BP917654 |
Clone id |
YMU001_000103_G08 |
Library |
YMU01 |
Length |
541 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000103_G08. |
Accession |
BP917654 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2505Contig1 |
Sequence |
AAAGGGAGGTGGAAGTGCACTCTCCCTCCAGGAAAGTACTCTGTGTGCTGGCATCTTAAG GTTGTCAATCCTCAACGTGGACAAGGGCACTTCCTCATGTGGTTGCGGCCTCTCAAATTC TTCATATCGCACTTGGGCACACTTTCAGAGAAGGACTTGGACTTGCTTCGCCTGCCAAAC AAAGGGTATGAGAAATGGTTCGAATTTGAAGTTGGTCAAATTGATGTCAAGGGAGAAGGG CGCAATGTTGTTGATGTCGATTTCGAGTTTGGTATTCAGGAAGTAGATTGCTCTTTTTGG AAGGGTGGTCTTTTTTTGGATTGTTTGATGGTAAGACCATCTTACTCTACTGACATGATC TATTCTACACATCTTGACCAACGATCCGGCAAAGTATGTTGGAGAACTGGAGTATTTTGA TCCACACAGGTGTGTGTGCGCTTGTATACTATCTTGTAGAGTCTATTTTATGGTGTCAAG TCTGCTATGTTCTGTAAAATAAAACAGCTCTTGGCAGACCTGACACACGCTTTATGGATC A |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FJ80 |
Definition |
sp|Q9FJ80|P2A14_ARATH F-box protein PP2-A14 OS=Arabidopsis thaliana |
Align length |
123 |
Score (bit) |
41.2 |
E-value |
0.003 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U0J0 |
Definition |
tr|A9U0J0|A9U0J0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
115 |
Score (bit) |
124.0 |
E-value |
2.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917654|Adiantum capillus-veneris mRNA, clone: YMU001_000103_G08. (541 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9U0J0|A9U0J0_PHYPA Predicted protein (Fragment) OS=Physcomit... 124 2e-27 tr|A9TZ38|A9TZ38_PHYPA Predicted protein OS=Physcomitrella paten... 60 6e-08 tr|A9NS34|A9NS34_PICSI Putative uncharacterized protein OS=Picea... 50 1e-04 tr|A9SR04|A9SR04_PHYPA Predicted protein (Fragment) OS=Physcomit... 49 2e-04 tr|A7P2S9|A7P2S9_VITVI Chromosome chr1 scaffold_5, whole genome ... 46 0.001 tr|B4FMI6|B4FMI6_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.005 tr|B8BDL7|B8BDL7_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.012 tr|Q651M6|Q651M6_ORYSJ Putative uncharacterized protein OSJNBa00... 42 0.021 tr|Q0J083|Q0J083_ORYSJ Os09g0525300 protein OS=Oryza sativa subs... 42 0.021 tr|A6MD03|A6MD03_9ORYZ F-box family protein OS=Oryza brachyantha... 42 0.021 tr|A7QZ06|A7QZ06_VITVI Chromosome undetermined scaffold_261, who... 41 0.036 tr|B6TG60|B6TG60_MAIZE ATPP2-A13 OS=Zea mays PE=2 SV=1 40 0.10 tr|B4FGF4|B4FGF4_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.10 tr|B7FHN8|B7FHN8_MEDTR Putative uncharacterized protein OS=Medic... 39 0.18 tr|A7PXZ7|A7PXZ7_VITVI Chromosome chr15 scaffold_37, whole genom... 39 0.23 tr|B6SI79|B6SI79_MAIZE ATPP2-B1 OS=Zea mays PE=2 SV=1 37 0.51 tr|B4FQD5|B4FQD5_MAIZE Putative uncharacterized protein OS=Zea m... 37 0.51 tr|A7QZ10|A7QZ10_VITVI Chromosome undetermined scaffold_261, who... 37 0.88 tr|Q8H7D6|Q8H7D6_ARATH Putative uncharacterized protein OS=Arabi... 36 1.1 tr|A9PF80|A9PF80_POPTR Putative uncharacterized protein OS=Popul... 36 1.1 tr|A3C0S1|A3C0S1_ORYSJ Putative uncharacterized protein OS=Oryza... 36 1.1 tr|A7QVJ9|A7QVJ9_VITVI Chromosome chr16 scaffold_189, whole geno... 36 1.5 tr|Q7XU46|Q7XU46_ORYSJ OSJNBa0088I22.7 protein OS=Oryza sativa s... 35 2.0 tr|Q0JAW8|Q0JAW8_ORYSJ Os04g0571300 protein OS=Oryza sativa subs... 35 2.0 tr|Q01JM6|Q01JM6_ORYSA OSIGBa0127A14.1 protein OS=Oryza sativa G... 35 2.0 tr|B8AT47|B8AT47_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.0 tr|B8IEQ4|B8IEQ4_METNO Copper resistance protein CopC OS=Methylo... 35 2.6 tr|A7PRZ2|A7PRZ2_VITVI Chromosome chr14 scaffold_27, whole genom... 35 2.6 tr|A9T192|A9T192_PHYPA Predicted protein OS=Physcomitrella paten... 35 3.3 tr|B3QLU4|B3QLU4_CHLP8 Deoxyhypusine synthase OS=Chlorobaculum p... 34 4.4
>tr|A9U0J0|A9U0J0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_7268 PE=4 SV=1 Length = 252
Score = 124 bits (312), Expect = 2e-27 Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Frame = +1
Query: 1 KGRWKCTLPPGKYSVCWHLKVVNPQRGQGHFLMWLRPLKFFISHL-GTLSEKDLDLLRLP 177 +G W C+LP G Y+ W L+ NP G+ HFL W +PL F ++ G EK L+L+ P Sbjct: 136 RGTWSCSLPAGSYTAVWRLRAANPMGGRFHFLSWKKPLTFTVATADGQTVEKSLNLVDTP 195
Query: 178 NKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDCLMVRPS 342 K +E W EFEVG I+V G+G + V + I+E DC++WKGGL+LDCL +RPS Sbjct: 196 RKCFEDWLEFEVGTINVHGDGSSTQKVKLTYSIRETDCTYWKGGLYLDCLTLRPS 250
>tr|A9TZ38|A9TZ38_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152928 PE=4 SV=1 Length = 338
Score = 60.5 bits (145), Expect = 6e-08 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Frame = +1
Query: 4 GRWKCTLPPGKYSVCWHLKVVNPQRGQGHFLMWLRPLKFFIS------------HLGTLS 147 G KC LPPG Y++ W + R + P++F +S +L S Sbjct: 153 GTMKCILPPGAYTLSWRILYRAYSRTLDGWQQL--PVEFRMSTTDGSQSSISHRYLNNRS 210
Query: 148 EKDLDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDCL 327 + ++D + + W EF+VG++ +K EG+ + EF + E+D WK G+FLD + Sbjct: 211 QSNIDDVTPVRLVDDGWLEFDVGEVTIKDEGK---ETSLEFSMVEIDSGTWKTGVFLDGV 267
Query: 328 MVRPS 342 ++RP+ Sbjct: 268 VLRPT 272
>tr|A9NS34|A9NS34_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 296
Score = 49.7 bits (117), Expect = 1e-04 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 19/129 (14%) Frame = +1
Query: 13 KCTLPPGKYSVCWHLKVVNPQRGQG-------HFLMW-LRPLKFFIS-----------HL 135 K LP G+YS+ + L++ P R G H W L+P++F +S +L Sbjct: 163 KFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDHIHGWDLKPVRFSLSTSDGQHAIRECYL 222
Query: 136 GTLSEKDLDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLF 315 E + + + +G KW ++ VG+ +VK E + V +V +F + ++DC+ KGGL Sbjct: 223 EEPGEIEGNGIVSDARG--KWTDYYVGEFEVKNESK-VTEV--KFSMTQIDCTHSKGGLC 277
Query: 316 LDCLMVRPS 342 LD + + PS Sbjct: 278 LDLVSIVPS 286
>tr|A9SR04|A9SR04_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46628 PE=4 SV=1 Length = 269
Score = 48.9 bits (115), Expect = 2e-04 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%) Frame = +1
Query: 1 KGRWKCTLPPGKYSVCWHLKVVNPQRGQGHFLMWLRPLKFFISHLG----------TLSE 150 KG +C+LPPG Y++ W L +V + P+ F +S G T Sbjct: 145 KGEIQCSLPPGDYTLSWRLFLVEAYSWES------EPVHFTLSKDGLQHIESKCYLTELP 198
Query: 151 KDLDLLRLPNKGY--EKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDC 324 ++ R+P K + W E++VG+ V + +N F + ++ +WK G+ LD Sbjct: 199 GEVPGFRVPTKRQLDDGWVEYDVGEFTVGSDEKNCA---VRFAMVAIEKLYWKYGICLDG 255
Query: 325 LMVRPS 342 ++RP+ Sbjct: 256 AVIRPT 261
>tr|A7P2S9|A7P2S9_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030169001 PE=4 SV=1 Length = 198
Score = 45.8 bits (107), Expect = 0.001 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +1
Query: 109 PLKFFISHLGTLSEKDLDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVD 288 P+KF + H G + ++ +L + ++ W E G+ V + V+ EFGI EVD Sbjct: 123 PIKFKVRHKGEETHSNIMILESYREKHDVWHEIPGGEFSVASKD----PVNVEFGIFEVD 178
Query: 289 CSFWKGGLFLDCLMVR 336 +WKGG+ L + ++ Sbjct: 179 SDWWKGGMVLGGVKIK 194
>tr|B4FMI6|B4FMI6_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 344
Score = 43.9 bits (102), Expect = 0.005 Identities = 27/73 (36%), Positives = 38/73 (52%) Frame = +1
Query: 133 LGTLSEKDLDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGL 312 L T E D D+ R P + + W E E+G+ V G+ + V E +QEVDC WK GL Sbjct: 273 LTTTREADPDI-RCPRRRGDGWAEVEMGEFHVAGDEGDAAVV--EVRVQEVDCRRWKRGL 329
Query: 313 FLDCLMVRPSYST 351 + + +RP T Sbjct: 330 VVLGVEIRPKQHT 342
>tr|B8BDL7|B8BDL7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_32098 PE=4 SV=1 Length = 287
Score = 42.7 bits (99), Expect = 0.012 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Frame = +1
Query: 1 KGRWKCTLPPGKYSVCWHLKVVNPQRGQG-------HFLMW-LRPLKFFISHLGTLSEKD 156 +G + P G YS+ + L + P + G H W ++P++F +S + Sbjct: 161 RGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQS 220
Query: 157 LDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDCLMVR 336 L P W VG VK V +F + ++DC+ KGGL +D + V+ Sbjct: 221 KCYLTDPGV----WINHHVGDFVVKSSNE---PVKIQFAMVQIDCTHTKGGLCVDSVAVK 273
Query: 337 PSY 345 P Y Sbjct: 274 PQY 276
>tr|Q651M6|Q651M6_ORYSJ Putative uncharacterized protein OSJNBa0047P18.29 (Putative uncharacterized protein OJ1439_F07.1) OS=Oryza sativa subsp. japonica GN=OSJNBa0047P18.29 PE=4 SV=1 Length = 287
Score = 42.0 bits (97), Expect = 0.021 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Frame = +1
Query: 1 KGRWKCTLPPGKYSVCWHLKVVNPQRGQG-------HFLMW-LRPLKFFISHLGTLSEKD 156 +G + P G YS+ + L + P + G H W ++P++F +S + Sbjct: 161 RGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQS 220
Query: 157 LDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDCLMVR 336 L P W VG VK V +F + ++DC+ KGGL +D + V+ Sbjct: 221 KCYLTDPGV----WINHHVGDFVVKSSNELV---KIQFAMVQIDCTHTKGGLCVDSVAVK 273
Query: 337 PSY 345 P Y Sbjct: 274 PQY 276
>tr|Q0J083|Q0J083_ORYSJ Os09g0525300 protein OS=Oryza sativa subsp. japonica GN=Os09g0525300 PE=4 SV=1 Length = 281
Score = 42.0 bits (97), Expect = 0.021 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Frame = +1
Query: 1 KGRWKCTLPPGKYSVCWHLKVVNPQRGQG-------HFLMW-LRPLKFFISHLGTLSEKD 156 +G + P G YS+ + L + P + G H W ++P++F +S + Sbjct: 155 RGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQS 214
Query: 157 LDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDCLMVR 336 L P W VG VK V +F + ++DC+ KGGL +D + V+ Sbjct: 215 KCYLTDPGV----WINHHVGDFVVKSSNELV---KIQFAMVQIDCTHTKGGLCVDSVAVK 267
Query: 337 PSY 345 P Y Sbjct: 268 PQY 270
>tr|A6MD03|A6MD03_9ORYZ F-box family protein OS=Oryza brachyantha PE=4 SV=1 Length = 292
Score = 42.0 bits (97), Expect = 0.021 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Frame = +1
Query: 1 KGRWKCTLPPGKYSVCWHLKVVNPQRGQG-------HFLMW-LRPLKFFISHLGTLSEKD 156 +G + P G YS+ + L + P + G H W ++P++F +S + Sbjct: 166 RGEVEFCFPEGTYSLFFRLHLGRPFKRLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQS 225
Query: 157 LDLLRLPNKGYEKWFEFEVGQIDVKGEGRNVVDVDFEFGIQEVDCSFWKGGLFLDCLMVR 336 L P W VG VK V +F + ++DC+ KGGL +D + V+ Sbjct: 226 KCYLTDPGV----WINHHVGDFVVKSSDE---PVKIQFAMVQIDCTHTKGGLCVDSVAVK 278
Query: 337 PSY 345 P Y Sbjct: 279 PQY 281
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