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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917473
Clone id YMU001_000101_C06
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000101_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTTGCAGGTGCAGGATCTCAGGCAGGGCGTACAAGGGACAGCCGTGGCAGAGCCAAGTG
TGAGTGAGCTGGAGGCAGCTCGAGAGGAGGGAAGGCAGGAAGCTGCAAAGGAGAGTGAAG
CAGAGCTGAATGATCTGCTTGTATGTCTTGGGCAGGAGGAAAGCAAGGTCGAGAGGCTGA
GGACACGCTTGGAAGAATTGGGTGAGGATGTCCAGGCATTGCTTCAGGGAATCGGTGAGG
AACCTGAAGGAGAACAGGTTGGAGAAGAGTCGTAAAGGCAAAAACATGTCAGAATTTGCA
CACTGTTTGTCTGTGGTTTCTTATCTGGGGTTTACAAGTCCTCCTCACTGGTTGAACTCT
CAGCCCTATCATCGCGTGGGACTTGGTGGATCTATACCCTTGTATGGAATGTATAGAGCC
TCTACAACTCCAGTGACCAAGTTCTTACCAGTCCTGATGGCATTTATTAGCTATTAGTAT
GACCCTCCAGCTGTATATCAAGTTGCTTGTCATTTTGATGTTTTAGAGAGCTAACATATT
TCTCATTTGATCAGTCTCTGATAACAAG
■■Homology search results ■■ -
sp_hit_id B0F9L4
Definition sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana
Align length 38
Score (bit) 43.1
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917473|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C06.
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana...    43   0.001
sp|Q90YM5|OSTA_RAJER Organic solute transporter subunit alpha OS...    32   2.9  
sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor ...    31   3.8  
sp|P05903|VIF_SIVM1 Virion infectivity factor OS=Simian immunode...    31   4.9  
sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus...    31   4.9  
sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN...    31   4.9  
sp|Q6P444|FA54A_HUMAN Protein FAM54A OS=Homo sapiens GN=FAM54A P...    31   4.9  

>sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana
           GN=GC6 PE=2 SV=2
          Length = 914

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 23/38 (60%), Positives = 24/38 (63%)
 Frame = +3

Query: 114 SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 227
           SE ELNDLLVCLGQEESKV          G DV  LL+
Sbjct: 862 SEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLE 899


>sp|Q90YM5|OSTA_RAJER Organic solute transporter subunit alpha
           OS=Raja erinacea GN=osta PE=1 SV=1
          Length = 352

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 255 VLLQVPHRFPEAMPGHPHPILPSVSSASRPCFPPA-QDIQADHSALLH 115
           +L ++ +R  +  PGH H  +  V    R C  PA  D QADHS++ H
Sbjct: 306 ILTRISYRKRDDRPGHRH--VGEVQQIVRECDQPAIADQQADHSSISH 351


>sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor type
            23 OS=Homo sapiens GN=PTPN23 PE=1 SV=1
          Length = 1636

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
 Frame = -2

Query: 261  QPVLLQVPHRFPEAMPG-----HPHPILPSVSSASRPCFP--------PAQDIQADHSAL 121
            QP+ LQ PH FP   PG      P+P  P      +P  P        PAQD    HS  
Sbjct: 974  QPLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGA 1033

Query: 120  L 118
            L
Sbjct: 1034 L 1034


>sp|P05903|VIF_SIVM1 Virion infectivity factor OS=Simian
           immunodeficiency virus (isolate Mm142-83) GN=vif PE=2
           SV=1
          Length = 214

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 166 RSRG*GHAWKNWVRMSRHCFRESVRNLKENRLEKSRKGKNMSEFAHCLSVVSYLG 330
           RS+G    WK W R +R   R + +N   +R +K R GK  +E A+   +   LG
Sbjct: 160 RSQGENPTWKQWRRDNRRSLRVAKQN---SRGDKQRGGKPPTEGANFPGLAKVLG 211


>sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus
           GN=Rin1 PE=2 SV=2
          Length = 774

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 228 PEAMPGHPHPILPSVSSASRPCFPPAQDIQADHS 127
           P A+P  P P+LP  SS+     PP Q +Q + S
Sbjct: 258 PPAVPPPPVPVLPGTSSSQTERLPPRQLLQRESS 291


>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus
           GN=Rin1 PE=1 SV=1
          Length = 763

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 228 PEAMPGHPHPILPSVSSASRPCFPPAQDIQADHS 127
           P A+P  P P+LP  SS+     PP Q +Q + S
Sbjct: 247 PPAVPPPPVPVLPGTSSSQTERLPPRQLLQRESS 280


>sp|Q6P444|FA54A_HUMAN Protein FAM54A OS=Homo sapiens GN=FAM54A PE=2
           SV=2
          Length = 385

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
 Frame = -2

Query: 228 PEAMPGH------PHPILPSVSSASRPCFPPAQ 148
           P+ +PG       P P+ P  SS   PCFPP Q
Sbjct: 198 PDQLPGSVLSPPPPPPLPPQFSSLQPPCFPPVQ 230
tr_hit_id Q2QP84
Definition tr|Q2QP84|Q2QP84_ORYSJ Os12g0538900 protein OS=Oryza sativa subsp. japonica
Align length 38
Score (bit) 48.5
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917473|Adiantum capillus-veneris mRNA, clone:
YMU001_000101_C06.
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QP84|Q2QP84_ORYSJ Os12g0538900 protein OS=Oryza sativa subs...    49   3e-04
tr|B8BMB4|B8BMB4_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A3CI41|A3CI41_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A5CAJ6|A5CAJ6_VITVI Putative uncharacterized protein OS=Vitis...    47   7e-04
tr|O65753|O65753_CICAR Putative uncharacterized protein (Fragmen...    45   0.002
tr|A9TYU0|A9TYU0_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.052
tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma f...    38   0.34 
tr|A4RXK2|A4RXK2_OSTLU Predicted protein OS=Ostreococcus lucimar...    36   1.7  
tr|B2IZ53|B2IZ53_NOSP7 RNA polymerase, sigma 28 subunit, FliA/Wh...    35   2.2  
tr|Q7S8W1|Q7S8W1_NEUCR Putative uncharacterized protein OS=Neuro...    35   2.2  
tr|Q8YQH5|Q8YQH5_ANASP RNA polymerase sigma factor OS=Anabaena s...    35   3.8  
tr|Q3MC20|Q3MC20_ANAVT RNA polymerase sigma factor OS=Anabaena v...    35   3.8  
tr|A0YKT8|A0YKT8_9CYAN Sigma factor SigF OS=Lyngbya sp. PCC 8106...    35   3.8  
tr|B6TFF1|B6TFF1_MAIZE Thioredoxin domain-containing protein 2 O...    35   3.8  
tr|B5W062|B5W062_SPIMA RNA polymerase, sigma 28 subunit, FliA/Wh...    34   5.0  
tr|Q019A0|Q019A0_OSTTA Vesicle tethering family protein (ISS) OS...    34   6.4  
tr|B4N7U7|B4N7U7_DROWI GK16091 OS=Drosophila willistoni GN=GK160...    34   6.5  
tr|B0JY76|B0JY76_MICAN RNA polymerase sigma factor OS=Microcysti...    33   8.5  

>tr|Q2QP84|Q2QP84_ORYSJ Os12g0538900 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0538900 PE=2 SV=1
          Length = 929

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/38 (65%), Positives = 26/38 (68%)
 Frame = +3

Query: 114 SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 227
           SEAELNDLLVCLGQE+SKV          GEDV  LLQ
Sbjct: 872 SEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQ 909


>tr|B8BMB4|B8BMB4_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38607 PE=4 SV=1
          Length = 1051

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/38 (65%), Positives = 26/38 (68%)
 Frame = +3

Query: 114  SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 227
            SEAELNDLLVCLGQE+SKV          GEDV  LLQ
Sbjct: 994  SEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQ 1031


>tr|A3CI41|A3CI41_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034963 PE=4 SV=1
          Length = 829

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/38 (65%), Positives = 26/38 (68%)
 Frame = +3

Query: 114 SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 227
           SEAELNDLLVCLGQE+SKV          GEDV  LLQ
Sbjct: 772 SEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQ 809


>tr|A5CAJ6|A5CAJ6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003069 PE=4 SV=1
          Length = 131

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 24/38 (63%), Positives = 26/38 (68%)
 Frame = +3

Query: 114 SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 227
           SEAELNDLLVCLGQE+SKV          GEDV  LL+
Sbjct: 77  SEAELNDLLVCLGQEQSKVEKLSARLLELGEDVDKLLE 114


>tr|O65753|O65753_CICAR Putative uncharacterized protein (Fragment)
           OS=Cicer arietinum PE=2 SV=1
          Length = 129

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +3

Query: 114 SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 227
           SE ELNDLLVCLGQE+SKV          GEDV  LL+
Sbjct: 73  SEGELNDLLVCLGQEQSKVDRLSARLLELGEDVDQLLE 110


>tr|A9TYU0|A9TYU0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_199606 PE=4 SV=1
          Length = 917

 Score = 40.8 bits (94), Expect = 0.052
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +3

Query: 117 EAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALL 224
           E ELN+LLVCLGQEE+KV          GEDV  LL
Sbjct: 860 EDELNELLVCLGQEETKVERLSARLRELGEDVDKLL 895


>tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma
           factor SigF OS=Microcystis aeruginosa PCC 7806
           GN=IPF_5732 PE=4 SV=1
          Length = 258

 Score = 38.1 bits (87), Expect = 0.34
 Identities = 20/84 (23%), Positives = 41/84 (48%)
 Frame = -2

Query: 552 DQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTKSHA 373
           +Q+R+ +   N+ +     + W      N+CH+++ +L    C G I +I+ + S+K HA
Sbjct: 26  NQLRDQIIRLNLGLVRREAHHW-----VNQCHENYEDLVQVGCMGLIRAIKRFDSSKGHA 80

Query: 372 MIGLRVQPVRRTCKPQIRNHRQTV 301
                +  +R   +  +R+   TV
Sbjct: 81  FSSFAIPYIRGEIQHYLRDKGYTV 104


>tr|A4RXK2|A4RXK2_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_38525 PE=4 SV=1
          Length = 927

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 EAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALL 224
           EAELNDLL CLGQEE+            GE   ALL
Sbjct: 879 EAELNDLLACLGQEEASKEHLLAKLIAAGESEAALL 914


>tr|B2IZ53|B2IZ53_NOSP7 RNA polymerase, sigma 28 subunit, FliA/WhiG
           family OS=Nostoc punctiforme (strain ATCC 29133 / PCC
           73102) GN=Npun_F4811 PE=4 SV=1
          Length = 269

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = -2

Query: 561 SETDQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 382
           S ++ +RN L   N  +     + W      N+CH+ + +L    C G I +I+ +  +K
Sbjct: 34  SRSENVRNKLVKLNFGLVRKEAHYW-----TNQCHETYDDLLQVGCLGLIRAIEKFELSK 88

Query: 381 SHAMIGLRVQPVRRTCKPQIRNHRQTV 301
            HA     +  +R   +  +R+   TV
Sbjct: 89  GHAFSSYALPYIRGEIQHYLRDKGVTV 115


>tr|Q7S8W1|Q7S8W1_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU08674 PE=4 SV=1
          Length = 1186

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = -2

Query: 420 GSIHSIQGYRSTKSHAMIGLRVQPVRRTCKPQIRNHRQTVCKF*HVF-AFTTLLQPVLLQ 244
           GS   ++G    + H    +R      T KPQ+ +  +   +F H F A   +  P LL 
Sbjct: 633 GSGQVVEGLTEAE-HMFHRIRTSATAET-KPQVTDEIEEAAEFIHGFMAARGVTDPRLLP 690

Query: 243 VPHRF-PEAMPGHPHPILPSVSSASRPCFPPAQDIQADHSALL 118
            P  + P++ P  PHP  P+ S+      P A       SAL+
Sbjct: 691 SPASYAPQSFPASPHPATPTASAFEDTFDPYAHSTDFKGSALI 733