BP919336
Clone id YMU001_000123_H07
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AATGGCTCAACTGAACATAGCATAAGGCCAGTGTAAACTGTCAACCAAGTGTACCCACAA
CATTATAGTGGTTGATCTTCTGGTTGAACGAGAAAACAATCTTTCTTGAAACCCTCTTTA
CCTGATTGCTCGCTGTAGGTATTATCATTACAAATAAATGAATAGCAGTGTCCATATGTA
TACAAAACTCTTGCCAGACTGAGAGTCCCACCTCCACATCCTGATGTGAATGGAGCATGC
GTCAATAACAAAGACCCAATCGCGTTTTAATACGACACAAAGCATGTTTGCTGATGTGAA
TGTCCTCTTGTATGATTCCATTTGCATATCAGAGTTATGCACTTAAACATTTCGCAGTGC
TGGCAACCGTTGTTCCAAATCGTCCACCTCAGAGCTTGTGCCTTGAGCTCTCTTGTTTGC
ACTTTTTCCCTTTGGAGCTGATGAGAGCTGGGCAGCAATATCGATGCCAATCTCATCCAG
CAGCTGATTAGTCAACTCCTCTGTCTCTTCCTCGGCTTCTTCATTATCCAGAGCATCATC
A
■■Homology search results ■■ -
sp_hit_id P54949
Definition sp|P54949|YXEJ_BACSU Uncharacterized protein yxeJ OS=Bacillus subtilis
Align length 78
Score (bit) 32.3
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919336|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H07.
(541 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P54949|YXEJ_BACSU Uncharacterized protein yxeJ OS=Bacillus su... 32 1.5
sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=... 32 2.6
sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=... 32 2.6
sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=... 32 2.6
sp|Q54BD5|TRM13_DICDI tRNA guanosine-2'-O-methyltransferase TRM1... 31 4.4
sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic sub... 31 4.5
sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=... 30 5.8
sp|P75517|GALE_MYCPN UDP-glucose 4-epimerase OS=Mycoplasma pneum... 30 7.6
sp|Q7A1I3|LTAS_STAAW Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q6GBB1|LTAS_STAAS Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q6GIS3|LTAS_STAAR Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q7A6U1|LTAS_STAAN Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q99VQ4|LTAS_STAAM Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q5HHV4|LTAS_STAAC Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q2YSL2|LTAS_STAAB Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q2G093|LTAS_STAA8 Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|Q2FIS2|LTAS_STAA3 Glycerol phosphate lipoteichoic acid syntha... 30 9.9
sp|P47364|GALE_MYCGE UDP-glucose 4-epimerase OS=Mycoplasma genit... 30 9.9

>sp|P54949|YXEJ_BACSU Uncharacterized protein yxeJ OS=Bacillus
subtilis GN=yxeJ PE=4 SV=1
Length = 75

Score = 32.3 bits (72), Expect = 1.5
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = -1

Query: 238 MLHSHQDVEVGLSVWQEFCIHMDTAIHLFVMIIPTASNQVKRVSRKIVFSFNQKINHYNV 59
+++SHQ + GL++W + LF I TAS + + ++ N +I Y +
Sbjct: 3 LINSHQSADSGLNIWSQ----------LFFYTIVTASEWIGGLQKRRKGKGNGEI-LYEI 51

Query: 58 VGTLG*QFTLALCYVQLS 5
+G + L+LC+++LS
Sbjct: 52 IGRI-----LSLCFIRLS 64


>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a
OS=Pongo abelii GN=CHMP1A PE=2 SV=1
Length = 196

Score = 31.6 bits (70), Expect = 2.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2

Query: 468 GIDIAAQLSSAPKGKSANKRAQGTSSEVDDLEQRLPALRN 349
G+++ QLS P+G SA + S E D L +RL ALRN
Sbjct: 158 GLEVLDQLSQLPEGASAVGESSVRSQE-DQLSRRLAALRN 196


>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus
musculus GN=Chmp1a PE=1 SV=1
Length = 196

Score = 31.6 bits (70), Expect = 2.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2

Query: 468 GIDIAAQLSSAPKGKSANKRAQGTSSEVDDLEQRLPALRN 349
G+++ QLS P+G SA + S E D L +RL ALRN
Sbjct: 158 GLEVLDQLSQLPEGASAVGESSVRSQE-DQLSRRLAALRN 196


>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a
OS=Homo sapiens GN=CHMP1A PE=1 SV=1
Length = 196

Score = 31.6 bits (70), Expect = 2.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2

Query: 468 GIDIAAQLSSAPKGKSANKRAQGTSSEVDDLEQRLPALRN 349
G+++ QLS P+G SA + S E D L +RL ALRN
Sbjct: 158 GLEVLDQLSQLPEGASAVGESSVRSQE-DQLSRRLAALRN 196


>sp|Q54BD5|TRM13_DICDI tRNA guanosine-2'-O-methyltransferase TRM13
homolog OS=Dictyostelium discoideum GN=trm13 PE=3 SV=1
Length = 525

Score = 30.8 bits (68), Expect = 4.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3

Query: 167 CYSFICNDNTYSEQSGKEGFKKDCFLVQPEDQPL*CCGYTWLTV 36
C ICN NTYS QS + KD + P + L C +W T+
Sbjct: 389 CCHHICNFNTYSNQS----YLKDQLNITPLEFQLICSISSWATI 428


>sp|P97313|PRKDC_MOUSE DNA-dependent protein kinase catalytic
subunit OS=Mus musculus GN=Prkdc PE=1 SV=2
Length = 4128

Score = 30.8 bits (68), Expect = 4.5
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = -1

Query: 472 DWHRYCCPALISSKGKKCKQESSRHKL*GGRFGTTVASTAKCLSA*L*YANGIIQEDIHI 293
D +Y C AL + GK+ + ++K A CL+ L + II+ D+
Sbjct: 696 DTEKYSCFALFAKFGKEVSVKMKQYK---------DELLASCLTFVLSLPHDIIELDVRA 746

Query: 292 SKHALCRIKTRLGLCY*RMLHSHQDV-EVGLSVWQEFCIHMDTAI 161
AL ++ +LGL SH + E+GL +E+ +H+D +I
Sbjct: 747 YVPAL-QMAFKLGL-------SHMPLAEIGLHALKEWSVHIDKSI 783


>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a
OS=Danio rerio GN=chmp1a PE=2 SV=1
Length = 198

Score = 30.4 bits (67), Expect = 5.8
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2

Query: 468 GIDIAAQLSSAPKGKSANKRAQGTSSEVDD-LEQRLPALRN 349
G+++ QLS P G SA + E +D L +RL ALRN
Sbjct: 158 GLEVEDQLSQLPAGASALGETSARAQEKEDQLSRRLAALRN 198


>sp|P75517|GALE_MYCPN UDP-glucose 4-epimerase OS=Mycoplasma
pneumoniae GN=galE PE=3 SV=1
Length = 338

Score = 30.0 bits (66), Expect = 7.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2

Query: 264 RDWVFVIDACSIHIRMWRW 208
RD++ V+D C H+ W+W
Sbjct: 230 RDYIHVVDLCDAHLLAWKW 248


>sp|Q7A1I3|LTAS_STAAW Glycerol phosphate lipoteichoic acid synthase
OS=Staphylococcus aureus (strain MW2) GN=ltaS PE=3 SV=1
Length = 646

Score = 29.6 bits (65), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1

Query: 196 WQEFCIHMDTAIHLFVMIIPTASNQVKRVSRKIV 95
W +F +DT ++LF++I T K S+K V
Sbjct: 122 WYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFV 155


>sp|Q6GBB1|LTAS_STAAS Glycerol phosphate lipoteichoic acid synthase
OS=Staphylococcus aureus (strain MSSA476) GN=ltaS PE=3
SV=1
Length = 646

Score = 29.6 bits (65), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1

Query: 196 WQEFCIHMDTAIHLFVMIIPTASNQVKRVSRKIV 95
W +F +DT ++LF++I T K S+K V
Sbjct: 122 WYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFV 155


tr_hit_id A9NQ75
Definition tr|A9NQ75|A9NQ75_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 42
Score (bit) 60.1
E-value 7.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919336|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_H07.
(541 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NQ75|A9NQ75_PICSI Putative uncharacterized protein OS=Picea... 60 7e-08
tr|B6T5E0|B6T5E0_MAIZE Charged multivesicular body protein 2b OS... 52 2e-05
tr|Q9AUZ6|Q9AUZ6_ORYSJ Os10g0476400 protein OS=Oryza sativa subs... 52 3e-05
tr|Q7G7X3|Q7G7X3_ORYSA Putative uncharacterized protein OSJNBb00... 52 3e-05
tr|A2Z8I6|A2Z8I6_ORYSI Putative uncharacterized protein OS=Oryza... 52 3e-05
tr|Q9ZWB5|Q9ZWB5_ARATH F21M11.12 protein OS=Arabidopsis thaliana... 50 6e-05
tr|Q941D5|Q941D5_ARATH At1g03950/F21M11_12 OS=Arabidopsis thalia... 50 6e-05
tr|A9PJA3|A9PJA3_POPJC Putative uncharacterized protein OS=Popul... 50 8e-05
tr|A7Q1Q7|A7Q1Q7_VITVI Chromosome chr7 scaffold_44, whole genome... 49 2e-04
tr|A5B0E1|A5B0E1_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04
tr|B7FHD8|B7FHD8_MEDTR Putative uncharacterized protein OS=Medic... 47 8e-04
tr|A7QC26|A7QC26_VITVI Chromosome chr10 scaffold_76, whole genom... 45 0.002
tr|A5AK81|A5AK81_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002
tr|Q6ASS4|Q6ASS4_ORYSJ Os03g0639800 protein OS=Oryza sativa subs... 45 0.003
tr|Q0WTY4|Q0WTY4_ARATH Putative uncharacterized protein At5g4456... 45 0.003
tr|B8AN41|B8AN41_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|B3H7E8|B3H7E8_ARATH Uncharacterized protein At5g44560.2 OS=Ar... 45 0.003
tr|A3AKQ8|A3AKQ8_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.003
tr|Q9FGV7|Q9FGV7_ARATH Gb|AAD10675.1 OS=Arabidopsis thaliana PE=... 44 0.004
tr|B6TQT7|B6TQT7_MAIZE Charged multivesicular body protein 2a OS... 42 0.027
tr|A9T898|A9T898_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079
tr|Q06HZ8|Q06HZ8_9ROSA Granule-bound starch synthase (Fragment) ... 33 9.5

>tr|A9NQ75|A9NQ75_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 212

Score = 60.1 bits (144), Expect = 7e-08
Identities = 33/42 (78%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQGT-SSEVDDLEQRLPALRN 349
IGIDIA+QLSSAPKGK A +RAQG SS+V DLEQRL ALRN
Sbjct: 170 IGIDIASQLSSAPKGKIAERRAQGAGSSDVADLEQRLAALRN 211


>tr|B6T5E0|B6T5E0_MAIZE Charged multivesicular body protein 2b
OS=Zea mays PE=2 SV=1
Length = 212

Score = 52.0 bits (123), Expect = 2e-05
Identities = 27/42 (64%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQ-GTSSEVDDLEQRLPALRN 349
IG+DIA+QLSSAPKGK A K+ Q SSE+++LE+RL AL+N
Sbjct: 170 IGVDIASQLSSAPKGKIAGKKVQVDGSSELEELEKRLAALKN 211


>tr|Q9AUZ6|Q9AUZ6_ORYSJ Os10g0476400 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0026O12.13 PE=2 SV=1
Length = 212

Score = 51.6 bits (122), Expect = 3e-05
Identities = 26/42 (61%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQG-TSSEVDDLEQRLPALRN 349
IG+DIA+QLSSAPKG+ K+ Q SSE+D+LE+RL AL+N
Sbjct: 170 IGVDIASQLSSAPKGRITGKKVQADESSELDELEKRLAALKN 211


>tr|Q7G7X3|Q7G7X3_ORYSA Putative uncharacterized protein
OSJNBb0044B19.7 OS=Oryza sativa GN=OSJNBb0044B19.7 PE=4
SV=1
Length = 212

Score = 51.6 bits (122), Expect = 3e-05
Identities = 26/42 (61%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQG-TSSEVDDLEQRLPALRN 349
IG+DIA+QLSSAPKG+ K+ Q SSE+D+LE+RL AL+N
Sbjct: 170 IGVDIASQLSSAPKGRITGKKVQADESSELDELEKRLAALKN 211


>tr|A2Z8I6|A2Z8I6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_34021 PE=4 SV=1
Length = 212

Score = 51.6 bits (122), Expect = 3e-05
Identities = 26/42 (61%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQG-TSSEVDDLEQRLPALRN 349
IG+DIA+QLSSAPKG+ K+ Q SSE+D+LE+RL AL+N
Sbjct: 170 IGVDIASQLSSAPKGRITGKKVQADESSELDELEKRLAALKN 211


>tr|Q9ZWB5|Q9ZWB5_ARATH F21M11.12 protein OS=Arabidopsis thaliana
GN=F21M11.12 PE=4 SV=1
Length = 213

Score = 50.4 bits (119), Expect = 6e-05
Identities = 27/41 (65%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQGT-SSEVDDLEQRLPALR 352
IGIDIA+QLSSAPKGK K+A+ SS +D+LE+RL ALR
Sbjct: 173 IGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLAALR 213


>tr|Q941D5|Q941D5_ARATH At1g03950/F21M11_12 OS=Arabidopsis thaliana
GN=At1g03950 PE=2 SV=1
Length = 210

Score = 50.4 bits (119), Expect = 6e-05
Identities = 27/41 (65%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQGT-SSEVDDLEQRLPALR 352
IGIDIA+QLSSAPKGK K+A+ SS +D+LE+RL ALR
Sbjct: 170 IGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLAALR 210


>tr|A9PJA3|A9PJA3_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 212

Score = 50.1 bits (118), Expect = 8e-05
Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANK-RAQGTSSEVDDLEQRLPALRN 349
IG+D+A+QLS+APKGK A K R +SS +D+LE+RL LRN
Sbjct: 170 IGVDVASQLSAAPKGKIAGKNRENASSSGIDELEKRLATLRN 211


>tr|A7Q1Q7|A7Q1Q7_VITVI Chromosome chr7 scaffold_44, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028560001
PE=4 SV=1
Length = 212

Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/42 (57%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQGT-SSEVDDLEQRLPALRN 349
IG+D+A+QLS+APKGK A K+ + SS + +LE+RL ALRN
Sbjct: 170 IGVDVASQLSAAPKGKIARKKTEDVGSSGISELEKRLAALRN 211


>tr|A5B0E1|A5B0E1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_017410 PE=4 SV=1
Length = 229

Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/42 (57%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = -2

Query: 471 IGIDIAAQLSSAPKGKSANKRAQGT-SSEVDDLEQRLPALRN 349
IG+D+A+QLS+APKGK A K+ + SS + +LE+RL ALRN
Sbjct: 187 IGVDVASQLSAAPKGKIARKKTEDVGSSGISELEKRLAALRN 228