BP919107 |
Clone id |
YMU001_000121_C10 |
Library |
YMU01 |
Length |
476 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000121_C10. |
Accession |
BP919107 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2824Contig1 |
Sequence |
TGAAGTTTTTAGCGACGCTCTTGAATGTTCTCTCGATAGACCCATCCTTACGTTGATCGA GTACAGATATCAGTTCCCTAATTTTCTCATCTCCTGCATCCAGCTCAGCCTGCCGCTTGT GTAGCTCCTCCCTCTGCTCCGTGAAGTTCACGTACTGGTCTAGAGCCTTCTTATTGACGT GACTGTACTTCTTTAACTGCTCATTGCAGTTATGAAGCATCTTATGCAACTCTTTCAGAC TCTTTTTTTGGTACTTTTCAAAGGCATCAGATGGTAAAGGTCCCAAATCTCTAATTTTCT TCATGATATCTTCGCGCTTCACTTGAAGAAGGTTTCTCCTATTCAACAGCTGTTCTAGAT CCTTCTTTTCATCTTGAAGTGTCTTCTCATACTTTTCTTCCAGAACCTTCGTTTCATCTT TGGATGCCTTCATTTCATTTGTCTGTTTTGTCAATTTATCGATTTGATCAACAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P97690 |
Definition |
sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus |
Align length |
156 |
Score (bit) |
150.0 |
E-value |
4.0e-36 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U123 |
Definition |
tr|A9U123|A9U123_PHYPA Condensin complex component SMC3 OS=Physcomitrella patens subsp. patens |
Align length |
158 |
Score (bit) |
237.0 |
E-value |
2.0e-61 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919107|Adiantum capillus-veneris mRNA, clone: YMU001_000121_C10. (476 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9U123|A9U123_PHYPA Condensin complex component SMC3 OS=Physc... 237 2e-61 tr|A7QJS0|A7QJS0_VITVI Chromosome undetermined scaffold_107, who... 215 8e-55 tr|Q6Z6I4|Q6Z6I4_ORYSJ Putative SMC3 protein OS=Oryza sativa sub... 199 4e-50 tr|Q0E471|Q0E471_ORYSJ Os02g0133300 protein OS=Oryza sativa subs... 199 4e-50 tr|B8AH28|B8AH28_ORYSI Putative uncharacterized protein OS=Oryza... 199 4e-50 tr|Q8GU54|Q8GU54_ORYSA SMC3 protein OS=Oryza sativa GN=smc3 PE=2... 199 7e-50 tr|Q8S8B4|Q8S8B4_ARATH Putative chromosome associated protein (F... 191 2e-47 tr|Q8H2D2|Q8H2D2_ARATH SMC3 protein OS=Arabidopsis thaliana GN=s... 191 2e-47 tr|Q6QU76|Q6QU76_ARATH SMC3 OS=Arabidopsis thaliana GN=SMC3 PE=2... 191 2e-47 tr|Q56YN8|Q56YN8_ARATH Putative chromosome associated protein OS... 191 2e-47 tr|Q0WWN8|Q0WWN8_ARATH Putative chromosome associated protein OS... 191 2e-47 tr|Q6Z6I3|Q6Z6I3_ORYSJ Putative SMC3 protein OS=Oryza sativa sub... 169 6e-41 tr|Q8AW91|Q8AW91_XENLA Structural maintenance of chromosomes pro... 150 2e-35 tr|Q505N2|Q505N2_XENLA Smc3 protein OS=Xenopus laevis GN=smc3 PE... 150 2e-35 tr|Q8AWB8|Q8AWB8_CHICK Cohesin complex subunit OS=Gallus gallus ... 150 4e-35 tr|Q6PIE1|Q6PIE1_MOUSE Smc3 protein (Fragment) OS=Mus musculus G... 150 4e-35 tr|Q6PFZ4|Q6PFZ4_MOUSE Smc3 protein OS=Mus musculus GN=Smc3 PE=2... 150 4e-35 tr|Q6P5E5|Q6P5E5_MOUSE Structural maintenace of chromosomes 3 OS... 150 4e-35 tr|Q1HL32|Q1HL32_MOUSE Cspg6 OS=Mus musculus GN=Smc3 PE=2 SV=1 150 4e-35 tr|Q6IEF4|Q6IEF4_BOVIN SMC3 protein OS=Bos taurus GN=smc3 PE=2 SV=1 150 4e-35 tr|A7Z065|A7Z065_BOVIN SMC3 protein OS=Bos taurus GN=SMC3 PE=2 SV=1 150 4e-35 tr|Q86VX4|Q86VX4_HUMAN Structural maintenance of chromosomes 3 O... 150 4e-35 tr|B0AZQ4|B0AZQ4_HUMAN cDNA, FLJ79494, highly similar to Structu... 150 4e-35 tr|A8K156|A8K156_HUMAN cDNA FLJ75104, highly similar to Homo sap... 150 4e-35 tr|Q4SDI4|Q4SDI4_TETNG Chromosome 18 SCAF14637, whole genome sho... 148 1e-34 tr|Q803N2|Q803N2_DANRE Structural maintenance of chromosomes 3 O... 148 2e-34 tr|Q1LVV8|Q1LVV8_DANRE Chondroitin sulfate proteoglycan 6 (Bamac... 148 2e-34 tr|Q802S0|Q802S0_FUGRU SMC3 protein OS=Fugu rubripes GN=smc3 PE=... 147 2e-34 tr|B7Q2A3|B7Q2A3_IXOSC SMC protein, putative OS=Ixodes scapulari... 144 2e-33 tr|A7SQ80|A7SQ80_NEMVE Predicted protein (Fragment) OS=Nematoste... 140 3e-32
>tr|A9U123|A9U123_PHYPA Condensin complex component SMC3 OS=Physcomitrella patens subsp. patens GN=CPC1505 PE=4 SV=1 Length = 1192
Score = 237 bits (605), Expect = 2e-61 Identities = 121/158 (76%), Positives = 130/158 (82%) Frame = -2
Query: 475 IVDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKK 296 + DQIDK +K ++K + DE K LE+KYE TLQDE KDLE KRED+MKK Sbjct: 861 VTDQIDKHSKGIRDLKNALDELKGLEDKYELTLQDESKDLEQLLNTRNLLHAKREDLMKK 920
Query: 295 IRDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHK 116 IRDLG LPSDAFEKYQKK+LKELHKMLH CNEQLK YSHVNKKALDQYVNFTEQREELHK Sbjct: 921 IRDLGSLPSDAFEKYQKKTLKELHKMLHKCNEQLKNYSHVNKKALDQYVNFTEQREELHK 980
Query: 115 RQAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 RQAELD+GDEKIRELISVLDQRKD SIERTFK VAK F Sbjct: 981 RQAELDSGDEKIRELISVLDQRKDESIERTFKGVAKFF 1018
>tr|A7QJS0|A7QJS0_VITVI Chromosome undetermined scaffold_107, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000758001 PE=4 SV=1 Length = 1274
Score = 215 bits (548), Expect = 8e-55 Identities = 106/158 (67%), Positives = 128/158 (81%) Frame = -2
Query: 475 IVDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKK 296 + + ID+ TKQ ++K K++ K LE+ YE+TLQDE K+LE K+ED KK Sbjct: 848 VSENIDERTKQLRKIKDEKNKLKSLEDNYERTLQDEAKELEQLLSKRNLLLAKQEDYSKK 907
Query: 295 IRDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHK 116 IR+LGPL SDAF+ Y++KS+KELHKMLH CNEQL+++SHVNKKALDQY+NFTEQREEL K Sbjct: 908 IRELGPLSSDAFDTYKRKSIKELHKMLHKCNEQLQQFSHVNKKALDQYINFTEQREELQK 967
Query: 115 RQAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 RQAELDAGDEKIRELISVLDQRKD SIERTFK VA++F Sbjct: 968 RQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHF 1005
>tr|Q6Z6I4|Q6Z6I4_ORYSJ Putative SMC3 protein OS=Oryza sativa subsp. japonica GN=P0030G11.15 PE=4 SV=1 Length = 1205
Score = 199 bits (507), Expect = 4e-50 Identities = 98/157 (62%), Positives = 124/157 (78%) Frame = -2
Query: 472 VDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKKI 293 VD I+ T++ E+K +D+ K LE E+T+QD KDLE K+E+ MKKI Sbjct: 875 VDAINNFTRKMEELKRQRDDLKALEANLEQTVQDGAKDLEQLMSSRSMHLAKQEECMKKI 934
Query: 292 RDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHKR 113 RDLG LP+DAFE Y++K+ K+L KML++CNEQL+++SHVNKKALDQYVNFTEQRE+L +R Sbjct: 935 RDLGSLPADAFETYKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRR 994
Query: 112 QAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 +AELDAGD+KIRELISVLDQRKD SIERTFK VA++F Sbjct: 995 RAELDAGDQKIRELISVLDQRKDESIERTFKGVARHF 1031
Score = 32.7 bits (73), Expect = 9.2 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Frame = -2
Query: 463 IDKLTKQTNEMKASKD-ETKVLEEKY------EKTLQDEKKDLEXXXXXXXXXQVKREDI 305 ID+LT + ++ + + E L+EK+ ++ K++LE + K + Sbjct: 777 IDQLTSEERDLLSRLNPEITELKEKFLLCKNSRIEIETRKEELETNLSTNLMRRQKELEA 836
Query: 304 MKKIRDLGPLPSDAFEKYQ-----KKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFT 140 + D LP +A K Q K+SL EL ML K +D NFT Sbjct: 837 IISSADSKTLPLEAESKEQELKSSKRSLDELTAML--------------KANVDAINNFT 882
Query: 139 EQREELHKRQAELDAGDEKIRELISVLDQRKD 44 + EEL +++ +L A + + + +V D KD Sbjct: 883 RKMEELKRQRDDLKALEANLEQ--TVQDGAKD 912
>tr|Q0E471|Q0E471_ORYSJ Os02g0133300 protein OS=Oryza sativa subsp. japonica GN=Os02g0133300 PE=4 SV=1 Length = 1154
Score = 199 bits (507), Expect = 4e-50 Identities = 98/157 (62%), Positives = 124/157 (78%) Frame = -2
Query: 472 VDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKKI 293 VD I+ T++ E+K +D+ K LE E+T+QD KDLE K+E+ MKKI Sbjct: 824 VDAINNFTRKMEELKRQRDDLKALEANLEQTVQDGAKDLEQLMSSRSMHLAKQEECMKKI 883
Query: 292 RDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHKR 113 RDLG LP+DAFE Y++K+ K+L KML++CNEQL+++SHVNKKALDQYVNFTEQRE+L +R Sbjct: 884 RDLGSLPADAFETYKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRR 943
Query: 112 QAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 +AELDAGD+KIRELISVLDQRKD SIERTFK VA++F Sbjct: 944 RAELDAGDQKIRELISVLDQRKDESIERTFKGVARHF 980
Score = 32.7 bits (73), Expect = 9.2 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Frame = -2
Query: 463 IDKLTKQTNEMKASKD-ETKVLEEKY------EKTLQDEKKDLEXXXXXXXXXQVKREDI 305 ID+LT + ++ + + E L+EK+ ++ K++LE + K + Sbjct: 726 IDQLTSEERDLLSRLNPEITELKEKFLLCKNSRIEIETRKEELETNLSTNLMRRQKELEA 785
Query: 304 MKKIRDLGPLPSDAFEKYQ-----KKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFT 140 + D LP +A K Q K+SL EL ML K +D NFT Sbjct: 786 IISSADSKTLPLEAESKEQELKSSKRSLDELTAML--------------KANVDAINNFT 831
Query: 139 EQREELHKRQAELDAGDEKIRELISVLDQRKD 44 + EEL +++ +L A + + + +V D KD Sbjct: 832 RKMEELKRQRDDLKALEANLEQ--TVQDGAKD 861
>tr|B8AH28|B8AH28_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05742 PE=4 SV=1 Length = 494
Score = 199 bits (507), Expect = 4e-50 Identities = 98/157 (62%), Positives = 124/157 (78%) Frame = -2
Query: 472 VDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKKI 293 VD I+ T++ E+K +D+ K LE E+T+QD KDLE K+E+ MKKI Sbjct: 164 VDAINNFTRKMEELKRQRDDLKALEANLEQTVQDGAKDLEQLMSSRSMHLAKQEECMKKI 223
Query: 292 RDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHKR 113 RDLG LP+DAFE Y++K+ K+L KML++CNEQL+++SHVNKKALDQYVNFTEQRE+L +R Sbjct: 224 RDLGSLPADAFETYKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRR 283
Query: 112 QAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 +AELDAGD+KIRELISVLDQRKD SIERTFK VA++F Sbjct: 284 RAELDAGDQKIRELISVLDQRKDESIERTFKGVARHF 320
Score = 32.7 bits (73), Expect = 9.2 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Frame = -2
Query: 463 IDKLTKQTNEMKASKD-ETKVLEEKY------EKTLQDEKKDLEXXXXXXXXXQVKREDI 305 ID+LT + ++ + + E L+EK+ ++ K++LE + K + Sbjct: 66 IDQLTSEERDLLSRLNPEITELKEKFLLCKNSRIEIETRKEELETNLSTNLMRRQKELEA 125
Query: 304 MKKIRDLGPLPSDAFEKYQ-----KKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFT 140 + D LP +A K Q K+SL EL ML K +D NFT Sbjct: 126 IISSADSKTLPLEAESKEQELKSSKRSLDELTAML--------------KANVDAINNFT 171
Query: 139 EQREELHKRQAELDAGDEKIRELISVLDQRKD 44 + EEL +++ +L A + + + +V D KD Sbjct: 172 RKMEELKRQRDDLKALEANLEQ--TVQDGAKD 201
>tr|Q8GU54|Q8GU54_ORYSA SMC3 protein OS=Oryza sativa GN=smc3 PE=2 SV=1 Length = 1205
Score = 199 bits (505), Expect = 7e-50 Identities = 98/157 (62%), Positives = 123/157 (78%) Frame = -2
Query: 472 VDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKKI 293 VD I+ T++ E+K +D K LE E+T+QD KDLE K+E+ MKKI Sbjct: 875 VDAINNFTRKIEELKRQRDNLKALEANLEQTVQDGAKDLEQLMSSRSMHLAKQEECMKKI 934
Query: 292 RDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHKR 113 RDLG LP+DAFE Y++K+ K+L KML++CNEQL+++SHVNKKALDQYVNFTEQRE+L +R Sbjct: 935 RDLGSLPADAFETYKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRR 994
Query: 112 QAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 +AELDAGD+KIRELISVLDQRKD SIERTFK VA++F Sbjct: 995 RAELDAGDQKIRELISVLDQRKDESIERTFKGVARHF 1031
>tr|Q8S8B4|Q8S8B4_ARATH Putative chromosome associated protein (Fragment) OS=Arabidopsis thaliana GN=At2g27170 PE=4 SV=1 Length = 1175
Score = 191 bits (484), Expect = 2e-47 Identities = 97/158 (61%), Positives = 119/158 (75%) Frame = -2
Query: 475 IVDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKK 296 + D ID+ TKQ ++K K + K LE+ + TLQD K LE K+++ KK Sbjct: 844 VCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKLEELFSLRNTLLAKQDEYTKK 903
Query: 295 IRDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHK 116 IR LGPL SDAF+ Y++K++KEL KMLH C+EQL+++SHVNKKALDQYVNFTEQREEL Sbjct: 904 IRGLGPLSSDAFDTYKRKNIKELQKMLHRCSEQLQQFSHVNKKALDQYVNFTEQREELQN 963
Query: 115 RQAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 RQAELDAGDEKI+ELI+VLDQRKD SIERTFK VA +F Sbjct: 964 RQAELDAGDEKIKELITVLDQRKDESIERTFKGVAHHF 1001
>tr|Q8H2D2|Q8H2D2_ARATH SMC3 protein OS=Arabidopsis thaliana GN=smc3 PE=2 SV=1 Length = 1205
Score = 191 bits (484), Expect = 2e-47 Identities = 97/158 (61%), Positives = 119/158 (75%) Frame = -2
Query: 475 IVDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKK 296 + D ID+ TKQ ++K K + K LE+ + TLQD K LE K+++ KK Sbjct: 874 VCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKLEELFSLRNTLLAKQDEYTKK 933
Query: 295 IRDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHK 116 IR LGPL SDAF+ Y++K++KEL KMLH C+EQL+++SHVNKKALDQYVNFTEQREEL Sbjct: 934 IRGLGPLSSDAFDTYKRKNIKELQKMLHRCSEQLQQFSHVNKKALDQYVNFTEQREELQN 993
Query: 115 RQAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 RQAELDAGDEKI+ELI+VLDQRKD SIERTFK VA +F Sbjct: 994 RQAELDAGDEKIKELITVLDQRKDESIERTFKGVAHHF 1031
>tr|Q6QU76|Q6QU76_ARATH SMC3 OS=Arabidopsis thaliana GN=SMC3 PE=2 SV=1 Length = 1204
Score = 191 bits (484), Expect = 2e-47 Identities = 97/158 (61%), Positives = 119/158 (75%) Frame = -2
Query: 475 IVDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKK 296 + D ID+ TKQ ++K K + K LE+ + TLQD K LE K+++ KK Sbjct: 873 VCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKLEELFSLRNTLLAKQDEYTKK 932
Query: 295 IRDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHK 116 IR LGPL SDAF+ Y++K++KEL KMLH C+EQL+++SHVNKKALDQYVNFTEQREEL Sbjct: 933 IRGLGPLSSDAFDTYKRKNIKELQKMLHRCSEQLQQFSHVNKKALDQYVNFTEQREELQN 992
Query: 115 RQAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 RQAELDAGDEKI+ELI+VLDQRKD SIERTFK VA +F Sbjct: 993 RQAELDAGDEKIKELITVLDQRKDESIERTFKGVAHHF 1030
>tr|Q56YN8|Q56YN8_ARATH Putative chromosome associated protein OS=Arabidopsis thaliana GN=At2g27170 PE=2 SV=1 Length = 1204
Score = 191 bits (484), Expect = 2e-47 Identities = 97/158 (61%), Positives = 119/158 (75%) Frame = -2
Query: 475 IVDQIDKLTKQTNEMKASKDETKVLEEKYEKTLQDEKKDLEXXXXXXXXXQVKREDIMKK 296 + D ID+ TKQ ++K K + K LE+ + TLQD K LE K+++ KK Sbjct: 873 VCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKLEELFSLRNTLLAKQDEYTKK 932
Query: 295 IRDLGPLPSDAFEKYQKKSLKELHKMLHNCNEQLKKYSHVNKKALDQYVNFTEQREELHK 116 IR LGPL SDAF+ Y++K++KEL KMLH C+EQL+++SHVNKKALDQYVNFTEQREEL Sbjct: 933 IRGLGPLSSDAFDTYKRKNIKELQKMLHRCSEQLQQFSHVNKKALDQYVNFTEQREELQN 992
Query: 115 RQAELDAGDEKIRELISVLDQRKDGSIERTFKSVAKNF 2 RQAELDAGDEKI+ELI+VLDQRKD SIERTFK VA +F Sbjct: 993 RQAELDAGDEKIKELITVLDQRKDESIERTFKGVAHHF 1030
|