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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919477
Clone id YMU001_000125_E08
Library
Length 219
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAGAGGATCTTCTGTGCTTCCCTTGGCCCTCCCAAGCTGGGATTGGTCTGTGTTTTCAT
CCAATTTTATTGACTCAGTGCGCTCAAGCACCTGTTCTGTATTGACTCGTGCAAGTCTCT
CTGGGTCCACAATCTCTTGCGGGCCTTGATTGGCTGCCTTGTCTCTCTCTTGCCCCTGAC
TGATAAGCTCCCACTCTCCCATTGAAGCTGGGCTTGTTG
■■Homology search results ■■ -
sp_hit_id Q7RYI3
Definition sp|Q7RYI3|SWC5_NEUCR SWR1-complex protein 5 OS=Neurospora crassa
Align length 56
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919477|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_E08.
         (219 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7RYI3|SWC5_NEUCR SWR1-complex protein 5 OS=Neurospora crassa...    34   0.26 
sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B...    34   0.26 
sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochl...    32   1.3  
sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B O...    31   1.7  
sp|Q570R7|PIF7_ARATH Transcription factor PIF7 OS=Arabidopsis th...    30   3.7  
sp|A2SJA7|SYS_METPP Seryl-tRNA synthetase OS=Methylibium petrole...    30   4.8  
sp|Q030K2|IF2_LACLS Translation initiation factor IF-2 OS=Lactoc...    30   4.8  
sp|A2RM37|IF2_LACLM Translation initiation factor IF-2 OS=Lactoc...    30   4.8  
sp|Q9X764|IF2_LACLC Translation initiation factor IF-2 OS=Lactoc...    30   4.8  
sp|A6VDK0|OPGH_PSEA7 Glucans biosynthesis glucosyltransferase H ...    29   6.3  
sp|Q57753|Y305_METJA Uncharacterized protein MJ0305 OS=Methanoca...    29   8.3  
sp|Q58907|RGYR_METJA Reverse gyrase OS=Methanocaldococcus jannas...    29   8.3  
sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=...    29   8.3  
sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=...    29   8.3  

>sp|Q7RYI3|SWC5_NEUCR SWR1-complex protein 5 OS=Neurospora crassa
           GN=swc-5 PE=3 SV=1
          Length = 342

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -3

Query: 172 QERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQLGRAKGSTEDP 5
           ++R  AA  GP  I      A++ +E V+ RT + K DE+ D +    AK S++ P
Sbjct: 113 EKRSTAAASGPVTIDVDALWAQMISEPVIPRTSTAKPDESADPANCDIAKSSSQQP 168


>sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B
           OS=Mus musculus GN=Eif5b PE=1 SV=2
          Length = 1216

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = -3

Query: 217 TSPASMGEWELISQGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQ 38
           T  A + +WE ++  +ER+K  N    E+ +       N E+  E  E  + +E+ D+ +
Sbjct: 497 TEDAGLDDWEAMASDEEREKEGNMIHIEVEE-------NPEEEEEEEEEEEEEESEDEEE 549

Query: 37  LGRAKGSTED 8
            G ++GS  D
Sbjct: 550 EGDSEGSDGD 559


>sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2
           OS=Prochlorococcus marinus subsp. pastoris (strain
           CCMP1378 / MED4) GN=infB PE=3 SV=1
          Length = 1169

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = -2

Query: 215 KPSFNGRVGAYQSGARERQGSQSR---PARDCGPRETCTSQYRTGA*AH*VNKIG*KHRP 45
           +PS N ++ A + G + RQG  +R   P R   P    T  YR GA     N+ G ++R 
Sbjct: 275 QPSSNTQISANRPGGQNRQGVPNREGGPYRQGSPNRPGT-PYRQGA----PNRPGGQNRQ 329

Query: 44  -IPAWEGQGKHRRSS 3
            +P  EG G +R+ S
Sbjct: 330 GVPNREGGGPYRQGS 344


>sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B
           OS=Rattus norvegicus GN=Eif5b PE=1 SV=1
          Length = 1216

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 217 TSPASMGEWELISQGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQ 38
           T  A + +WE ++  +ER+K  N    E+ +       N E+  E  E    +++ D+  
Sbjct: 497 TEDAGLDDWEAMASDEEREKEGNMIHIEVEE-------NPEEEEEEEEDEDEEDSEDEED 549

Query: 37  LGRAKGSTED 8
            G ++GS  D
Sbjct: 550 EGDSEGSDGD 559


>sp|Q570R7|PIF7_ARATH Transcription factor PIF7 OS=Arabidopsis
           thaliana GN=BHLH72 PE=1 SV=2
          Length = 366

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 210 QLQWESGSLSVRGKRETRQPIKARKRLWTQ 121
           +L WE+G L+V G  +  +P  +   +WTQ
Sbjct: 8   ELTWENGQLTVHGLGDEVEPTTSNNPIWTQ 37


>sp|A2SJA7|SYS_METPP Seryl-tRNA synthetase OS=Methylibium
           petroleiphilum (strain PM1) GN=serS PE=3 SV=1
          Length = 432

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 148 QGPQEIVDPERLARVNTEQ--VLERTESIKLDENTDQSQLGRAKGSTED 8
           + PQ  +D ER   +  E+  +  RTE ++   N+   Q+G+ K   ED
Sbjct: 22  KSPQPFLDVERFTALEAERKAIQTRTEELQARRNSLSKQIGQLKAKGED 70


>sp|Q030K2|IF2_LACLS Translation initiation factor IF-2
           OS=Lactococcus lactis subsp. cremoris (strain SK11)
           GN=infB PE=3 SV=1
          Length = 950

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -3

Query: 211 PASMGEWELISQGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQLG 32
           PA  G+    +QGQ+RDK A+ G     D    A        +R    K D N D ++ G
Sbjct: 256 PAGQGQ----NQGQKRDKFASSGSSSTSDTFTPAASGKNNRRDRDRK-KTDSNRDNTKDG 310

Query: 31  RAKG 20
             KG
Sbjct: 311 NRKG 314


>sp|A2RM37|IF2_LACLM Translation initiation factor IF-2
           OS=Lactococcus lactis subsp. cremoris (strain MG1363)
           GN=infB PE=3 SV=1
          Length = 950

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -3

Query: 211 PASMGEWELISQGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQLG 32
           PA  G+    +QGQ+RDK A+ G     D    A        +R    K D N D ++ G
Sbjct: 256 PAGQGQ----NQGQKRDKFASSGSSSTSDTFTPAASGKNNRRDRDRK-KTDSNRDNTKDG 310

Query: 31  RAKG 20
             KG
Sbjct: 311 NRKG 314


>sp|Q9X764|IF2_LACLC Translation initiation factor IF-2
           OS=Lactococcus lactis subsp. cremoris GN=infB PE=3 SV=1
          Length = 950

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -3

Query: 211 PASMGEWELISQGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQLG 32
           PA  G+    +QGQ+RDK A+ G     D    A        +R    K D N D ++ G
Sbjct: 256 PAGQGQ----NQGQKRDKFASSGSSSTSDTFTPAASGKNNRRDRDRK-KTDSNRDNTKDG 310

Query: 31  RAKG 20
             KG
Sbjct: 311 NRKG 314


>sp|A6VDK0|OPGH_PSEA7 Glucans biosynthesis glucosyltransferase H
           OS=Pseudomonas aeruginosa (strain PA7) GN=opgH PE=3 SV=1
          Length = 860

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 178 QGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQLGR-AKGSTEDP 5
           +G+   KA  +GP+++    RLA ++    L R  +   +EN D   LGR  K   +DP
Sbjct: 780 RGERIGKAIEKGPEQLDGATRLALLSDPVALSRLHAQVWEENRD-DWLGRWRKAEADDP 837
tr_hit_id Q9FMN1
Definition tr|Q9FMN1|Q9FMN1_ARATH Genomic DNA, chromosome 5, P1 clone:MBD2 OS=Arabidopsis thaliana
Align length 61
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919477|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_E08.
         (219 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FMN1|Q9FMN1_ARATH Genomic DNA, chromosome 5, P1 clone:MBD2 ...    33   5.5  

>tr|Q9FMN1|Q9FMN1_ARATH Genomic DNA, chromosome 5, P1 clone:MBD2
           OS=Arabidopsis thaliana GN=At5g42880 PE=4 SV=1
          Length = 751

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 193 WELISQGQERDKAANQGPQEIVDPERLARVNTEQVLERTESIKLDENTDQSQLGRAKGST 14
           +EL  Q  E ++ AN    EIV    +A+    ++LE+ E +  + +  +++L  A G  
Sbjct: 583 YELSKQALESEEEANTRLSEIVSQIEVAKEEESRILEKLEEVNREMSVRKAELKEANGKA 642

Query: 13  E 11
           E
Sbjct: 643 E 643