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NBDC - LSDB Archive
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BP919506
Clone id YMU001_000125_H03
Library
Length 387
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000125_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAAAACAAAACCGATCAAATCTGGACTTGCTAGCTCAGTTAAACTGTTCTTCCTAGACCA
ATTCCATTGGAGCTAACTCCTTCTGAAAGAACATTAGTTGGTATAACTGGGAGGAAACTA
ATCCAAAAGCTGAAAAGCCATGTCCTCCAAACAAATCTACTTCCCCACTCCAAGAATCTC
TTGCTCCAACTCTTGCCATTGTCGATATGGTCTCGCATGGATATTTGCTTGGTATCGAGG
GCCCTGAACTACACCTCCAAAGCAACCTGCTTCATGGGAGACACTCGATCATATCGAGAG
GCAAGTCAATTGTAAATCCTCTTAGCAACTTTCAACAACGCAACGCAATACTCGAGGATG
TAAAACGACTGAATCTAAGCATTGGCA
■■Homology search results ■■ -
sp_hit_id Q9QSP0
Definition sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat lyssavirus (isolate Bat/AUS/1996)
Align length 52
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919506|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_H03.
         (387 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat lys...    31   1.7  
sp|Q5KGG4|VPS27_CRYNE Vacuolar protein sorting-associated protei...    30   2.9  
sp|Q68XG2|GYRA_RICTY DNA gyrase subunit A OS=Rickettsia typhi GN...    30   4.9  
sp|Q8JTG9|L_ABLVH Large structural protein OS=Australian bat lys...    29   6.5  
sp|P41080|GYRA_RICPR DNA gyrase subunit A OS=Rickettsia prowazek...    29   6.5  
sp|Q5A5S7|ATG27_CANAL Autophagy-related protein 27 OS=Candida al...    29   6.5  
sp|Q5KKT9|TRM6_CRYNE tRNA (adenine-N(1)-)-methyltransferase non-...    29   8.4  
sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protei...    29   8.4  
sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1...    29   8.4  

>sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat
           lyssavirus (isolate Bat/AUS/1996) GN=L PE=3 SV=2
          Length = 2128

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 234 IEGPELHLQSNL-LHGRHSIISRGKSIVNPLSNFQQRNAILEDVKRLNLSIG 386
           + GP     ++L LHG HS  +R +  ++ L+ F Q+++ +E  K LN ++G
Sbjct: 91  VGGPAAQAMTSLWLHGEHSESNRSRKCLSDLTQFYQKSSPIE--KLLNYTLG 140


>sp|Q5KGG4|VPS27_CRYNE Vacuolar protein sorting-associated protein
           27 OS=Cryptococcus neoformans GN=VPS27 PE=3 SV=1
          Length = 750

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 93  ISWYNWEETNPK----AEKPCPPNKSTSPLQESLAPTLAIVDMV 212
           +SW     TNP+    AEK C P     P  E +A  L + DM+
Sbjct: 1   MSWLWGSTTNPQFEELAEKACSPLNLPYPQSEDIATALEVADMI 44


>sp|Q68XG2|GYRA_RICTY DNA gyrase subunit A OS=Rickettsia typhi
           GN=gyrA PE=3 SV=1
          Length = 905

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 204 DMVSHGYLLGIEGPELHLQSNLLHGRHSIISRGKSIVNPLSNFQQRNAILE 356
           D  +   +LGI G    ++S  L GR SII RGK+ +  + N +Q   I E
Sbjct: 217 DFPTGSMILGISG----IRSAYLTGRGSIIMRGKAEIENIGNSRQAIIITE 263


>sp|Q8JTG9|L_ABLVH Large structural protein OS=Australian bat
           lyssavirus (isolate Human/AUS/1998) GN=L PE=3 SV=1
          Length = 2127

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 270 LHGRHSIISRGKSIVNPLSNFQQRNAILEDVKRLNLSIG 386
           LHG HS  +R +  ++ L+ F Q+++ +E  K LN ++G
Sbjct: 103 LHGEHSESNRSRKCLSDLTQFYQKSSPIE--KLLNYTLG 139


>sp|P41080|GYRA_RICPR DNA gyrase subunit A OS=Rickettsia prowazekii
           GN=gyrA PE=3 SV=1
          Length = 905

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 204 DMVSHGYLLGIEGPELHLQSNLLHGRHSIISRGKSIVNPLSNFQQRNAILE 356
           D  +   +LGI G    ++S  L GR SII RGK+ +  + N +Q   I E
Sbjct: 217 DFPTGSMILGISG----IRSAYLTGRGSIIMRGKAEIENVGNSRQAIIITE 263


>sp|Q5A5S7|ATG27_CANAL Autophagy-related protein 27 OS=Candida
           albicans GN=ATG27 PE=3 SV=1
          Length = 252

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 239 LDTKQISMRDHIDNGKSWSKRFLEWGSRFVWRTWLFSFWISFLPV 105
           + +K+   ++  DNG+SW            W TW+F F + FL +
Sbjct: 160 ITSKEDKKKEKHDNGESWG-----------WFTWIFIFLVLFLSI 193


>sp|Q5KKT9|TRM6_CRYNE tRNA (adenine-N(1)-)-methyltransferase
           non-catalytic subunit TRM6 OS=Cryptococcus neoformans
           GN=TRM6 PE=3 SV=1
          Length = 560

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  ISWYNWEETNPKAEKPCPPNKSTSP 167
           I W NW E   + +KP PP ++  P
Sbjct: 361 IKWLNWLEAEEEYQKPAPPVQAEPP 385


>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein
           At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
          Length = 484

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 216 HGYLLGIEGPELH--LQSNLLHGRHSIISRGKSIVNPLSNFQQRNAILEDVKRLNLSI 383
           HG+      PE+H  L  + LHG + +++   SI   LSN    N +   ++  N+ +
Sbjct: 12  HGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLV 69


>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1
            OS=Macaca mulatta GN=MDC1 PE=3 SV=1
          Length = 2173

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 120  NPKAEKPCPPNKSTSPLQESLAPTLAIVDMVSHGYLLGIEGPELHLQSNL--LHGRHSII 293
            N +++K   P    SPL  S+ PT+        G     E PE  L S L   H +  II
Sbjct: 1056 NSQSQKHLAPQPLLSPLSPSIEPTIR-----KTGQDRSQEAPETPLSSELEPFHPKPKII 1110

Query: 294  SRGKSIVNP 320
            +R  S + P
Sbjct: 1111 TRKSSRMTP 1119
tr_hit_id Q4SW78
Definition tr|Q4SW78|Q4SW78_TETNG Chromosome 18 SCAF13682, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 73
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919506|Adiantum capillus-veneris mRNA, clone:
YMU001_000125_H03.
         (387 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4SW78|Q4SW78_TETNG Chromosome 18 SCAF13682, whole genome sho...    35   1.4  
tr|B4RYA9|B4RYA9_ALTMD Proline iminopeptidase OS=Alteromonas mac...    34   3.2  
tr|Q472Q4|Q472Q4_RALEJ Nucleoside:H+ symporter:Major facilitator...    33   7.2  
tr|A1KAL3|A1KAL3_AZOSB Putative uncharacterized protein OS=Azoar...    33   7.2  
tr|Q4SB65|Q4SB65_TETNG Chromosome undetermined SCAF14677, whole ...    33   9.3  

>tr|Q4SW78|Q4SW78_TETNG Chromosome 18 SCAF13682, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00011622001 PE=4 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +3

Query: 135 KPCPPNKSTS--PLQESLAPTLAIVDMVSHGY------LLGIEGPELHLQSNLLHGRHSI 290
           +P PP  ST+  PL  + +P    V ++S G+      L G     LH   NLLHG H  
Sbjct: 135 RPFPPTASTASLPLSSASSPLPPHVPVISLGHSKPPLPLTGTPLTALHPIPNLLHGPHGD 194

Query: 291 ISRGKSIVNPLSN 329
           + RG+    P+++
Sbjct: 195 LRRGQMTCLPVAH 207


>tr|B4RYA9|B4RYA9_ALTMD Proline iminopeptidase OS=Alteromonas
           macleodii (strain DSM 17117 / Deep ecotype)
           GN=MADE_03529 PE=4 SV=1
          Length = 325

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
 Frame = +3

Query: 99  WYNWEETNPKAEKPCPPNKSTSPLQESLAPTLAIVD--------MVSHGYLLGIEGPELH 254
           WY WEE   +   P     STS     L   LA ++         +   Y+L   G   H
Sbjct: 200 WYQWEERLSRLSLPPGVGDSTSNYPMHLVTCLATLECHFLSNKCFLDENYILENIGKISH 259

Query: 255 LQSNLLHGRHSIISR 299
           +   ++HGR+ +I +
Sbjct: 260 IPGTIIHGRYDMICK 274


>tr|Q472Q4|Q472Q4_RALEJ Nucleoside:H+ symporter:Major facilitator
           superfamily MFS_1 OS=Ralstonia eutropha (strain JMP134)
           GN=Reut_A1258 PE=4 SV=1
          Length = 422

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 211 TISTMARVGARDSWSGEVDLFGGHGFSAFGLVSSQLYQLMFFQ 83
           TIST+ R GA D   G + +FG  GF A  L    L+Q +  Q
Sbjct: 129 TISTLRRYGAFDHRYGRIRMFGSVGFIAAVLAGGALFQQLGMQ 171


>tr|A1KAL3|A1KAL3_AZOSB Putative uncharacterized protein OS=Azoarcus
           sp. (strain BH72) GN=azo3253 PE=4 SV=1
          Length = 411

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 179 SCSNSCHCRYGLAWIFAWYRGP*TTP--PKQPASWETLDHIERQVNCKSS*QLSTT 340
           S + + H R GL WI A +R P      P+ PA+WE+   IER+   ++S  + TT
Sbjct: 126 SIAATLHARSGLPWI-ADFRDPMAQDDYPEDPATWESFARIERRAIEQASLSVFTT 180


>tr|Q4SB65|Q4SB65_TETNG Chromosome undetermined SCAF14677, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00021114001 PE=4 SV=1
          Length = 620

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
 Frame = +3

Query: 123 PKAEKPCPPNKSTSPLQESLAPTLAIVDMVSHGYLLGIEGPELHLQSNL----------- 269
           P A   C PN   SPL       L ++D VS+    G E    H QS+            
Sbjct: 339 PSAPAQCSPNSDESPLTPLDVTRLPVMDNVSYSKSGGGE----HHQSSAHHRKEKERERD 394

Query: 270 ----LHGRHSIISRGKSIVNPL-SNF 332
               LH  H I S G+S   PL SNF
Sbjct: 395 QDPDLHSTHPITSSGRSSAPPLPSNF 420