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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921554
Clone id YMU001_000151_D05
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGCTGGAGGCAGCTCGAGAGGAGGGAAGGCAGGAAGCTGCAAAGGAGAGTGAAGCAGAG
CTGAATGATCTGCTTGTATGTCTTGGGCAGGAGGAAAGCAAGGTCGAGAGGCTGAGGACA
CGCTTGGAAGAATTGGGTGAGGATGTTCAGGCATTGCTTCAGGGAATTGGTGAGGAACCT
GAAGGAGAACAGGTTGGAGAAGAGTCGTAAAGGCAAAAACATGTCAGAATTTGCACACTG
TTTGTCTGTGGTTTCTTATCTGGGGTTTACAAGTCCTCCTCACTGGTTGAACTCTCAGCC
CTATCATCGCGTGGGACTTGGTGGATCTATACCCTTGTATGGAATGTATAGAGCCTCTAC
AACTCCAGTGACCAAGTTCTTACCAGTCCTGATGGCATTTATTAGCTATTAGTATGACCC
TCCAGCTGTATATTAAGTTGCTTGTCATTTTGATGTTTGAGAGAGCTAACATATTTCTCA
TTTGATTAGTCTCTGATAACAAGCTTTTCTCTGCCTT
■■Homology search results ■■ -
sp_hit_id B0F9L4
Definition sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana
Align length 38
Score (bit) 43.1
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921554|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_D05.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana...    43   8e-04
sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus...    31   3.0  
sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN...    31   3.0  
sp|Q6P444|FA54A_HUMAN Protein FAM54A OS=Homo sapiens GN=FAM54A P...    30   5.2  

>sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana
           GN=GC6 PE=2 SV=2
          Length = 914

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 23/38 (60%), Positives = 24/38 (63%)
 Frame = +1

Query: 49  SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 162
           SE ELNDLLVCLGQEESKV          G DV  LL+
Sbjct: 862 SEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLE 899


>sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus
           GN=Rin1 PE=2 SV=2
          Length = 774

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 163 PEAMPEHPHPILPSVSSASRPCFPPAQDIQADHS 62
           P A+P  P P+LP  SS+     PP Q +Q + S
Sbjct: 258 PPAVPPPPVPVLPGTSSSQTERLPPRQLLQRESS 291


>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus
           GN=Rin1 PE=1 SV=1
          Length = 763

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 163 PEAMPEHPHPILPSVSSASRPCFPPAQDIQADHS 62
           P A+P  P P+LP  SS+     PP Q +Q + S
Sbjct: 247 PPAVPPPPVPVLPGTSSSQTERLPPRQLLQRESS 280


>sp|Q6P444|FA54A_HUMAN Protein FAM54A OS=Homo sapiens GN=FAM54A PE=2
           SV=2
          Length = 385

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 151 PEHPHPILPSVSSASRPCFPPAQ 83
           P  P P+ P  SS   PCFPP Q
Sbjct: 208 PPPPPPLPPQFSSLQPPCFPPVQ 230
tr_hit_id Q2QP84
Definition tr|Q2QP84|Q2QP84_ORYSJ Os12g0538900 protein OS=Oryza sativa subsp. japonica
Align length 38
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921554|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_D05.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QP84|Q2QP84_ORYSJ Os12g0538900 protein OS=Oryza sativa subs...    49   2e-04
tr|B8BMB4|B8BMB4_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A3CI41|A3CI41_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A5CAJ6|A5CAJ6_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|O65753|O65753_CICAR Putative uncharacterized protein (Fragmen...    45   0.002
tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma f...    41   0.041
tr|A9TYU0|A9TYU0_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.041
tr|B5W062|B5W062_SPIMA RNA polymerase, sigma 28 subunit, FliA/Wh...    37   0.59 
tr|B0JY76|B0JY76_MICAN RNA polymerase sigma factor OS=Microcysti...    36   1.0  
tr|A0YKT8|A0YKT8_9CYAN Sigma factor SigF OS=Lyngbya sp. PCC 8106...    36   1.3  
tr|A4RXK2|A4RXK2_OSTLU Predicted protein OS=Ostreococcus lucimar...    36   1.3  
tr|B2IZ53|B2IZ53_NOSP7 RNA polymerase, sigma 28 subunit, FliA/Wh...    35   1.7  
tr|Q8YQH5|Q8YQH5_ANASP RNA polymerase sigma factor OS=Anabaena s...    35   2.9  
tr|Q3MC20|Q3MC20_ANAVT RNA polymerase sigma factor OS=Anabaena v...    35   2.9  
tr|Q019A0|Q019A0_OSTTA Vesicle tethering family protein (ISS) OS...    34   5.0  
tr|B4AZQ9|B4AZQ9_9CHRO RNA polymerase, sigma 28 subunit, FliA/Wh...    33   6.5  
tr|Q4QSA9|Q4QSA9_RHOMR Putative NhaD type antiporter OS=Rhodothe...    33   8.5  
tr|A9SWL2|A9SWL2_PHYPA Predicted protein OS=Physcomitrella paten...    33   8.5  

>tr|Q2QP84|Q2QP84_ORYSJ Os12g0538900 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0538900 PE=2 SV=1
          Length = 929

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 25/38 (65%), Positives = 26/38 (68%)
 Frame = +1

Query: 49  SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 162
           SEAELNDLLVCLGQE+SKV          GEDV  LLQ
Sbjct: 872 SEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQ 909


>tr|B8BMB4|B8BMB4_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38607 PE=4 SV=1
          Length = 1051

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 25/38 (65%), Positives = 26/38 (68%)
 Frame = +1

Query: 49   SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 162
            SEAELNDLLVCLGQE+SKV          GEDV  LLQ
Sbjct: 994  SEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQ 1031


>tr|A3CI41|A3CI41_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034963 PE=4 SV=1
          Length = 829

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 25/38 (65%), Positives = 26/38 (68%)
 Frame = +1

Query: 49  SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 162
           SEAELNDLLVCLGQE+SKV          GEDV  LLQ
Sbjct: 772 SEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQ 809


>tr|A5CAJ6|A5CAJ6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003069 PE=4 SV=1
          Length = 131

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 24/38 (63%), Positives = 26/38 (68%)
 Frame = +1

Query: 49  SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 162
           SEAELNDLLVCLGQE+SKV          GEDV  LL+
Sbjct: 77  SEAELNDLLVCLGQEQSKVEKLSARLLELGEDVDKLLE 114


>tr|O65753|O65753_CICAR Putative uncharacterized protein (Fragment)
           OS=Cicer arietinum PE=2 SV=1
          Length = 129

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +1

Query: 49  SEAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALLQ 162
           SE ELNDLLVCLGQE+SKV          GEDV  LL+
Sbjct: 73  SEGELNDLLVCLGQEQSKVDRLSARLLELGEDVDQLLE 110


>tr|A8YJF0|A8YJF0_MICAE Similar to tr|A3IUE8|A3IUE8_9CHRO Sigma
           factor SigF OS=Microcystis aeruginosa PCC 7806
           GN=IPF_5732 PE=4 SV=1
          Length = 258

 Score = 40.8 bits (94), Expect = 0.041
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = -1

Query: 487 NQMRNMLALSNIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTKSHA 308
           NQ+R+ +   N+ +     + W      N+CH+++ +L    C G I +I+ + S+K HA
Sbjct: 26  NQLRDQIIRLNLGLVRREAHHW-----VNQCHENYEDLVQVGCMGLIRAIKRFDSSKGHA 80

Query: 307 MIGLRVQPVRRTCKPQIRNHRQTV 236
                +  +R   +  +R+   TV
Sbjct: 81  FSSFAIPYIRGEIQHYLRDKGYTV 104


>tr|A9TYU0|A9TYU0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_199606 PE=4 SV=1
          Length = 917

 Score = 40.8 bits (94), Expect = 0.041
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +1

Query: 52  EAELNDLLVCLGQEESKVXXXXXXXXXXGEDVQALL 159
           E ELN+LLVCLGQEE+KV          GEDV  LL
Sbjct: 860 EDELNELLVCLGQEETKVERLSARLRELGEDVDKLL 895


>tr|B5W062|B5W062_SPIMA RNA polymerase, sigma 28 subunit, FliA/WhiG
           family OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_2154
           PE=4 SV=1
          Length = 255

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = -1

Query: 496 SETNQMRNMLALSNIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 317
           S +N +RN L   NI +    ++ W      N+C + + +L    C G I +I+ +  +K
Sbjct: 23  SPSNSVRNQLVQINIGLVRKEVHHW-----LNQCTESYDDLLQVGCIGLIRAIERFDMSK 77

Query: 316 SHAMIGLRVQPVRRTCKPQIRNHRQTV 236
            HA     +  +R   +  +R+   +V
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRDKSPSV 104


>tr|B0JY76|B0JY76_MICAN RNA polymerase sigma factor OS=Microcystis
           aeruginosa (strain NIES-843) GN=sigF PE=3 SV=1
          Length = 258

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 19/84 (22%), Positives = 40/84 (47%)
 Frame = -1

Query: 487 NQMRNMLALSNIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTKSHA 308
           N++R+ +   N+ +     + W      N+CH+++ +L      G I +I+ + S+K HA
Sbjct: 26  NKLRDQIMELNLGLVRREAHHW-----VNQCHENYEDLVQVGSMGLIRAIERFDSSKGHA 80

Query: 307 MIGLRVQPVRRTCKPQIRNHRQTV 236
                +  +R   +  +R+   TV
Sbjct: 81  FSSFAIPYIRGEIQHHLRDKSYTV 104


>tr|A0YKT8|A0YKT8_9CYAN Sigma factor SigF OS=Lyngbya sp. PCC 8106
           GN=L8106_09326 PE=4 SV=1
          Length = 259

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = -1

Query: 496 SETNQMRNMLALSNIKMTSNLIYSWRVILIANKCHQDW*ELGHWSCRGSIHSIQGYRSTK 317
           S + ++RN L   NI +    ++ W      N+C +++ +L    C G I +I+ +  +K
Sbjct: 23  SNSKELRNQLVQLNIGLVRKEVHHW-----VNQCTENYDDLLQVGCIGLIRAIERFDLSK 77

Query: 316 SHAMIGLRVQPVRRTCKPQIRN 251
            HA     +  +R   +  +R+
Sbjct: 78  GHAFSSFAIPYIRGEIQHYLRD 99