BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917746|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H09.
         (211 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea...    30   3.7  
sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever...    29   8.3  
sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea...    29   8.3  
sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea...    29   8.3  

>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea
           virus (strain CP7) PE=1 SV=1
          Length = 3907

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 174 LQSTLSNGIQSKMVDRTVSTRKPLVWPEKPSAGISSQVKSQSNL 43
           LQ   + GIQ  M  R V+     +WPEK   G+ S + + + L
Sbjct: 278 LQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTEL 321


>sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever
           virus (strain Brescia) PE=3 SV=1
          Length = 3898

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 174 LQSTLSNGIQSKMVDRTVSTRKPLVWPEKPSAGISSQVKSQSNLAQ 37
           L+   +NGIQ  M  R VS     +WPEK   G+ + + + + L +
Sbjct: 275 LRDNGTNGIQHAMYLRGVSRSLHGIWPEKICKGVPTYLATDTELRE 320


>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea
           virus (strain SD-1) PE=3 SV=1
          Length = 3898

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 174 LQSTLSNGIQSKMVDRTVSTRKPLVWPEKPSAGISSQVKSQSNL 43
           LQ   + GIQ  M  R V+     +WPEK   G+ S + +   L
Sbjct: 278 LQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDVEL 321


>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea
           virus (isolate NADL) PE=1 SV=2
          Length = 3988

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 174 LQSTLSNGIQSKMVDRTVSTRKPLVWPEKPSAGISSQVKSQSNL 43
           LQ   + GIQ  M  R V+     +WPEK   G+ S + +   L
Sbjct: 278 LQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDIEL 321

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917746|Adiantum capillus-veneris mRNA, clone:
YMU001_000104_H09.
         (211 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q182M1|Q182M1_CLOD6 ABC transporter ATP-binding protein OS=Cl...    34   4.3  
tr|A5C0C2|A5C0C2_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|Q4P4H2|Q4P4H2_USTMA Putative uncharacterized protein OS=Ustil...    33   7.3  
tr|A7HKU1|A7HKU1_FERNB ABC transporter related OS=Fervidobacteri...    33   9.5  

>tr|Q182M1|Q182M1_CLOD6 ABC transporter ATP-binding protein
           OS=Clostridium difficile (strain 630) GN=CD2534 PE=3
           SV=1
          Length = 227

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 207 KSLSKGKPHDALQSTLSNGIQSKM-VDRTVSTRKPLVWPEKPSAGISSQVKSQ 52
           KSL     HD L +TLS G Q ++ + R ++TR  ++  ++P+  + S+   +
Sbjct: 127 KSLGLENKHDVLPNTLSGGQQQRVAIARALATRPAIILADEPTGNLDSKTSDE 179


>tr|A5C0C2|A5C0C2_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_031520 PE=4 SV=1
          Length = 2703

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 200  LAKGSRMMLYNQR---FPMASKARWLIGRCP 117
            L KG R++LY+ R   FP   K+RW+I  CP
Sbjct: 2660 LRKGQRVLLYDSRLHIFPGKLKSRWMIDSCP 2690


>tr|Q4P4H2|Q4P4H2_USTMA Putative uncharacterized protein OS=Ustilago
            maydis GN=UM04991.1 PE=4 SV=1
          Length = 1362

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 207  KSLSKGKPHDALQSTLSNGIQSKMVDRTVSTRKPLVWPEKPSAGISSQVKSQSNLAQYVI 28
            ++L  G PH A ++T    +  K  D   S +K      K SA ++SQ  S S  AQ   
Sbjct: 888  RALKAGMPHSATRATFGTQVSGKADDSVSSAQK----QRKGSASLASQTTSTSRAAQSST 943

Query: 27   *SQP 16
              QP
Sbjct: 944  RPQP 947


>tr|A7HKU1|A7HKU1_FERNB ABC transporter related OS=Fervidobacterium
           nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)
           GN=Fnod_0669 PE=3 SV=1
          Length = 242

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -2

Query: 180 DALQSTLSNGIQSKM-VDRTVSTRKPLVWPEKPSAGISSQVKSQSNLAQYVI 28
           DA  S LS G Q ++ + R +STR  ++W ++P+  + S  K+   + Q +I
Sbjct: 150 DAYPSQLSGGEQQRVSIARALSTRPKIIWADEPTGALDS--KNAEQIKQLII 199