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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918882
Clone id YMU001_000118_F03
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000118_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGCTGTCCAACTCTACTAGGCCATAGAAACTTCCTAAAAAGTGGTTGAATCTGGCCT
ATGTAGGAGCTCAAAAAAATCTAACAAGAAGCGATGTACCACATTGTTGCCAAAAGCACC
TCATCGTTGCACCTGATTGGCAACCACAGACCGACGTGTCAGGGAGTGTTGAGCCAAACT
TCAGTGTAGAAGCACCCTCTGAATGTGCAGGAGGGGGGCAAGCTGCTGCTCGTGTCAAGT
CAGGGCAACCTGGCAGCCGAAGTATCGCACTGACATCTGCGGTGGAGTCCATATAATGCC
CTCACCACAAGACCATCTGGAGTGGTCGACCGACCAATCCAAATTGCAATTGTCTT
■■Homology search results ■■ -
sp_hit_id Q92743
Definition sp|Q92743|HTRA1_HUMAN Serine protease HTRA1 OS=Homo sapiens
Align length 55
Score (bit) 32.3
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918882|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F03.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92743|HTRA1_HUMAN Serine protease HTRA1 OS=Homo sapiens GN=H...    32   0.77 
sp|O32333|PTHB_CLOB8 Glucitol/sorbitol-specific phosphotransfera...    30   3.8  
sp|Q96MG2|JSPR1_HUMAN Junctional sarcoplasmic reticulum protein ...    30   3.8  
sp|P51450|RORG_MOUSE Nuclear receptor ROR-gamma OS=Mus musculus ...    29   6.5  
sp|Q5BK49|TACT_RAT T-cell surface protein tactile OS=Rattus norv...    29   8.5  

>sp|Q92743|HTRA1_HUMAN Serine protease HTRA1 OS=Homo sapiens
           GN=HTRA1 PE=1 SV=1
          Length = 480

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -2

Query: 250 GCPDLTRAAACPP-PAHSEGASTLKFGSTLPDTSVCGCQSGATMRCFWQQCGTSL 89
           GCPD    A CPP P H EG    +         VCG   GA        CG  L
Sbjct: 36  GCPDRCEPARCPPQPEHCEGG---RARDACGCCEVCGAPEGAACGLQEGPCGEGL 87


>sp|O32333|PTHB_CLOB8 Glucitol/sorbitol-specific phosphotransferase
           enzyme IIB component OS=Clostridium beijerinckii (strain
           ATCC 51743 / NCIMB 8052) GN=srlE PE=4 SV=1
          Length = 336

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 350 IAIWIGRSTTPDGLVVRALYGLHRRCQCD 264
           I + IG+ T P  L + AL+ ++ +C CD
Sbjct: 261 IGVEIGKGTIPPSLALPALFAINTQCACD 289


>sp|Q96MG2|JSPR1_HUMAN Junctional sarcoplasmic reticulum protein 1
           OS=Homo sapiens GN=JSRP1 PE=2 SV=1
          Length = 331

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = +3

Query: 54  LAYVGAQKNLTRSDVPHCCQKHLIVAPDWQPQTDVS---GSVEPNFSVEAPSECAGGGQA 224
           +A +G+   L R  VP        V   W P +       S  P F  +AP       +A
Sbjct: 134 VALLGSAFQLCRDAVPGEAALQARVPEPWVPPSSAPREPSSPLPKFEAQAPPSAPPAPRA 193

Query: 225 AARVKSGQPGSRSIA 269
            A V+   PGSR  A
Sbjct: 194 EAEVRPKIPGSREAA 208


>sp|P51450|RORG_MOUSE Nuclear receptor ROR-gamma OS=Mus musculus
           GN=Rorc PE=2 SV=1
          Length = 516

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 262 LRLPGCPDLTRAAACPPPAHSEGASTLKFGSTLPDTSVCG 143
           L L   PDL  A+ACPP       S   + +TL  T V G
Sbjct: 156 LPLGASPDLPEASACPPGLLRASGSGPPYSNTLAKTEVQG 195


>sp|Q5BK49|TACT_RAT T-cell surface protein tactile OS=Rattus
           norvegicus GN=Cd96 PE=2 SV=1
          Length = 603

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +3

Query: 123 IVAPDWQPQTDVSGSVEPNFSVEAPSECAGGGQAAARVKSGQPGSRSIALTSAVESI*CP 302
           ++ PD  PQT  S     + +   PS       ++    S   GSR    TS  + +  P
Sbjct: 405 VLTPDPTPQTSNSSMTTKDVNYSQPSSGTDAKNSSRAASSSDGGSRPFPSTSPPKWLSLP 464

Query: 303 HHKT 314
           H  T
Sbjct: 465 HTST 468
tr_hit_id Q4MZA2
Definition tr|Q4MZA2|Q4MZA2_THEPA Putative uncharacterized protein OS=Theileria parva
Align length 43
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918882|Adiantum capillus-veneris mRNA, clone:
YMU001_000118_F03.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4MZA2|Q4MZA2_THEPA Putative uncharacterized protein OS=Theil...    37   0.65 
tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein OS=Branc...    35   1.9  
tr|A2WE48|A2WE48_9BURK Phospholipase/lecithinase/hemolysin OS=Bu...    34   3.2  
tr|A0QZM0|A0QZM0_MYCS2 CoA-binding protein OS=Mycobacterium smeg...    33   7.2  
tr|P91019|P91019_CAEEL Let-seven (Let-7) suppressor protein 4, i...    33   7.2  
tr|Q1V3G3|Q1V3G3_VIBAL Putative uncharacterized protein OS=Vibri...    33   9.4  
tr|B2LS70|B2LS70_9VIBR Putative conjugative transfer protein Tra...    33   9.4  

>tr|Q4MZA2|Q4MZA2_THEPA Putative uncharacterized protein
           OS=Theileria parva GN=TP03_0377 PE=4 SV=1
          Length = 1435

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 87  RSDVPHCCQKHLIVAPDWQPQT-DVSGSVEPNFSVEAPSECAG 212
           RS + HCC    I+ PD+  +   + G +  NFS E  +EC+G
Sbjct: 607 RSSILHCCSLLAIINPDYMSEVLSIIGELLSNFSTELEAECSG 649


>tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_98194 PE=4 SV=1
          Length = 2375

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 289  DSTADVSAILRLPG---CPDLTRAAACPPPAHSEGASTLKFGSTLPDTSVC 146
            +S A +  + R  G   C DL+    CPPPA  +   T K G  +PD  VC
Sbjct: 1676 ESGACIKNVYRCDGITDCRDLSDEHECPPPACEDNEFTCKNGRCIPDGFVC 1726


>tr|A2WE48|A2WE48_9BURK Phospholipase/lecithinase/hemolysin
           OS=Burkholderia dolosa AUO158 GN=BDAG_03034 PE=4 SV=1
          Length = 466

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -2

Query: 256 LPGCPDLTRAAACPPPAHSEGASTLKFGSTLPDTSVCGCQSGATMRCFWQQCGTS 92
           L GC   TR +    P  S G  T++ G TLPD S    Q+   +RC++++ G S
Sbjct: 45  LTGCDATTRESPADWP--SAGPDTVR-GGTLPDVSASEPQTSTYLRCYYRKSGDS 96


>tr|A0QZM0|A0QZM0_MYCS2 CoA-binding protein OS=Mycobacterium
           smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_4075
           PE=4 SV=1
          Length = 687

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 151 PTCQGVLSQTSV*KHPLNVQEGGKLLLVSSQGNLAAEVS 267
           P C GV+  T+      N   GG++ L+S  GN+A EVS
Sbjct: 132 PNCLGVIDSTTNLTFASNPLPGGRVALLSQSGNMALEVS 170


>tr|P91019|P91019_CAEEL Let-seven (Let-7) suppressor protein 4,
           isoform a OS=Caenorhabditis elegans GN=lss-4 PE=2 SV=3
          Length = 1724

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 141 QPQTDVSGSVEPNFSVEAPSECAGGGQAAARVKSGQPGSRSIALTSAVES 290
           QP T  S S      VE P+  AGG QA +R  S  PG  +   +S + S
Sbjct: 615 QPPTPASASASTTLHVE-PASVAGGSQAGSRAPSAGPGPSATPDSSTIPS 663


>tr|Q1V3G3|Q1V3G3_VIBAL Putative uncharacterized protein OS=Vibrio
           alginolyticus 12G01 GN=V12G01_10651 PE=4 SV=1
          Length = 368

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 123 IVAPDWQPQTDVSGSVEPNFSVEAPSECAG-----GGQAAARVKSGQPGSRSIALTSAVE 287
           + A DW P  +  G +EPN  V   +E +G        +  +VKSGQP    + L S VE
Sbjct: 49  VQAVDWVPVIEAIGFIEPNQGVTVANETSGVIDKIAFDSGTQVKSGQP---LVLLDSEVE 105


>tr|B2LS70|B2LS70_9VIBR Putative conjugative transfer protein TraH
           OS=Vibrio tapetis GN=traH PE=4 SV=1
          Length = 443

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 186 VEAPSECAGGGQAAARVKSGQPGSRSIALTSAVESI*CPHHKTIWSGRPTNP 341
           VEA  +C  GGQAA ++ S +  +    +T         +H  IWS   TNP
Sbjct: 198 VEAQHQCGAGGQAAGQLASAKGDASLKDMTKT-------NHNVIWSAIMTNP 242