NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943504
Clone id YMU02A01NGRL0003_A17
Library
Length 280
Definition Adiantum capillus-veneris mRNA for unknowm protein.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATACTTACATGTTGATCCAAACTTTAACTGGTATTCAGTGGATATTCAGATGGAAAGTAT
CAAAACCCTTCTCCCCCTTGATTTCTTGTGGATATTACCAGGTCATGGCAGGCGTGCCAA
ATACAATAATGTGGAAGAAAAGAACAAAGCCATCAATGACTTGCTTGATAGTGTATATGT
GAGGGTATGATCAGTTATTTAATGTATAAGTACAAATTACTGGAAGACAATGCAAAGATA
CCAATTCTACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q937U7
Definition sp|Q937U7|SYK_BORGA Lysyl-tRNA synthetase OS=Borrelia garinii
Align length 43
Score (bit) 28.9
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943504|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_A17, 5'
         (251 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q937U7|SYK_BORGA Lysyl-tRNA synthetase OS=Borrelia garinii GN...    29   8.3  

>sp|Q937U7|SYK_BORGA Lysyl-tRNA synthetase OS=Borrelia garinii
           GN=lysS PE=3 SV=2
          Length = 521

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +2

Query: 59  IKTLLPLDFLWILPGHGRRAKYNNVE----EKNKAINDLLDSV 175
           IK   P DF ++L     R+K++N+E    +  KAI++LLDS+
Sbjct: 417 IKDFAPEDFKFLL-----RSKFDNIEILKEDNKKAISELLDSL 454
tr_hit_id A9P038
Definition tr|A9P038|A9P038_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 73.2
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943504|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_A17, 5'
         (251 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P038|A9P038_PICSI Putative uncharacterized protein OS=Picea...    73   6e-12
tr|A9RJ08|A9RJ08_PHYPA Predicted protein OS=Physcomitrella paten...    63   6e-09
tr|B8LLU2|B8LLU2_PICSI Putative uncharacterized protein OS=Picea...    57   4e-07
tr|A9P172|A9P172_PICSI Putative uncharacterized protein OS=Picea...    57   4e-07
tr|B6UI84|B6UI84_MAIZE Zn-dependent hydrolases, including glyoxy...    55   2e-06
tr|Q6K9T9|Q6K9T9_ORYSJ Os02g0829500 protein OS=Oryza sativa subs...    50   6e-05
tr|Q6K9T8|Q6K9T8_ORYSJ Metallo-beta-lactamase-like OS=Oryza sati...    50   6e-05
tr|B8ACT9|B8ACT9_ORYSI Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A6N044|A6N044_ORYSI Zn-dependent hydrolase (Fragment) OS=Oryz...    50   6e-05
tr|A3ACZ0|A3ACZ0_ORYSJ Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|Q8RWE1|Q8RWE1_ARATH Putative uncharacterized protein At4g3354...    50   7e-05
tr|O81871|O81871_ARATH Putative uncharacterized protein T16L1.30...    50   7e-05
tr|B8ACT8|B8ACT8_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A3ACZ1|A3ACZ1_ORYSJ cDNA clone:J013045A06, full insert sequen...    49   1e-04
tr|B0CDW4|B0CDW4_ACAM1 Metallo-beta-lactamase superfamily protei...    45   0.002
tr|Q05S55|Q05S55_9SYNE Metallo-beta-lactamase superfamily hydrol...    43   0.007
tr|B1XPF9|B1XPF9_SYNP2 Metallo-beta-lactamase superfamily hydrol...    43   0.009
tr|B7JZY6|B7JZY6_SYNP8 Beta-lactamase domain protein OS=Synechoc...    42   0.012
tr|B4C4X1|B4C4X1_9CHRO Beta-lactamase domain protein OS=Cyanothe...    42   0.012
tr|B4WN84|B4WN84_9SYNE Metallo-beta-lactamase superfamily protei...    41   0.034
tr|A3IKT6|A3IKT6_9CHRO Putative uncharacterized protein OS=Cyano...    40   0.045
tr|Q7VAK0|Q7VAK0_PROMA Metallo-beta-lactamase superfamily hydrol...    39   0.10 
tr|A5GSU8|A5GSU8_SYNR3 Metallo-beta-lactamase superfamily hydrol...    39   0.10 
tr|Q024S0|Q024S0_SOLUE Beta-lactamase domain protein OS=Solibact...    39   0.13 
tr|Q72MS5|Q72MS5_LEPIC Metallo-beta-lactamase superfamily hydrol...    39   0.17 
tr|B4AUQ0|B4AUQ0_9CHRO Beta-lactamase domain protein OS=Cyanothe...    39   0.17 
tr|A0YY75|A0YY75_9CYAN Putative uncharacterized protein OS=Lyngb...    39   0.17 
tr|B2J6Q1|B2J6Q1_NOSP7 Beta-lactamase domain protein OS=Nostoc p...    38   0.22 
tr|A3YXQ9|A3YXQ9_9SYNE Metallo-beta-lactamase superfamily hydrol...    38   0.22 
tr|Q3MFG6|Q3MFG6_ANAVT Beta-lactamase-like OS=Anabaena variabili...    38   0.29 

>tr|A9P038|A9P038_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 352

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 31/51 (60%), Positives = 39/51 (76%)
 Frame = +2

Query: 23  FNWYSVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLLDSV 175
           +NWYSV+ Q+E+I+  L +DFLWILPGHGRR K+ N+ EKN AI  LL  V
Sbjct: 298 YNWYSVEKQVENIRPFLQMDFLWILPGHGRRIKFENINEKNAAIEKLLSGV 348


>tr|A9RJ08|A9RJ08_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_175342 PE=4 SV=1
          Length = 357

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 24/48 (50%), Positives = 39/48 (81%)
 Frame = +2

Query: 23  FNWYSVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           +NWY+V+I +ES++ LLPL+F W+LPGHGRR  ++++EE++  I + L
Sbjct: 301 YNWYNVNILLESLQKLLPLEFTWLLPGHGRRRHFSSLEERDVIIKEFL 348


>tr|B8LLU2|B8LLU2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 346

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +2

Query: 26  NWYSVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLLDS 172
           N YSV  Q+ SI+ LL LDFLWILPGHG+R K+ + +EKN A+   L S
Sbjct: 290 NEYSVTRQVGSIQRLLQLDFLWILPGHGKRLKFKDFKEKNVALERYLAS 338


>tr|A9P172|A9P172_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 328

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +2

Query: 26  NWYSVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLLDS 172
           N YSV  Q+ SI+ LL LDFLWILPGHG+R K+ + +EKN A+   L S
Sbjct: 272 NEYSVTRQVGSIQRLLQLDFLWILPGHGKRLKFKDFKEKNVALERYLAS 320


>tr|B6UI84|B6UI84_MAIZE Zn-dependent hydrolases, including
           glyoxylases OS=Zea mays PE=2 SV=1
          Length = 328

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +2

Query: 35  SVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           SV +Q+ESI+ LL L+F W+LPGHG R KY +V  KN A+  LL
Sbjct: 280 SVSLQLESIRKLLELEFEWLLPGHGYRIKYKDVRAKNVAMESLL 323


>tr|Q6K9T9|Q6K9T9_ORYSJ Os02g0829500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1124_D06.11-1 PE=2 SV=1
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 35  SVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           SV +Q++S++ LL LDF W LPGHG R  Y +V  K+ AI  L+
Sbjct: 278 SVGLQLDSMRKLLKLDFEWFLPGHGYRIHYKDVRAKDSAIESLI 321


>tr|Q6K9T8|Q6K9T8_ORYSJ Metallo-beta-lactamase-like OS=Oryza sativa
           subsp. japonica GN=OJ1124_D06.11-2 PE=4 SV=1
          Length = 211

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 35  SVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           SV +Q++S++ LL LDF W LPGHG R  Y +V  K+ AI  L+
Sbjct: 163 SVGLQLDSMRKLLKLDFEWFLPGHGYRIHYKDVRAKDSAIESLI 206


>tr|B8ACT9|B8ACT9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00069 PE=4 SV=1
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 35  SVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           SV +Q++S++ LL LDF W LPGHG R  Y +V  K+ AI  L+
Sbjct: 278 SVGLQLDSMRKLLKLDFEWFLPGHGYRIHYKDVRAKDSAIESLI 321


>tr|A6N044|A6N044_ORYSI Zn-dependent hydrolase (Fragment) OS=Oryza
           sativa subsp. indica PE=2 SV=1
          Length = 190

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 35  SVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           SV +Q++S++ LL LDF W LPGHG R  Y +V  K+ AI  L+
Sbjct: 142 SVGLQLDSMRKLLKLDFEWFLPGHGYRIHYKDVRAKDSAIESLI 185


>tr|A3ACZ0|A3ACZ0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008662 PE=4 SV=1
          Length = 265

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +2

Query: 35  SVDIQMESIKTLLPLDFLWILPGHGRRAKYNNVEEKNKAINDLL 166
           SV +Q++S++ LL LDF W LPGHG R  Y +V  K+ AI  L+
Sbjct: 217 SVGLQLDSMRKLLKLDFEWFLPGHGYRIHYKDVRAKDSAIESLI 260