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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921114
Clone id YMU001_000145_G11
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTAAGGCAGAGAAAAGCTTGTTATCAGAGACTAATCAAATGAGAAATATGTTA
GCTCTCTAAAACATCAAAATGACAAGCAACTTAATATACAGCTGGAGGGTCATACTAATA
GCTAATAAATGCCATCAGGACTGGTAAGAACTTGGTCACTGGAGTTGTAGAGGCTCTATA
CATTCCATACAAGGGTATAGATCCACCAAGTCCCACGCGATGATAGGGCTGAGAGTTCAA
CCAGTGAGGAGGACTTGTAAACCCCAGATAAGAAACCACAGACAAACAGTGTGCAAATTC
TGACATGTTTTTGCCTTTACGACTCTTCTCCAACCTGTTCTCCTTCAGGTTCCTCACCAA
TTCCCTGAAGCAATGCCTGAACATCCTCACCCAATTCTTCCAAGCGTGTCCTCAGCCTCT
CGACCTTGCTTTCCTC
■■Homology search results ■■ -
sp_hit_id P08313
Definition sp|P08313|UL47_HHV1F Tegument protein UL47 OS=Human herpesvirus 1 (strain F)
Align length 43
Score (bit) 29.3
E-value 7.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921114|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_G11.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08313|UL47_HHV1F Tegument protein UL47 OS=Human herpesvirus ...    29   7.5  
sp|Q32450|CHLB_ISOEC Light-independent protochlorophyllide reduc...    29   9.8  

>sp|P08313|UL47_HHV1F Tegument protein UL47 OS=Human herpesvirus 1
           (strain F) GN=UL47 PE=3 SV=1
          Length = 664

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 288 CLSVVSYLGFTSPPHWLNSQPYHRVGLGGSIPLYGMYRASTTP 160
           C+++ ++ G + PP W  + P +   L  + PLY    A TTP
Sbjct: 556 CVTLAAFDGDSRPPRWARTPPCYACVLRATQPLY----ARTTP 594


>sp|Q32450|CHLB_ISOEC Light-independent protochlorophyllide
           reductase subunit B (Fragment) OS=Isoetes echinospora
           GN=chlB PE=3 SV=1
          Length = 103

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 252 PPHWLNSQPYHRVGLGGSIPL---YGMYRASTTPV 157
           P  W+N  PY  VGL  +I L   +GM   STTP+
Sbjct: 28  PKAWVNLVPYREVGLMTAIYLEKEFGMPYISTTPM 62
tr_hit_id A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8
Definition tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma factor SigF OS=Microcystis aeruginosa PCC 7806
Align length 84
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921114|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_G11.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma f...    40   0.058
tr|B5W062|B5W062_SPIMA RNA polymerase, sigma 28 subunit, FliA/Wh...    36   0.84 
tr|B0JY76|B0JY76_MICAN RNA polymerase sigma factor OS=Microcysti...    35   1.4  
tr|A0YKT8|A0YKT8_9CYAN Sigma factor SigF OS=Lyngbya sp. PCC 8106...    35   1.9  
tr|B2IZ53|B2IZ53_NOSP7 RNA polymerase, sigma 28 subunit, FliA/Wh...    35   2.4  
tr|Q8YQH5|Q8YQH5_ANASP RNA polymerase sigma factor OS=Anabaena s...    34   4.1  
tr|Q3MC20|Q3MC20_ANAVT RNA polymerase sigma factor OS=Anabaena v...    34   4.1  
tr|Q4QSA9|Q4QSA9_RHOMR Putative NhaD type antiporter OS=Rhodothe...    33   7.1  
tr|B6R038|B6R038_9RHOB Acetolactate synthase, large subunit, bio...    33   9.2  
tr|B4AZQ9|B4AZQ9_9CHRO RNA polymerase, sigma 28 subunit, FliA/Wh...    33   9.2  

>tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma
           factor SigF OS=Microcystis aeruginosa PCC 7806
           GN=IPF_5732 PE=4 SV=1
          Length = 258

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = +1

Query: 40  NQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTKSHA 219
           NQ+R+ +   N+ +     + W      N+CH+++ +L    C G I +I+ + S+K HA
Sbjct: 26  NQLRDQIIRLNLGLVRREAHHW-----VNQCHENYEDLVQVGCMGLIRAIKRFDSSKGHA 80

Query: 220 MIGLRVQPVRRTCKPQIRNHRQTV 291
                +  +R   +  +R+   TV
Sbjct: 81  FSSFAIPYIRGEIQHYLRDKGYTV 104


>tr|B5W062|B5W062_SPIMA RNA polymerase, sigma 28 subunit, FliA/WhiG
           family OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_2154
           PE=4 SV=1
          Length = 255

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = +1

Query: 31  SETNQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 210
           S +N +RN L   NI +    ++ W      N+C + + +L    C G I +I+ +  +K
Sbjct: 23  SPSNSVRNQLVQINIGLVRKEVHHW-----LNQCTESYDDLLQVGCIGLIRAIERFDMSK 77

Query: 211 SHAMIGLRVQPVRRTCKPQIRNHRQTV 291
            HA     +  +R   +  +R+   +V
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRDKSPSV 104


>tr|B0JY76|B0JY76_MICAN RNA polymerase sigma factor OS=Microcystis
           aeruginosa (strain NIES-843) GN=sigF PE=3 SV=1
          Length = 258

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/84 (22%), Positives = 40/84 (47%)
 Frame = +1

Query: 40  NQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTKSHA 219
           N++R+ +   N+ +     + W      N+CH+++ +L      G I +I+ + S+K HA
Sbjct: 26  NKLRDQIMELNLGLVRREAHHW-----VNQCHENYEDLVQVGSMGLIRAIERFDSSKGHA 80

Query: 220 MIGLRVQPVRRTCKPQIRNHRQTV 291
                +  +R   +  +R+   TV
Sbjct: 81  FSSFAIPYIRGEIQHHLRDKSYTV 104


>tr|A0YKT8|A0YKT8_9CYAN Sigma factor SigF OS=Lyngbya sp. PCC 8106
           GN=L8106_09326 PE=4 SV=1
          Length = 259

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = +1

Query: 31  SETNQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 210
           S + ++RN L   NI +    ++ W      N+C +++ +L    C G I +I+ +  +K
Sbjct: 23  SNSKELRNQLVQLNIGLVRKEVHHW-----VNQCTENYDDLLQVGCIGLIRAIERFDLSK 77

Query: 211 SHAMIGLRVQPVRRTCKPQIRN 276
            HA     +  +R   +  +R+
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRD 99


>tr|B2IZ53|B2IZ53_NOSP7 RNA polymerase, sigma 28 subunit, FliA/WhiG
           family OS=Nostoc punctiforme (strain ATCC 29133 / PCC
           73102) GN=Npun_F4811 PE=4 SV=1
          Length = 269

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/87 (24%), Positives = 38/87 (43%)
 Frame = +1

Query: 31  SETNQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 210
           S +  +RN L   N  +     + W      N+CH+ + +L    C G I +I+ +  +K
Sbjct: 34  SRSENVRNKLVKLNFGLVRKEAHYW-----TNQCHETYDDLLQVGCLGLIRAIEKFELSK 88

Query: 211 SHAMIGLRVQPVRRTCKPQIRNHRQTV 291
            HA     +  +R   +  +R+   TV
Sbjct: 89  GHAFSSYALPYIRGEIQHYLRDKGVTV 115


>tr|Q8YQH5|Q8YQH5_ANASP RNA polymerase sigma factor OS=Anabaena sp.
           (strain PCC 7120) GN=all3853 PE=3 SV=1
          Length = 258

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = +1

Query: 31  SETNQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 210
           S +  +RN L   N+ +     + W      N+C +++ +L    C G I +I+ +   K
Sbjct: 23  SRSETVRNQLVKLNLGLVRKEAHYWM-----NQCRENYDDLVQVGCLGLIRAIERFEIAK 77

Query: 211 SHAMIGLRVQPVRRTCKPQIRNHRQTV 291
            HA     +  +R   +  +R+   TV
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRDKGVTV 104


>tr|Q3MC20|Q3MC20_ANAVT RNA polymerase sigma factor OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1844
           PE=3 SV=1
          Length = 258

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = +1

Query: 31  SETNQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 210
           S +  +RN L   N+ +     + W      N+C +++ +L    C G I +I+ +   K
Sbjct: 23  SRSETVRNQLVKLNLGLVRKEAHYWM-----NQCRENYDDLVQVGCLGLIRAIERFEIAK 77

Query: 211 SHAMIGLRVQPVRRTCKPQIRNHRQTV 291
            HA     +  +R   +  +R+   TV
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRDKGVTV 104


>tr|Q4QSA9|Q4QSA9_RHOMR Putative NhaD type antiporter
           OS=Rhodothermus marinus PE=4 SV=1
          Length = 527

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 252 PPHWLNSQPYHRVGLGGSIPLYGMY-RASTTPVTKFLPVLMAFIS 121
           P HW +  P + VGLG  + LY ++   STTPV   +   ++FI+
Sbjct: 101 PHHWHHHYPKYAVGLGLFVSLYYIFGLGSTTPVVHAIEEYLSFIA 145


>tr|B6R038|B6R038_9RHOB Acetolactate synthase, large subunit,
           biosynthetic type OS=Pseudovibrio sp. JE062 GN=ilvB PE=4
           SV=1
          Length = 586

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -2

Query: 381 FRHCFRELVRNLKENRLEKSRKGKNMSEFA-----HCLSVVSYLGFTSPPHWLNSQPYHR 217
           +RH    ++      RL ++ KG+     +     H +    YLGF SP HWL S  +  
Sbjct: 363 YRHSDDVIMPQYALQRLNEAIKGRKDVYISTEVGQHQMWAAQYLGFESPNHWLTSGGFGT 422

Query: 216 VGLG 205
           +G G
Sbjct: 423 MGYG 426


>tr|B4AZQ9|B4AZQ9_9CHRO RNA polymerase, sigma 28 subunit, FliA/WhiG
           family OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_1438
           PE=4 SV=1
          Length = 258

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/87 (20%), Positives = 40/87 (45%)
 Frame = +1

Query: 31  SETNQMRNMLAL*NIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 210
           S + ++RN +   N  +     Y W      ++C++++ +L    C G I +I+ + + K
Sbjct: 23  SPSTELRNQILELNFGLVRREAYHW-----VSQCNENYEDLLQVGCLGLIRAIERFETGK 77

Query: 211 SHAMIGLRVQPVRRTCKPQIRNHRQTV 291
            HA     +  +R   +  +R+   +V
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRDKGYSV 104