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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916661
Clone id YMU001_000090_B05
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGGGCCGCAGGGGAAAGTGCACTGCAAAAAACAGCACCTTACGAAGCACCAATAT
TGAAACAAAGTAAATAAATGTGAGGCTCCAGGAATAGAGAAGAAAACAACAAAAATGAGT
TCCCCTGACTGCTGTCTAAATCATCGTAACTATTTATCTTGAGGCTTCACGACATGGAAG
GAGCCTCACATGCCAAACATTTACCTTCTCCTCACTTCAAAGGCATCAAAGACAAAAGAA
ACTTGTAAGCCATTCTGCTGAGCAGAGCCCGCCTTGAGGTTCTTCAACCAAAAACAATCA
AAAAACACAATGCAGAGAAGTAAGAGGAGTGCACAATGGGGGACATGACTATACGAGCTG
GTAGAGTGCCATGCAGTGCCGATGTAGACAGGTCCAACAAGTTTTTCTGTGCCACAAACT
TGAACCTCATGTATGACACCTACACTAATTTTCACCTTATTTCGAAGAAATACCTTAGGT
ACGGAAGGTATCTTGCCACGGCAAGCTTTACTAAGATCTTTGCAAAGATAATTTGATAGC
TCATCCACAGAT
■■Homology search results ■■ -
sp_hit_id P11591
Definition sp|P11591|MUP5_MOUSE Major urinary protein 5 OS=Mus musculus
Align length 70
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916661|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_B05.
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11591|MUP5_MOUSE Major urinary protein 5 OS=Mus musculus GN=...    32   2.0  
sp|Q561R8|FA26F_RAT Protein FAM26F OS=Rattus norvegicus GN=Fam26...    30   6.0  

>sp|P11591|MUP5_MOUSE Major urinary protein 5 OS=Mus musculus
           GN=Mup5 PE=2 SV=1
          Length = 180

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +3

Query: 273 LEVLQPKTIKKHNAEK*EECT----MGDMTIRAGRVPCSADVDRSNKFFCATNLNLMYDT 440
           ++VL+     K +    EECT    + D T +AG    S   D  N F   T L   YD 
Sbjct: 63  IDVLENSLAFKFHTVIDEECTEIYLVADKTEKAGEY--SVTYDGFNTF---TILKTDYDN 117

Query: 441 YTNFHLISKK 470
           Y  FHLI+KK
Sbjct: 118 YIMFHLINKK 127


>sp|Q561R8|FA26F_RAT Protein FAM26F OS=Rattus norvegicus GN=Fam26f
           PE=2 SV=1
          Length = 315

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 539 LSNYLCKDLSKACRGKIPSVP 477
           L++YLCKD + +C  K+P VP
Sbjct: 135 LASYLCKDRNHSCIAKLPQVP 155
tr_hit_id B7FHV2
Definition tr|B7FHV2|B7FHV2_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 25
Score (bit) 42.7
E-value 0.013
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916661|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_B05.
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FHV2|B7FHV2_MEDTR Putative uncharacterized protein OS=Medic...    43   0.013
tr|A7PEB2|A7PEB2_VITVI Chromosome chr11 scaffold_13, whole genom...    39   0.18 
tr|B6TES2|B6TES2_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.31 
tr|B4F845|B4F845_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.31 
tr|A9RJH2|A9RJH2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.90 
tr|A2Y9F2|A2Y9F2_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.6  
tr|Q5VML4|Q5VML4_ORYSJ Os06g0150400 protein OS=Oryza sativa subs...    33   7.7  
tr|B8B314|B8B314_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.7  
tr|A3B8F6|A3B8F6_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.7  

>tr|B7FHV2|B7FHV2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 301

 Score = 42.7 bits (99), Expect = 0.013
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -2

Query: 548 VDELSNYLCKDLSKACRGKIPSVPK 474
           +D L+NYLCKDLSKAC  K P VPK
Sbjct: 146 IDSLTNYLCKDLSKACNTKPPPVPK 170


>tr|A7PEB2|A7PEB2_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016597001
           PE=4 SV=1
          Length = 299

 Score = 38.9 bits (89), Expect = 0.18
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -2

Query: 548 VDELSNYLCKDLSKACRGKIPSVPK 474
           +D L NYLCKDL+KAC    P VPK
Sbjct: 146 IDSLVNYLCKDLTKACSASPPPVPK 170


>tr|B6TES2|B6TES2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 303

 Score = 38.1 bits (87), Expect = 0.31
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -2

Query: 551 SVDELSNYLCKDLSKACRGKIPSVPK 474
           SVD+L  +LCKDLSKAC    P VPK
Sbjct: 150 SVDQLMKFLCKDLSKACAKDPPPVPK 175


>tr|B4F845|B4F845_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 303

 Score = 38.1 bits (87), Expect = 0.31
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -2

Query: 551 SVDELSNYLCKDLSKACRGKIPSVPK 474
           SVD+L  +LCKDLSKAC    P VPK
Sbjct: 150 SVDQLMKFLCKDLSKACAKDPPPVPK 175


>tr|A9RJH2|A9RJH2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115335 PE=4 SV=1
          Length = 306

 Score = 36.6 bits (83), Expect = 0.90
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = -2

Query: 539 LSNYLCKDLSKACRGKIPSVPK 474
           L+  LCKDLSKAC GK P VPK
Sbjct: 146 LTKLLCKDLSKACVGKTPRVPK 167


>tr|A2Y9F2|A2Y9F2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21693 PE=4 SV=1
          Length = 163

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = -2

Query: 551 SVDELSNYLCKDLSKACRGKIPSVPKV 471
           S D+L  +LCKDLS+AC    P VPKV
Sbjct: 132 SADQLVKFLCKDLSEACVVDPPPVPKV 158


>tr|Q5VML4|Q5VML4_ORYSJ Os06g0150400 protein OS=Oryza sativa subsp.
           japonica GN=P0529C07.1 PE=4 SV=1
          Length = 306

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 551 SVDELSNYLCKDLSKACRGKIPSVPK 474
           S D+L  +LCKDLS+AC    P VPK
Sbjct: 155 SADQLVKFLCKDLSEACVVDPPPVPK 180


>tr|B8B314|B8B314_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21695 PE=4 SV=1
          Length = 306

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 551 SVDELSNYLCKDLSKACRGKIPSVPK 474
           S D+L  +LCKDLS+AC    P VPK
Sbjct: 155 SADQLVKFLCKDLSEACVVDPPPVPK 180


>tr|A3B8F6|A3B8F6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019328 PE=4 SV=1
          Length = 365

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 551 SVDELSNYLCKDLSKACRGKIPSVPK 474
           S D+L  +LCKDLS+AC    P VPK
Sbjct: 141 SADQLVKFLCKDLSEACVVDPPPVPK 166