BP918515
Clone id YMU001_000114_D08
Library
Length 122
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000114_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TAGCAGGGGAGGACTTTGCGTCATCATTAGGGGCAAAATGGGCTGCCCAGCAAGAGGTTG
GTGGACTTGATGTGAAGGCGAACTCGGGTACCAATGGTGGTGCCCATGGTATATCAAAGC
AT
■■Homology search results ■■ -
sp_hit_id O08617
Definition sp|O08617|PTPRR_RAT Receptor-type tyrosine-protein phosphatase R OS=Rattus norvegicus
Align length 29
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918515|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_D08.
(122 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O08617|PTPRR_RAT Receptor-type tyrosine-protein phosphatase R... 30 2.9
sp|Q62132|PTPRR_MOUSE Receptor-type tyrosine-protein phosphatase... 30 2.9
sp|Q15256|PTPRR_HUMAN Receptor-type tyrosine-protein phosphatase... 30 2.9
sp|Q8GZD4|NAT3_ARATH Nucleobase-ascorbate transporter 3 OS=Arabi... 30 4.9
sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein OS=P... 29 8.4
sp|Q1A1A3|FOXG1_EPOGA Forkhead box protein G1 OS=Epomophorus gam... 29 8.4

>sp|O08617|PTPRR_RAT Receptor-type tyrosine-protein phosphatase R
OS=Rattus norvegicus GN=Ptprr PE=2 SV=2
Length = 656

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3

Query: 108 HGHHHWYPSSPSHQVHQPLAGQPILPLMM 22
H H+WY S P H+ P + QP+L LM+
Sbjct: 542 HVKHYWYTSWPDHKT--PDSAQPLLQLML 568


>sp|Q62132|PTPRR_MOUSE Receptor-type tyrosine-protein phosphatase R
OS=Mus musculus GN=Ptprr PE=1 SV=1
Length = 656

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3

Query: 108 HGHHHWYPSSPSHQVHQPLAGQPILPLMM 22
H H+WY S P H+ P + QP+L LM+
Sbjct: 542 HVKHYWYTSWPDHKT--PDSAQPLLQLML 568


>sp|Q15256|PTPRR_HUMAN Receptor-type tyrosine-protein phosphatase R
OS=Homo sapiens GN=PTPRR PE=1 SV=2
Length = 657

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3

Query: 108 HGHHHWYPSSPSHQVHQPLAGQPILPLMM 22
H H+WY S P H+ P + QP+L LM+
Sbjct: 543 HVKHYWYTSWPDHKT--PDSAQPLLQLML 569


>sp|Q8GZD4|NAT3_ARATH Nucleobase-ascorbate transporter 3
OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2
Length = 551

Score = 29.6 bits (65), Expect = 4.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3

Query: 117 LIYHGHHHWYPSSPSHQVHQPLAGQPILPLMMTQSPP 7
++ GHHH +P +P+ H P+ + M T PP
Sbjct: 1 MVETGHHHQHPPAPAAAGHPPVPSMAMARNMGTTWPP 37


>sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein
OS=Plasmodium falciparum (isolate NF7 / Ghana) GN=SD17
PE=4 SV=1
Length = 657

Score = 28.9 bits (63), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3

Query: 111 YHGHHHWYPSSPSHQVHQPLAGQPIL 34
+H HHH +P P V P + +P++
Sbjct: 116 HHHHHHLHPQQPQGTVANPPSNEPVV 141


>sp|Q1A1A3|FOXG1_EPOGA Forkhead box protein G1 OS=Epomophorus
gambianus GN=FOXG1 PE=3 SV=1
Length = 485

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3

Query: 111 YHGHHHWYPSSPSHQVHQPLAGQPILPLMMTQSP 10
+H HHH +P P+ Q P QP P Q P
Sbjct: 49 HHHHHHHHPPPPAPQPPPPPQQQPPPPPQAPQPP 82


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918515|Adiantum capillus-veneris mRNA, clone:
YMU001_000114_D08.
(122 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******