NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919345
Clone id YMU001_000124_A05
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTACTCGACACGAACAACGAAATAATGAAGCTCCACTTCTAGAAGCATTTGGCCCAAAG
TCTAGCGCCCCTTTCAGTACTTCTTTTTATACTAAATAATCCACAAAGTGAAACTGCATT
GGGATCACTTTGCCGATATGCAACCATGCACTGATCTGACCTACTTGACCCCCAAGGCTC
ATGTTCACAGACAATGAAGCCCCAAAAGCAACTACTCCAAAAGCTATGTGCCCTCCAAAA
CTCCCAGCTAAAAATCTGATGCACAAAATCCAGCTCCAGAAAAGCAACACCATGTCATCA
TTGTACAACTGCCATGTCAGCATTGCGCACAGCCTAGCACATCAGCAATCATACGGCCTA
TGATTTGCACCACATATTCCGAGAGATTTTGGATCTTCTAATGGAATGTCAACACGTCAT
CACATTGATAGTCACACCCCTCCGAGCTCCACAACTCCTAT
■■Homology search results ■■ -
sp_hit_id O59276
Definition sp|O59276|Y1571_PYRHO UPF0118 membrane protein PH1571 OS=Pyrococcus horikoshii
Align length 48
Score (bit) 30.0
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919345|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A05.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O59276|Y1571_PYRHO UPF0118 membrane protein PH1571 OS=Pyrococ...    30   5.0  
sp|Q17704|STDH3_CAEEL Putative steroid dehydrogenase 3 OS=Caenor...    29   8.5  
sp|Q0UJC3|SIP5_PHANO Protein SIP5 OS=Phaeosphaeria nodorum GN=SI...    29   8.5  
sp|Q5E4Z3|NAGK_VIBF1 N-acetyl-D-glucosamine kinase OS=Vibrio fis...    29   8.5  
sp|Q30WM4|BUK_DESDG Probable butyrate kinase OS=Desulfovibrio de...    29   8.5  

>sp|O59276|Y1571_PYRHO UPF0118 membrane protein PH1571 OS=Pyrococcus
           horikoshii GN=PH1571 PE=3 SV=1
          Length = 341

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 251 LAGSFGGHIAFGVVAFGASLSVNMSLGGQVGQISAWLHIGKVIPMQFH 108
           L G FGG IAFG V     +   +++G  +  I AW  IG   P + H
Sbjct: 292 LVGIFGGWIAFGAVGI---ILGPIAIGLLLALIDAWREIGTKQPSKAH 336


>sp|Q17704|STDH3_CAEEL Putative steroid dehydrogenase 3
           OS=Caenorhabditis elegans GN=stdh-3 PE=2 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 TTAMSALRTA*HISNHTAYDLHHIFREILDLLMEC 409
           T A SAL T  H S  T Y  H I  E+L L  EC
Sbjct: 254 TFAKSALNTVGHTSQTTGYINHQIQCEMLALFPEC 288


>sp|Q0UJC3|SIP5_PHANO Protein SIP5 OS=Phaeosphaeria nodorum GN=SIP5
           PE=3 SV=3
          Length = 854

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = +3

Query: 243 PS*KSDAQNPAPEKQHHVIIVQLP--CQHCAQPSTSAIIRP 359
           P    DA+ PAPE Q    +V  P  C  C QP       P
Sbjct: 332 PEHHGDAETPAPEPQEESQLVSEPAACPFCVQPEFGVTYEP 372


>sp|Q5E4Z3|NAGK_VIBF1 N-acetyl-D-glucosamine kinase OS=Vibrio
           fischeri (strain ATCC 700601 / ES114) GN=nagK PE=3 SV=1
          Length = 303

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 251 LAGSFGGHIAFGVVAFGASLSVNMSLGGQVGQISAWLHIGKVIPM 117
           L   FGG + F   AF     V   LG     I AW H+G+  P+
Sbjct: 130 LGTGFGGGLIFDGKAFSGYSHVAGELGHSRLPIDAWFHLGENAPL 174


>sp|Q30WM4|BUK_DESDG Probable butyrate kinase OS=Desulfovibrio
           desulfuricans (strain G20) GN=buk PE=3 SV=1
          Length = 372

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 257 RFLAGSFGGHIAFGVVAFGASLSVNMSLGGQ 165
           RFL G FGG I+ G    G  + VN +L G+
Sbjct: 181 RFLVGHFGGGISVGAHRHGRVVDVNNALEGE 211
tr_hit_id Q29J88
Definition tr|Q29J88|Q29J88_DROPS GA18086 OS=Drosophila pseudoobscura pseudoobscura
Align length 103
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919345|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_A05.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q29J88|Q29J88_DROPS GA18086 OS=Drosophila pseudoobscura pseud...    36   1.1  
tr|B4H3X6|B4H3X6_DROPE GL15126 OS=Drosophila persimilis GN=GL151...    36   1.1  
tr|Q28SK2|Q28SK2_JANSC Beta-lactamase-like protein OS=Jannaschia...    34   4.1  
tr|A4EGH7|A4EGH7_9RHOB Beta-lactamase-like protein OS=Roseobacte...    34   4.1  
tr|B3RNZ9|B3RNZ9_TRIAD Putative uncharacterized protein OS=Trich...    34   4.1  
tr|Q8AAF7|Q8AAF7_BACTN ABC transporter ATP-binding protein OS=Ba...    33   7.0  
tr|B4WPH6|B4WPH6_9SYNE Cell cycle protein, FtsW/RodA/SpoVE famil...    33   7.0  
tr|A5E1H3|A5E1H3_LODEL Putative uncharacterized protein OS=Lodde...    33   9.2  

>tr|Q29J88|Q29J88_DROPS GA18086 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA18086 PE=4 SV=2
          Length = 1445

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +1

Query: 136  ICNHALI*PT*PPRLMFTDNEAPKATTPKA-MCPPKLPAKNLMHKIQLQKSNTMSSLYNC 312
            I NHA   P  PP  +++         P + M  P L  + L H++  QK       Y  
Sbjct: 1187 IYNHACYAPPPPPPGLYSHQHQLGMAVPMSPMQKPPLQQQLLQHRLLQQKRQLFQKQYAL 1246

Query: 313  HVSIA----HSLAHQQSYGL*FAPHIPRDFGSSNGMSTRHHID 429
               +A    H   HQQ + L    H     G  +G S  H ++
Sbjct: 1247 EAQLAGRHHHQQHHQQQHQLHQTAHFNHGHGHGHGHSLNHGLN 1289


>tr|B4H3X6|B4H3X6_DROPE GL15126 OS=Drosophila persimilis GN=GL15126
            PE=4 SV=1
          Length = 1366

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +1

Query: 136  ICNHALI*PT*PPRLMFTDNEAPKATTPKA-MCPPKLPAKNLMHKIQLQKSNTMSSLYNC 312
            I NHA   P  PP  +++         P + M  P L  + L H++  QK       Y  
Sbjct: 1126 IYNHACYAPPPPPPGLYSHQHQLGMAVPMSPMQKPPLQQQLLQHRLLQQKRQLFQKQYAL 1185

Query: 313  HVSIA----HSLAHQQSYGL*FAPHIPRDFGSSNGMSTRHHID 429
               +A    H   HQQ + L    H     G  +G S  H ++
Sbjct: 1186 EAQLAGRHHHQQHHQQQHQLHQTAHFNHGHGHGHGHSLNHGLN 1228


>tr|Q28SK2|Q28SK2_JANSC Beta-lactamase-like protein OS=Jannaschia
           sp. (strain CCS1) GN=Jann_1393 PE=4 SV=1
          Length = 308

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 114 LHWDHFADMQPCTDLTYLTPKAHVHRQ*SPKSNYSKSY 227
           LHWDH  +M+   +  Y+ PKA +    +P   Y ++Y
Sbjct: 100 LHWDHVQNMKEFKNARYIAPKAEIEMAFNPLPLYYRTY 137


>tr|A4EGH7|A4EGH7_9RHOB Beta-lactamase-like protein OS=Roseobacter
           sp. CCS2 GN=RCCS2_08919 PE=4 SV=1
          Length = 310

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 114 LHWDHFADMQPCTDLTYLTPKAHVHRQ*SPKSNYSKSY 227
           LHWDH  +M+   +  Y+ PKA +    +P   Y ++Y
Sbjct: 100 LHWDHVQNMKQFKNARYIAPKAEIEMAYNPLPLYYRTY 137


>tr|B3RNZ9|B3RNZ9_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_53351 PE=4 SV=1
          Length = 492

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
 Frame = +1

Query: 160 PT*PPRLMFTDN-EAPKATTPKAMCPPKLPAKNLMHKIQLQKSNTMSSLYNCHVSIAHSL 336
           P  PPR+M TD+   P   TPK   PP  P K+        K+ T SS      S   SL
Sbjct: 291 PNRPPRIMRTDDVNGPDKKTPKRPPPPSCPPKS-------NKNTTSSSKIE---SSVRSL 340

Query: 337 AHQQSYGL*FAPHIPRDFGSSNGMSTRHHIDSHTPPSSTTP 459
           A+  S     A  +     SS    +R       PP  TTP
Sbjct: 341 ANSASRAT--ASIVASSSSSSQVNPSRPPPPKVPPPKRTTP 379


>tr|Q8AAF7|Q8AAF7_BACTN ABC transporter ATP-binding protein
           OS=Bacteroides thetaiotaomicron GN=BT_0508 PE=3 SV=1
          Length = 609

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 299 DDMVLLFWSWILCIRFLAG---SFGGHIAFGVVAFGASLSVNMSLGGQVGQIS 150
           D  VL+ W W+  +  +AG    +G  +A  V AF     + + L G +G++S
Sbjct: 67  DSSVLIHWGWVAFVGLVAGLLLLYGALMASHVAAFRILYGLRIRLSGHIGRLS 119


>tr|B4WPH6|B4WPH6_9SYNE Cell cycle protein, FtsW/RodA/SpoVE family
           OS=Synechococcus sp. PCC 7335 GN=S7335_1619 PE=4 SV=1
          Length = 431

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
 Frame = -1

Query: 293 MVLLFWSWILCIRFL------AGSFGGHIAFGV---VAFGASLSVNMSLG 171
           MVLLF  W++C+R +        +FG  +A GV   + F A ++++M++G
Sbjct: 332 MVLLFAFWLICLRLVMIAHGAKDNFGSLLAIGVLSMIVFQAMINISMTIG 381


>tr|A5E1H3|A5E1H3_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_03460 PE=4 SV=1
          Length = 1051

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = +3

Query: 123 DHFADMQPCTDLTYL--TPKAHVHRQ*SPKSNYSKSYVPSKTPS*KSDAQNPAPEKQ--- 287
           D   D++P +  TY+  TP  H H    P  +    +  + T   +   Q    ++Q   
Sbjct: 248 DRLLDIEPVSSATYIPHTPVIHDHTYEGPHQHQHHKHSHTHTHQQQQQQQQQQQQQQNQQ 307

Query: 288 HHVIIVQLPCQH--CAQPSTSAIIRP 359
           HH   +Q  CQH     PS S  + P
Sbjct: 308 HHQQQLQQQCQHQQHTSPSKSIFVAP 333