NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919333
Clone id YMU001_000123_H04
Library
Length 306
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACGGAAAGCTAAGAGACTTCTTTCACAAGAATTTCGACGCCCCCCACGAGAGAGTGATGT
GGCAGAGCTAATGGGGATGACTGTGGAAAAATTGAGGTCAATATCCAGGTCTACTAAGGT
GTGCAAGTCTTTGGAGAAGCCAGTTGGCAAAGATCTGAACACCACCTTAGGGGACTTCAT
AGCTGATGAGACACTTGAAGATCCAGAATCAAAAATCATGAAGCAGCTGTTAAAGCAGGA
TGTGAAAAAGGTCTTAAAAACTCTCACAGAAAGAGAAAAAACTGTGATGATATCGAGATA
TGGGCT
■■Homology search results ■■ -
sp_hit_id P74565
Definition sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803)
Align length 101
Score (bit) 73.2
E-value 4.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919333|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H04.
         (306 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho...    73   4e-13
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microc...    70   3e-12
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...    69   7e-12
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...    68   1e-11
sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor rpoD OS=Strepto...    56   5e-08
sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor rpoD OS=Strepto...    56   5e-08
sp|O33662|RPOD_STRMU RNA polymerase sigma factor rpoD OS=Strepto...    56   5e-08
sp|P17531|RPOD_MYXXA RNA polymerase sigma factor rpoD OS=Myxococ...    56   5e-08
sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptosp...    55   1e-07
sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptosp...    55   1e-07
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot...    54   2e-07
sp|P43766|RPOD_HAEIN RNA polymerase sigma factor rpoD OS=Haemoph...    54   3e-07
sp|P33656|RPOD_CLOAB RNA polymerase sigma factor rpoD OS=Clostri...    54   3e-07
sp|P06224|RPOD_BACSU RNA polymerase sigma factor rpoD OS=Bacillu...    53   4e-07
sp|O83506|RPOD_TREPA RNA polymerase sigma factor rpoD OS=Trepone...    53   5e-07
sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacill...    52   7e-07
sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=S...    52   7e-07
sp|O66381|RPOD_BACHD RNA polymerase sigma factor rpoD OS=Bacillu...    52   7e-07
sp|O24744|RPOD_SHEVI RNA polymerase sigma factor rpoD OS=Shewane...    52   9e-07
sp|P43344|RPOD_SERMA RNA polymerase sigma factor rpoD (Fragment)...    52   9e-07
sp|P0A2E3|RPOD_SALTY RNA polymerase sigma factor rpoD OS=Salmone...    52   9e-07
sp|P0A2E4|RPOD_SALTI RNA polymerase sigma factor rpoD OS=Salmone...    52   9e-07
sp|P00579|RPOD_ECOLI RNA polymerase sigma factor rpoD OS=Escheri...    52   9e-07
sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor rpoD OS=Staphyl...    52   1e-06
sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor rpoD OS=Staphyl...    52   1e-06
sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor rpoD OS=Staphyl...    52   1e-06
sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor rpoD OS=Staphyl...    52   1e-06
sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor rpoD OS=Staphyl...    52   1e-06
sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor rpoD OS=Staphyl...    52   1e-06
sp|Q9ZMY3|RPOD_HELPJ RNA polymerase sigma factor rpoD OS=Helicob...    52   1e-06

>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD
           OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
          Length = 425

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 41/101 (40%), Positives = 59/101 (58%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  +LLSQE RR P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 278 KKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 337

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
             +  E PE ++                  RE+ V+  RYG
Sbjct: 338 EADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 377


>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
           OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
          Length = 416

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 39/101 (38%), Positives = 58/101 (57%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQE RR P E ++A  M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 269 KKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 328

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
             +  E PE ++                  RE+ V+  RYG
Sbjct: 329 EADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368


>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
           sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
          Length = 390

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 39/101 (38%), Positives = 57/101 (56%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  +LLSQE  R P E ++A  M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 243 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 302

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
             +  E PE ++                  RE+ V+  RYG
Sbjct: 303 ESDG-ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYG 342


>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
           PE=3 SV=2
          Length = 399

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 39/101 (38%), Positives = 57/101 (56%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  +LLSQE  R P E ++A  M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 252 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 311

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
             +  E PE ++                  RE+ V+  RYG
Sbjct: 312 EADG-ETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYG 351


>sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor rpoD
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=rpoD PE=3 SV=1
          Length = 369

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 32/100 (32%), Positives = 51/100 (51%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           + +R L QE  + P    +AE M MT +K+R I +  +   SLE P+G++ ++ LGDFI 
Sbjct: 221 REQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIE 280

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           DE +E+P                     +RE+ V+  R+G
Sbjct: 281 DEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFG 320


>sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor rpoD
           OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1
          Length = 369

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 32/100 (32%), Positives = 51/100 (51%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           + +R L QE  + P    +AE M MT +K+R I +  +   SLE P+G++ ++ LGDFI 
Sbjct: 221 REQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIE 280

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           DE +E+P                     +RE+ V+  R+G
Sbjct: 281 DEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFG 320


>sp|O33662|RPOD_STRMU RNA polymerase sigma factor rpoD
           OS=Streptococcus mutans GN=rpoD PE=3 SV=1
          Length = 371

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 32/100 (32%), Positives = 51/100 (51%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           + +R L QE  + P    +AE M MT +K+R I +  +   SLE P+G++ ++ LGDFI 
Sbjct: 223 REQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIE 282

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           DE +E+P                     +RE+ V+  R+G
Sbjct: 283 DEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG 322


>sp|P17531|RPOD_MYXXA RNA polymerase sigma factor rpoD OS=Myxococcus
           xanthus GN=rpoD PE=3 SV=1
          Length = 708

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 30/100 (30%), Positives = 51/100 (51%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           +  R L QE  R P   ++AE M + ++K+R + +  K   SLE P+G++ ++ LGDFI 
Sbjct: 560 RTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIE 619

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           D++L  P   ++                 RE+ V+  R+G
Sbjct: 620 DKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFG 659


>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor rpoD OS=Leptospira
           interrogans GN=rpoD PE=3 SV=1
          Length = 585

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 31/97 (31%), Positives = 47/97 (48%)
 Frame = +2

Query: 14  RLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADET 193
           RL  QEF R P   ++AE +G  V+K++ +    +   SLE PVG + ++ LGDFI D  
Sbjct: 440 RLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTE 499

Query: 194 LEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           +E P +                    RE+ V+  R+G
Sbjct: 500 VETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFG 536


>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor rpoD OS=Leptospira
           interrogans serogroup Icterohaemorrhagiae serovar
           copenhageni GN=rpoD PE=3 SV=1
          Length = 585

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 31/97 (31%), Positives = 47/97 (48%)
 Frame = +2

Query: 14  RLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIADET 193
           RL  QEF R P   ++AE +G  V+K++ +    +   SLE PVG + ++ LGDFI D  
Sbjct: 440 RLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTE 499

Query: 194 LEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           +E P +                    RE+ V+  R+G
Sbjct: 500 VETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFG 536
tr_hit_id Q9AYR7
Definition tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens
Align length 100
Score (bit) 81.6
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919333|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H04.
         (306 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P...    82   2e-14
tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell...    82   2e-14
tr|Q7V698|Q7V698_PROMM RNA polymerase sigma factor OS=Prochloroc...    75   2e-12
tr|A2C7M0|A2C7M0_PROM3 RNA polymerase sigma factor OS=Prochloroc...    75   2e-12
tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten...    74   4e-12
tr|Q7V2I0|Q7V2I0_PROMP RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|Q7U5C4|Q7U5C4_SYNPX RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|Q46GS6|Q46GS6_PROMT RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|Q3AWQ6|Q3AWQ6_SYNS9 RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|Q3ALS7|Q3ALS7_SYNSC RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|Q31C37|Q31C37_PROM9 RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|Q0I8I7|Q0I8I7_SYNS3 RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|A8G3L2|A8G3L2_PROM2 RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|A5GJC2|A5GJC2_SYNPW RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|A3PBM1|A3PBM1_PROM0 RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|A2C0V5|A2C0V5_PROM1 RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|A2BVF8|A2BVF8_PROM5 RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|A2BPX8|A2BPX8_PROMS RNA polymerase sigma factor OS=Prochloroc...    74   5e-12
tr|Q05YJ7|Q05YJ7_9SYNE RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|Q05RP2|Q05RP2_9SYNE RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|A4CRY9|A4CRY9_SYNPV RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|A3Z5L5|A3Z5L5_9SYNE RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|A3YZH3|A3YZH3_9SYNE RNA polymerase sigma factor OS=Synechococ...    74   5e-12
tr|B1X5Q2|B1X5Q2_PAUCH RNA polymerase sigma factor OS=Paulinella...    74   5e-12
tr|Q7VD88|Q7VD88_PROMA RNA polymerase sigma factor OS=Prochloroc...    73   8e-12
tr|A9BEB7|A9BEB7_PROM4 RNA polymerase sigma factor OS=Prochloroc...    73   8e-12
tr|Q84IZ6|Q84IZ6_9CHRO RNA polymerase sigma factor (Fragment) OS...    73   8e-12
tr|B5ILG7|B5ILG7_9CHRO DNA-directed RNA polymerase sigma subunit...    73   8e-12
tr|A5GSD3|A5GSD3_SYNR3 RNA polymerase sigma factor OS=Synechococ...    72   1e-11
tr|B1WS32|B1WS32_CYAA5 Group 1 sigma-70 RNA polymerase sigma fac...    71   3e-11

>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2
           SV=1
          Length = 579

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 42/100 (42%), Positives = 61/100 (61%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           KAKR+L QE  R  R  +VAEL+G+TVEKL+S+ +S K   S+E+P+GKD +TTLG+ +A
Sbjct: 426 KAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVA 485

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           D  ++ PE  I+                 RE+ V+  R+G
Sbjct: 486 DTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFG 525


>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella
           patens subsp. patens GN=PpSig2 PE=4 SV=1
          Length = 579

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 42/100 (42%), Positives = 61/100 (61%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           KAKR+L QE  R  R  +VAEL+G+TVEKL+S+ +S K   S+E+P+GKD +TTLG+ +A
Sbjct: 426 KAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVA 485

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           D  ++ PE  I+                 RE+ V+  R+G
Sbjct: 486 DTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFG 525


>tr|Q7V698|Q7V698_PROMM RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain MIT 9313) GN=sigA/
           rpoD PE=3 SV=1
          Length = 461

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 41/101 (40%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 314 KKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 373

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
             +T E+PE  +                  RE+ V+  RYG
Sbjct: 374 ESDT-ENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 413


>tr|A2C7M0|A2C7M0_PROM3 RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain MIT 9303)
           GN=P9303_07291 PE=3 SV=1
          Length = 444

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 41/101 (40%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 297 KKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 356

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
             +T E+PE  +                  RE+ V+  RYG
Sbjct: 357 ESDT-ENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 396


>tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160930 PE=4 SV=1
          Length = 591

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 37/100 (37%), Positives = 61/100 (61%)
 Frame = +2

Query: 5   KAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFIA 184
           KAK++L QE  R PR+ +VAEL+GM+VEKL+ I +S K   S+++ +GK+ + ++G+ IA
Sbjct: 440 KAKKMLIQEHGRQPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIA 499

Query: 185 DETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
           D+ +E PE  ++                 RE+ V+  R+G
Sbjct: 500 DKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRLRFG 539


>tr|Q7V2I0|Q7V2I0_PROMP RNA polymerase sigma factor
           OS=Prochlorococcus marinus subsp. pastoris (strain
           CCMP1378 / MED4) GN=sigA/ rpoD PE=3 SV=1
          Length = 396

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 40/101 (39%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 249 KKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 308

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
            +  +E+PE  +                  RE+ V+  RYG
Sbjct: 309 -EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 348


>tr|Q7U5C4|Q7U5C4_SYNPX RNA polymerase sigma factor OS=Synechococcus
           sp. (strain WH8102) GN=sigA/ rpoD PE=3 SV=1
          Length = 471

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 40/101 (39%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 324 KKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 383

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
            +  +E+PE  +                  RE+ V+  RYG
Sbjct: 384 -EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 423


>tr|Q46GS6|Q46GS6_PROMT RNA polymerase sigma factor
           OS=Prochlorococcus marinus (strain NATL2A) GN=PMN2A_1829
           PE=3 SV=1
          Length = 420

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 40/101 (39%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 271 KKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 330

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
            +  +E+PE  +                  RE+ V+  RYG
Sbjct: 331 -EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYG 370


>tr|Q3AWQ6|Q3AWQ6_SYNS9 RNA polymerase sigma factor OS=Synechococcus
           sp. (strain CC9902) GN=Syncc9902_1678 PE=3 SV=1
          Length = 451

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 40/101 (39%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 304 KKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 363

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
            +  +E+PE  +                  RE+ V+  RYG
Sbjct: 364 -EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 403


>tr|Q3ALS7|Q3ALS7_SYNSC RNA polymerase sigma factor OS=Synechococcus
           sp. (strain CC9605) GN=Syncc9605_0681 PE=3 SV=1
          Length = 435

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 40/101 (39%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   RKAKRLLSQEFRRPPRESDVAELMGMTVEKLRSISRSTKVCKSLEKPVGKDLNTTLGDFI 181
           +K  ++LSQEF R P E ++AE M MT+EKLR I++S ++  SLE P+GK+ ++ LGDFI
Sbjct: 288 KKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 347

Query: 182 ADETLEDPESKIMXXXXXXXXXXXXXXXXEREKTVMISRYG 304
            +  +E+PE  +                  RE+ V+  RYG
Sbjct: 348 -EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 387