NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917834
Clone id YMU001_000106_B02
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGATATGTTACATATTTTGCCTCATGGCTTTTGCCACCGACATCAAATGATATTTACAT
GTTAACCAATACTGTACACTATACGGTACACTTGGAACCCTTCCCTACAAGAATGACCCA
AAAAAAATGTTTTGGCTTCTTCTAGCGCTTCATTACACAAGCCCCAACGACTTGCCTATG
CACAAGAGCATAAGATCCAGCTCATACTCAGCTTCTCTTACCTATTGAGTGTGCCTCCAG
AGAAGATATTTCTCATTGAAAGGCTCAAACCTTATAGCCTAGAAGATACCCAGTTGATGC
TCCGCTGCGAGCACACAAGAATCCTGCTCTATAACTGAGCTTGCACTGGAGAAGACACTT
TTGTTGGGACCACCACCATCCCCTGGGGTGCATTGCACATCTGGAACAATGCC
■■Homology search results ■■ -
sp_hit_id O60053
Definition sp|O60053|POF12_SCHPO F-box protein pof12 OS=Schizosaccharomyces pombe
Align length 65
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917834|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_B02.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60053|POF12_SCHPO F-box protein pof12 OS=Schizosaccharomyces...    32   1.3  
sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculu...    31   2.2  
sp|P32537|POLG_HE701 Genome polyprotein OS=Human enterovirus 70 ...    30   2.9  
sp|P03200|VGP3_EBV Envelope glycoprotein GP340/GP220 OS=Epstein-...    30   3.8  
sp|Q9U405|GRAU_DROME Transcription factor grauzone OS=Drosophila...    30   3.8  
sp|Q3TA59|JMJD8_MOUSE JmjC domain-containing protein 8 OS=Mus mu...    30   4.9  
sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383 OS=Emeri...    29   6.5  
sp|P68344|VGP3_EBVP3 Envelope glycoprotein GP340 OS=Epstein-Barr...    29   8.4  
sp|P68343|VGP3_EBVA8 Envelope glycoprotein GP340 OS=Epstein-Barr...    29   8.4  

>sp|O60053|POF12_SCHPO F-box protein pof12 OS=Schizosaccharomyces
           pombe GN=pof12 PE=1 SV=1
          Length = 440

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 75  YTIRYTWNPSLQE*P-KKNVLASSSASLHKPQRLAYAQEHKIQLILSFSYLLSVPPEKIF 251
           Y +   W  SLQE    +  + SS  +LH  + + Y+Q+    + +  SY+L+  P+   
Sbjct: 269 YVLSGGWTVSLQEFVFNEYCVKSSRLALHDNKDIEYSQQPASAIFMYGSYILTSHPDNSL 328

Query: 252 LIERL 266
           +++RL
Sbjct: 329 ILQRL 333


>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus
           GN=Senp7 PE=2 SV=1
          Length = 1037

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 413 GIVPDVQCTPGDGGGPNKSVFSSASSVIEQDSCV 312
           G  PD     G    PNKS+ SSASS + ++S V
Sbjct: 367 GQEPDASAASGRASSPNKSLESSASSEVSENSSV 400


>sp|P32537|POLG_HE701 Genome polyprotein OS=Human enterovirus 70
           (strain J670/71) PE=1 SV=4
          Length = 2194

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
 Frame = -3

Query: 381 GWWWSQQKCL---------LQCKLSYRAGFLCARSGASTGYLLGYKV*AFQ*EISSLEAH 229
           GWWW     L         +Q    YR+GFLC     +T +  G  +      I ++  H
Sbjct: 146 GWWWKLPDALNQIGMFGQNVQYHYLYRSGFLCHVQCNATKFHQGTLL------IVAIPEH 199

Query: 228 SIGKRS*V*AGSYALVHRQVVG 163
            IGK+    + S+A V +   G
Sbjct: 200 QIGKKGTGTSASFAEVMKGAEG 221


>sp|P03200|VGP3_EBV Envelope glycoprotein GP340/GP220
           OS=Epstein-Barr virus (strain B95-8) GN=BLLF1 PE=4 SV=1
          Length = 907

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 90  CTV*CTVLVNM*ISFDVGGKSHE 22
           C V CT  VN+ I+FDVGGK H+
Sbjct: 39  CNV-CTADVNVTINFDVGGKKHQ 60


>sp|Q9U405|GRAU_DROME Transcription factor grauzone OS=Drosophila
           melanogaster GN=grau PE=1 SV=1
          Length = 570

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 234 PPEKIFLIERLKPYSLEDTQLMLR 305
           PP++IF +ERL P+  ED +L+ R
Sbjct: 213 PPKRIFKMERLPPFCKEDEELIKR 236


>sp|Q3TA59|JMJD8_MOUSE JmjC domain-containing protein 8 OS=Mus
           musculus GN=Jmjd8 PE=2 SV=2
          Length = 316

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 109 KNDPKKMFWLLLALHYTSPNDLPM 180
           K +  K  WLLLA  Y+SP+D PM
Sbjct: 3   KEETSKAGWLLLAGSYSSPDDKPM 26


>sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383
           OS=Emericella nidulans GN=AN8721 PE=3 SV=1
          Length = 606

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
 Frame = +1

Query: 61  VNQYCTLYGTLGT-----------LPYKNDPKKMFWLLLALHYTSPNDLP-MHKSIRSSS 204
           V+Q C LY   G            +P+   PK+ F ++   H +S  +LP  H  +RS +
Sbjct: 165 VDQTCHLYSHAGAVEQIEKEKELGIPHSRAPKERFMVIYTPHVSSKEELPYYHPLVRSMA 224

Query: 205 YSASLTY 225
           +     Y
Sbjct: 225 FVYEFGY 231


>sp|P68344|VGP3_EBVP3 Envelope glycoprotein GP340 OS=Epstein-Barr
           virus (strain P3HR-1) GN=BLLF1 PE=4 SV=1
          Length = 886

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 90  CTV*CTVLVNM*ISFDVGGKSHE 22
           C V CT  VN  I+FDVGGK H+
Sbjct: 39  CNV-CTADVNATINFDVGGKKHK 60


>sp|P68343|VGP3_EBVA8 Envelope glycoprotein GP340 OS=Epstein-Barr
           virus (strain AG876) GN=BLLF1 PE=4 SV=1
          Length = 886

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 90  CTV*CTVLVNM*ISFDVGGKSHE 22
           C V CT  VN  I+FDVGGK H+
Sbjct: 39  CNV-CTADVNATINFDVGGKKHK 60
tr_hit_id A7PWA9
Definition tr|A7PWA9|A7PWA9_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera
Align length 45
Score (bit) 41.2
E-value 0.026
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917834|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_B02.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PWA9|A7PWA9_VITVI Chromosome chr8 scaffold_34, whole genome...    41   0.026
tr|A9T2L0|A9T2L0_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|Q9SVY2|Q9SVY2_ARATH Carboxyl terminal protease-like protein O...    38   0.29 
tr|B6SLF6|B6SLF6_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|Q7QKF5|Q7QKF5_ANOGA AGAP009459-PA OS=Anopheles gambiae GN=AGA...    34   4.2  

>tr|A7PWA9|A7PWA9_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025542001
           PE=4 SV=1
          Length = 243

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -1

Query: 413 GIVPDVQCTPGDGGGPNKSVFS--SASSVIEQDSCVLAAEHQLGI 285
           GI PDVQC+      P +S+    S++S +E DSC++ AEH+L +
Sbjct: 191 GITPDVQCSTEMLSSPKESLLKDKSSASSLEADSCIMVAEHELDV 235


>tr|A9T2L0|A9T2L0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_139259 PE=4 SV=1
          Length = 430

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 413 GIVPDVQCTPGDGGGPNKSVFSSASSVIEQDSCVLAAEHQLGI 285
           GI PDV+C P +    + S   ++   ++ DSC+L AEHQL +
Sbjct: 387 GIAPDVKCLPDEVLPISSSGVGTSVDPLDSDSCILTAEHQLDL 429


>tr|Q9SVY2|Q9SVY2_ARATH Carboxyl terminal protease-like protein
           OS=Arabidopsis thaliana GN=F15B8.130 PE=4 SV=1
          Length = 519

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 413 GIVPDVQCTPGDGGGPNKSVFSSASS---VIEQDSCVLAAEHQL 291
           GI PDVQCT G        +    +S   ++E DSCV+ AEH+L
Sbjct: 466 GIAPDVQCTTGMIDSLTAEIVEKMNSSVPLLEADSCVMVAEHEL 509


>tr|B6SLF6|B6SLF6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 393

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 402 RCAMHPRGWWWSQQKCLLQCK 340
           RC  H RG WW +Q+CL+ CK
Sbjct: 144 RCERHHRGDWWERQRCLMDCK 164


>tr|Q7QKF5|Q7QKF5_ANOGA AGAP009459-PA OS=Anopheles gambiae
           GN=AGAP009459 PE=4 SV=4
          Length = 298

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +3

Query: 183 QEHKIQLILSF------SYLLSVPPEKIFLIERLKPYSLEDTQLMLRCEHTRIL 326
           +E+++ LI  F       Y+ S+PPEK+   + +K Y  + T  ML C   R+L
Sbjct: 72  EENRLYLIFEFLSMDLKKYMDSLPPEKMIDADLVKSYMYQITAAMLFCHRRRVL 125