits (593), Expect = 6e-61 Identities = 114/179 (63%), Positives = 141/179 (78%), Gaps = 1/179 (0%) Frame = -1
Query: 546 PDLRFIRSCSASLAPAVLQQLEEAFRAPVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGK 367 P +RFIRSCS+ LAP VL +LE FRAPVLEAYAMTEASHQMT+NP+P KP VGK Sbjct: 274 PRIRFIRSCSSPLAPPVLSKLEATFRAPVLEAYAMTEASHQMTTNPLPPL-VHKPHSVGK 332
Query: 366 PTGIKLAILDDEGRELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFG-WFHTGDRGFL 190 P G++L ILD +G E+P G+ GE+C++G+NVTKGY NN ANK +F +F TGD G L Sbjct: 333 PFGVELKILDQKGNEMPQGKEGEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKL 392
Query: 189 DEDGYLSLTGRIKELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAI 13 D+DGY+ +TGRIKEL+NRGGEKISP E+DAVL+ HP V++AV FA PD KYG+++ AAI Sbjct: 393 DKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAI 451
>sp|P38137|FAT2_YEAST Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1 Length = 543
Score = 225 bits (573), Expect = 1e-58 Identities = 112/184 (60%), Positives = 137/184 (74%), Gaps = 2/184 (1%) Frame = -1
Query: 546 PDLRFIRSCSASLAPAVLQQLEEAFRAPVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGK 367 P +RFIRSCS++LAPA +LE+ F APVLEAYAMTEASHQMTSN +P G RKPG VG+ Sbjct: 302 PHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPP-GKRKPGTVGQ 360
Query: 366 PTGIKLAILDDEGRELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAF--GWFHTGDRGF 193 P G+ + ILDD LPPG+VGEV I+G NVT GY NN ANK F +F TGD+G+ Sbjct: 361 PQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGY 420
Query: 192 LDEDGYLSLTGRIKELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAI 13 D +G+L LTGRIKELINRGGEKISP+E+D ++L+HP + +AV F PD YG+ V AAI Sbjct: 421 FDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAI 480
Query: 12 VFSE 1 V + Sbjct: 481 VLKK 484
>sp|Q65FT5|MENE_BACLD 2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1 Length = 478
Score = 125 bits (313), Expect = 2e-28 Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Frame = -1
Query: 504 PAVLQQLEEAFRA--PVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGKPTGIKLAILDDE 331 PA L LEE R PV+++Y MTE Q+ + P++ K G GKP ++ Sbjct: 267 PAPLSLLEECKRKRLPVVQSYGMTETCSQIATLA-PEYSIEKLGSAGKPLFASSIKIEKN 325
Query: 330 GRELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFGWFHTGDRGFLDEDGYLSLTGRIK 151 G E PG+ GE+ +KG V KGY N ANK +F GWF TGD G+ D+DG+L + R Sbjct: 326 GTECQPGEHGEITVKGPTVMKGYLKNEAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRS 385
Query: 150 ELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAIV 10 +LI GGE I P EV+AVLL+HP VA+A D +G+ +A +V Sbjct: 386 DLIISGGENIYPAEVEAVLLSHPNVAEAGVKGVDDKTWGKVPHAYLV 432
>sp|A7Z809|MENE_BACA2 2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1 Length = 487
Score = 124 bits (311), Expect = 3e-28 Identities = 71/169 (42%), Positives = 99/169 (58%), Gaps = 2/169 (1%) Frame = -1
Query: 504 PAVLQQLEEAFRA--PVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGKPTGIKLAILDDE 331 PA L LEE R PV ++Y +TE Q+ + P+ K G GKP ++ + Sbjct: 267 PAPLPLLEECRRKQFPVFQSYGLTETCSQIVTLS-PEFSMDKLGSAGKPLFSCEIRIEKD 325
Query: 330 GRELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFGWFHTGDRGFLDEDGYLSLTGRIK 151 G P + GE+ +KG NV KGY + DAN+ AF GWF TGD G+LD++G+L + R Sbjct: 326 GNPCAPFEHGEITVKGPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRS 385
Query: 150 ELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAIVFS 4 +LI GGE I P EV+A LLAHPAVA+A + D K+G+ +A +V + Sbjct: 386 DLIISGGENIYPAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLVLT 434
>sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=1 Length = 513
Score = 121 bits (304), Expect = 2e-27 Identities = 73/182 (40%), Positives = 97/182 (53%), Gaps = 4/182 (2%) Frame = -1
Query: 543 DLRFIRSC---SASLAPAVLQQLEEAFRAPVLEAYAMTEASHQMTSNPIPQHGPRKPGCV 373 D IR C AS+ A+L EE F +LE Y ++EAS NP + RKPG + Sbjct: 281 DFSSIRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRG--RKPGSI 338
Query: 372 GKPT-GIKLAILDDEGRELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFGWFHTGDRG 196 G ++ ++D GRELP QVGE+ +KG NV KGY + A GW +TGD Sbjct: 339 GTSILHVENKVVDPLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLA 398
Query: 195 FLDEDGYLSLTGRIKELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAA 16 DEDGY + R K++I GG + P EV+ VL +HP V +AV PD + GE V Sbjct: 399 RRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGY 458
Query: 15 IV 10 +V Sbjct: 459 VV 460
>sp|P23971|MENE_BACSU 2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2 Length = 486
Score = 117 bits (294), Expect = 3e-26 Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Frame = -1
Query: 504 PAVLQQLEEAFRA--PVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGKPTGIKLAILDDE 331 PA L LEE PV ++Y MTE Q+ + P+ K G GKP ++ + Sbjct: 266 PAPLPLLEECREKGFPVFQSYGMTETCSQIVTLS-PEFSMEKLGSAGKPLFSCEIKIERD 324
Query: 330 GRELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFGWFHTGDRGFLDEDGYLSLTGRIK 151 G+ P + GE+ +KG NV K Y N AN+ +F GW TGD G+LD +G+L + R Sbjct: 325 GQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRS 384
Query: 150 ELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAIV 10 +LI GGE I P EV++VLL+HPAVA+A A D K+G+ +A +V Sbjct: 385 DLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKKWGKVPHAYLV 431
>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2 Length = 552
Score = 116 bits (290), Expect = 8e-26 Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 4/183 (2%) Frame = -1
Query: 540 LRFIRSCSASLAPAVLQQLEEAFR-APVLEAYAMTEASHQMTSNPIPQHGP-RKPGCVGK 367 L+FI S +A L V++ + + F + +++ Y MTE + S P+ G R+ G G Sbjct: 316 LKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGYGMTETCG-IISLEYPEKGQAREFGSTGT 374
Query: 366 -PTGIKLAILDDEG-RELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFGWFHTGDRGF 193 +G++ I+D + + LPP QVGE+C++G NV +GY NN A + GW HTGD G+ Sbjct: 375 LVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNVMQGYFNNVQATEFTIKQGWLHTGDLGY 434
Query: 192 LDEDGYLSLTGRIKELINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAI 13 D G L + R+KELI G +I+P E++ +LL+HP + AV PD+K GE A + Sbjct: 435 FDGGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAKAGEVPIAYV 494
Query: 12 VFS 4 V S Sbjct: 495 VRS 497
>sp|Q632I5|MENE_BACCZ 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ZK / E33L) GN=menE PE=3 SV=1 Length = 482
Score = 114 bits (284), Expect = 4e-25 Identities = 66/168 (39%), Positives = 91/168 (54%) Frame = -1
Query: 507 APAVLQQLEEAFRAPVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGKPTGIKLAILDDEG 328 AP L + R PV + Y MTE S Q+ + + K G GKP ++ +G Sbjct: 265 APKPLLEACVEKRIPVYQTYGMTETSSQICTLSA-DYMLMKVGSAGKPLFQCQLRIEKDG 323
Query: 327 RELPPGQVGEVCIKGLNVTKGYKNNADANKVAFAFGWFHTGDRGFLDEDGYLSLTGRIKE 148 +PP GE+ +KG NVT GY N DA + GW HTGD G+LDE+G+L + R + Sbjct: 324 VVVPPFAEGEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSD 383
Query: 147 LINRGGEKISPLEVDAVLLAHPAVAQAVTFAAPDSKYGEEVNAAIVFS 4 LI GGE I P +++ VLL+HP VA+A D K+G+ A +V S Sbjct: 384 LIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKS 431
>sp|Q816I1|MENE_BACCR 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=menE PE=3 SV=1 Length = 482
Score = 113 bits (282), Expect = 7e-25 Identities = 63/154 (40%), Positives = 87/154 (56%) Frame = -1
Query: 465 PVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGKPTGIKLAILDDEGRELPPGQVGEVCIK 286 PV + Y MTE S Q+ + + K G GKP ++ +G +PP GE+ +K Sbjct: 279 PVYQTYGMTETSSQICTLSA-DYMLTKVGSAGKPLFQCQLRIEKDGVVVPPLVEGEIVVK 337
Query: 285 GLNVTKGYKNNADANKVAFAFGWFHTGDRGFLDEDGYLSLTGRIKELINRGGEKISPLEV 106 G NVT GY N DA + GW HTGD G+LDE+G+L + R +LI GGE I P ++ Sbjct: 338 GPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQI 397
Query: 105 DAVLLAHPAVAQAVTFAAPDSKYGEEVNAAIVFS 4 + VLL+HPAVA+A D K+G+ A +V S Sbjct: 398 EEVLLSHPAVAEAGVVGMSDDKWGQVPAAFVVKS 431
>sp|Q6HC29|MENE_BACHK 2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis subsp. konkukian GN=menE PE=3 SV=1 Length = 482
Score = 112 bits (279), Expect = 2e-24 Identities = 62/154 (40%), Positives = 86/154 (55%) Frame = -1
Query: 465 PVLEAYAMTEASHQMTSNPIPQHGPRKPGCVGKPTGIKLAILDDEGRELPPGQVGEVCIK 286 PV + Y MTE S Q+ + + K G GKP ++ +G +PP GE+ +K Sbjct: 279 PVYQTYGMTETSSQICTLSA-DYMLTKVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVK 337
Query: 285 GLNVTKGYKNNADANKVAFAFGWFHTGDRGFLDEDGYLSLTGRIKELINRGGEKISPLEV 106 G NVT GY N DA + GW HTGD G+LDE+G+L + R +LI GGE I P ++ Sbjct: 338 GPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQI 397
Query: 105 DAVLLAHPAVAQAVTFAAPDSKYGEEVNAAIVFS 4 + VLL+HP VA+A D K+G+ A +V S Sbjct: 398 EEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKS 431
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RN00 |
Definition |
tr|A9RN00|A9RN00_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
182 |
Score (bit) |
293.0 |
E-value |
3.0e-78 |
Report |
|