NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943499
Clone id YMU02A01NGRL0003_A11
Library
Length 608
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_A11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGTACTCCAGTTAAAAGGCT
CGCTGGAAGGAGCTGGTGAACATCTATGGGGCCTTGTGCTGCTGCTACGTGCTTAAGAGC
GCAGTCTCCTCTACTCCCCTCGAAGGCATCGCGCCGTTCATCATCTCCCCCTTCGTTACC
CACCTTGTCTTGCAGAGTTTCTTCCTCTTACAACAGTGAGCCCATTTGCAGCCACCTTAA
AACCGGCCCTTCCTCGCTGATTCAGACAAAACTACGATCAACTGCTTGCTGGGCATCCCT
TGCCGCTTTTGTTTTAGCAGGCACAAAAGAGGCTTTGGCTCTTGAAGATGGGGCTATGGC
ATCATCAGGATTATCTTTAGCCAATCCAGAAGTCATGTATGCAATTCTTGCCATTGAAGC
TATTGCCCTTATTGGAGCAGCTGTGGGAGGTGCATCATGCCAACGGCAAGGCAAATATCG
TGAGGCCATTGATTATCACAATATGGTTATAGAAATTTCCAAAAGAACAGGTGTGACGTC
AGGAAATGCAGAAGCATTTGGATCAATTGCAGATTGCTATTGTGAACTTGGTGATCTCGA
GGCGGCCC
■■Homology search results ■■ -
sp_hit_id A9JR78
Definition sp|A9JR78|IKBL2_DANRE NF-kappa-B inhibitor-like protein 2 OS=Danio rerio
Align length 48
Score (bit) 37.4
E-value 0.053
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943499|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_A11, 5'
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9JR78|IKBL2_DANRE NF-kappa-B inhibitor-like protein 2 OS=Dan...    37   0.053
sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Hom...    34   0.45 
sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus...    34   0.58 
sp|Q3SP44|F16PA_NITWN Fructose-1,6-bisphosphatase class 1 OS=Nit...    32   1.7  
sp|Q5SW96|ARH_HUMAN Low density lipoprotein receptor adapter pro...    32   2.2  
sp|A2A3L6|TTC24_HUMAN Tetratricopeptide repeat protein 24 OS=Hom...    32   2.2  
sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus GN...    32   2.9  
sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KL...    32   2.9  
sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KL...    32   2.9  
sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus pu...    31   4.9  

>sp|A9JR78|IKBL2_DANRE NF-kappa-B inhibitor-like protein 2 OS=Danio
           rerio GN=nfkbil2 PE=2 SV=1
          Length = 1427

 Score = 37.4 bits (85), Expect = 0.053
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 424 RQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           + G Y+ AI+ H   + +S+      G+A A   I +CY ELG++EAA
Sbjct: 39  KTGDYQAAIEEHRQELALSEILHDVIGSAVANRKIGECYAELGNIEAA 86


>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo
            sapiens GN=TTC28 PE=1 SV=4
          Length = 2481

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 421  QRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
            Q+ G+Y  A+ YH + ++I++ T   +    A+G++   Y  LG  E A
Sbjct: 1008 QQMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERA 1056


>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus
           musculus GN=Ttc28 PE=2 SV=2
          Length = 1691

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 421 QRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           Q+ G+Y  A+ YH + ++I++ T   +    A+G++   Y  LG  E A
Sbjct: 243 QQMGEYDTALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERA 291


>sp|Q3SP44|F16PA_NITWN Fructose-1,6-bisphosphatase class 1
           OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
           GN=fbp PE=3 SV=1
          Length = 345

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 167 EEETLQDKVGNEGGDDERRDAFEGSRGDCALKHVAAAQGPIDVHQLLPASLLTGV 3
           +E TLQ+++  EGG D  R A +G+         A AQ  ID+  L     L G+
Sbjct: 3   QEMTLQERMDGEGGSDPLRQAVKGA-------VAALAQAAIDISDLTCRGALAGI 50


>sp|Q5SW96|ARH_HUMAN Low density lipoprotein receptor adapter
           protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3
          Length = 308

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
 Frame = -3

Query: 377 SMARIAYMTSGLAKDNPDDAIAPSSRAKA----SFVPAKTKAARDAQQAVDRSFV*ISEE 210
           S+ RI+Y T+    D     IA S   ++    +F+  K K A+     V ++F    E 
Sbjct: 112 SIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEF 171

Query: 209 GPVLRWLQMGSLL*EEETLQDKVGNEGGDDERRDAFEGSRGDC--ALKHVAAAQGPIDVH 36
             V +         EE+  +DK   EGGD        G+R DC  +LK + A    +D+ 
Sbjct: 172 WQVSK---------EEKEKRDKASQEGGD------VLGARQDCTPSLKSLVATGNLLDLE 216

Query: 35  QLLPASLLT 9
           +   A L T
Sbjct: 217 ETAKAPLST 225


>sp|A2A3L6|TTC24_HUMAN Tetratricopeptide repeat protein 24 OS=Homo
           sapiens GN=TTC24 PE=2 SV=1
          Length = 582

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 430 GKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           G Y+EA ++H    ++    G       +FGS+A    +LGD +AA
Sbjct: 287 GNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAA 332


>sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus
           GN=Klc1 PE=2 SV=2
          Length = 560

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 418 CQRQGKYREAIDYHNMVIEI-SKRTGVTSGN-AEAFGSIADCYCELGDLEAA 567
           CQ QGKY E   Y+   +EI   + G    N A+   ++A CY + G  + A
Sbjct: 349 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 400


>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1
           PE=2 SV=3
          Length = 560

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 418 CQRQGKYREAIDYHNMVIEI-SKRTGVTSGN-AEAFGSIADCYCELGDLEAA 567
           CQ QGKY E   Y+   +EI   + G    N A+   ++A CY + G  + A
Sbjct: 349 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 400


>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1
           PE=1 SV=2
          Length = 573

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 418 CQRQGKYREAIDYHNMVIEI-SKRTGVTSGN-AEAFGSIADCYCELGDLEAA 567
           CQ QGKY E   Y+   +EI   + G    N A+   ++A CY + G  + A
Sbjct: 349 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 400


>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus
           purpuratus PE=2 SV=1
          Length = 686

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 418 CQRQGKYREAIDYHNMVIEI-SKRTGVTSGN-AEAFGSIADCYCELGDLEAA 567
           CQ QGKY E   Y+   +EI  K+ G    N A+   ++A  Y + G  +AA
Sbjct: 351 CQNQGKYEEVEWYYQRALEIYEKKLGPDDPNVAKTKNNLAAAYLKQGKYKAA 402
tr_hit_id A7P6F5
Definition tr|A7P6F5|A7P6F5_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 51
Score (bit) 79.3
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943499|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_A11, 5'
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6F5|A7P6F5_VITVI Chromosome chr9 scaffold_7, whole genome ...    79   1e-13
tr|A5AXF8|A5AXF8_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|Q9LJH7|Q9LJH7_ARATH Emb|CAB41081.1 OS=Arabidopsis thaliana PE...    75   3e-12
tr|Q940U6|Q940U6_ARATH AT3g14110/MAG2_6 (Putative uncharacterize...    75   3e-12
tr|Q0GKF3|Q0GKF3_9ASPA Chloroplast FLU-like protein OS=Gymnadeni...    75   3e-12
tr|B4FXB9|B4FXB9_MAIZE FLU OS=Zea mays PE=2 SV=1                       73   1e-11
tr|B4FH81|B4FH81_MAIZE Putative uncharacterized protein OS=Zea m...    73   1e-11
tr|Q8LRH2|Q8LRH2_ORYSJ cDNA clone:001-039-H05, full insert seque...    73   1e-11
tr|B8A8X1|B8A8X1_ORYSI Putative uncharacterized protein OS=Oryza...    73   1e-11
tr|A2ZTN9|A2ZTN9_ORYSJ Putative uncharacterized protein OS=Oryza...    73   1e-11
tr|A9NYZ2|A9NYZ2_PICSI Putative uncharacterized protein OS=Picea...    69   1e-10
tr|A9S0M3|A9S0M3_PHYPA Predicted protein OS=Physcomitrella paten...    68   3e-10
tr|B4FE53|B4FE53_MAIZE Putative uncharacterized protein OS=Zea m...    67   9e-10
tr|Q6YY12|Q6YY12_ORYSJ Os02g0586800 protein OS=Oryza sativa subs...    66   1e-09
tr|A2X6K9|A2X6K9_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|Q64FN8|Q64FN8_CHLRE Chloroplast Flu-like protein long form (F...    54   8e-06
tr|Q64FN7|Q64FN7_CHLRE Chloroplast Flu-like protein short form (...    54   8e-06
tr|B0JHN4|B0JHN4_MICAN Tetratricopeptide repeat protein 28 like ...    44   0.008
tr|Q110T9|Q110T9_TRIEI Tetratricopeptide TPR_2 OS=Trichodesmium ...    42   0.024
tr|Q016B5|Q016B5_OSTTA Homology to unknown gene OS=Ostreococcus ...    41   0.053
tr|Q6NMH5|Q6NMH5_ARATH At3g16760 (Putative uncharacterized prote...    40   0.090
tr|B0C198|B0C198_ACAM1 TPR domain protein OS=Acaryochloris marin...    40   0.12 
tr|B0JIJ6|B0JIJ6_MICAN Tetratricopeptide protein OS=Microcystis ...    39   0.26 
tr|B4B0M0|B4B0M0_9CHRO TPR repeat-containing protein OS=Cyanothe...    39   0.26 
tr|B4B0L8|B4B0L8_9CHRO TPR repeat-containing protein OS=Cyanothe...    39   0.26 
tr|A8YB32|A8YB32_MICAE Similar to tr|Q8YUC9|Q8YUC9 OS=Microcysti...    38   0.34 
tr|A9VDF3|A9VDF3_MONBE Predicted protein OS=Monosiga brevicollis...    38   0.45 
tr|B2IYA1|B2IYA1_NOSP7 TPR repeat-containing protein OS=Nostoc p...    37   0.59 
tr|B4VGZ6|B4VGZ6_9CYAN Tetratricopeptide repeat domain protein O...    37   0.59 
tr|B4AZM0|B4AZM0_9CHRO TPR repeat-containing protein OS=Cyanothe...    37   0.59 

>tr|A7P6F5|A7P6F5_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034046001
           PE=4 SV=1
          Length = 341

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKYR+AI YH+ V+EISKR G  SGN EA+G+IADCY ELGDLE A
Sbjct: 277 SLQRQGKYRDAIKYHSTVLEISKREGENSGNTEAYGAIADCYTELGDLERA 327


>tr|A5AXF8|A5AXF8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027349 PE=4 SV=1
          Length = 232

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKYR+AI YH+ V+EISKR G  SGN EA+G+IADCY ELGDLE A
Sbjct: 168 SLQRQGKYRDAIKYHSTVLEISKREGENSGNTEAYGAIADCYTELGDLERA 218


>tr|Q9LJH7|Q9LJH7_ARATH Emb|CAB41081.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 321

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKYREAI YH+MV+ ISKR    SG  EA+G+IADCY ELGDLE A
Sbjct: 257 SLQRQGKYREAIQYHSMVLAISKRESEDSGITEAYGAIADCYTELGDLEKA 307


>tr|Q940U6|Q940U6_ARATH AT3g14110/MAG2_6 (Putative uncharacterized
           protein) OS=Arabidopsis thaliana GN=At3g14110 PE=2 SV=1
          Length = 316

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKYREAI YH+MV+ ISKR    SG  EA+G+IADCY ELGDLE A
Sbjct: 252 SLQRQGKYREAIQYHSMVLAISKRESEDSGITEAYGAIADCYTELGDLEKA 302


>tr|Q0GKF3|Q0GKF3_9ASPA Chloroplast FLU-like protein OS=Gymnadenia
           conopsea PE=2 SV=1
          Length = 333

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 35/51 (68%), Positives = 40/51 (78%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKY+EAI YH+ V+EI+ R G  SG  EA+GSIADCY ELGDLE A
Sbjct: 265 SLQRQGKYKEAIKYHSKVLEIASRAGEVSGATEAYGSIADCYTELGDLEKA 315


>tr|B4FXB9|B4FXB9_MAIZE FLU OS=Zea mays PE=2 SV=1
          Length = 319

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKY+EAI+YH+MV+ ISK TG  +G  EA+G+IADCY ELG+LE A
Sbjct: 255 SLQRQGKYKEAINYHSMVLNISKVTGEDAGVTEAYGAIADCYTELGELEKA 305


>tr|B4FH81|B4FH81_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 229

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKY+EAI+YH+MV+ ISK TG  +G  EA+G+IADCY ELG+LE A
Sbjct: 165 SLQRQGKYKEAINYHSMVLNISKVTGEDAGVTEAYGAIADCYTELGELEKA 215


>tr|Q8LRH2|Q8LRH2_ORYSJ cDNA clone:001-039-H05, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0520B06.17 PE=2 SV=1
          Length = 324

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKY+EAI YH+MV+ ISK TG  +G  EA+G+IADCY ELG+LE A
Sbjct: 260 SLQRQGKYKEAIKYHSMVLNISKLTGEDAGVTEAYGAIADCYTELGELEKA 310


>tr|B8A8X1|B8A8X1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02148 PE=4 SV=1
          Length = 324

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKY+EAI YH+MV+ ISK TG  +G  EA+G+IADCY ELG+LE A
Sbjct: 260 SLQRQGKYKEAIKYHSMVLNISKLTGEDAGVTEAYGAIADCYTELGELEKA 310


>tr|A2ZTN9|A2ZTN9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001911 PE=4 SV=1
          Length = 265

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +1

Query: 415 SCQRQGKYREAIDYHNMVIEISKRTGVTSGNAEAFGSIADCYCELGDLEAA 567
           S QRQGKY+EAI YH+MV+ ISK TG  +G  EA+G+IADCY ELG+LE A
Sbjct: 201 SLQRQGKYKEAIKYHSMVLNISKLTGEDAGVTEAYGAIADCYTELGELEKA 251