NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943508
Clone id YMU02A01NGRL0003_A21
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_A21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TAATACAGACGGAGGTTCGAATCCTCGCAAGGCGTCCGGAACAAAAGTCGTCTTGCATTT
CCGGAATAAGTCTCCCGACCCCTTGCTTTCCACCAAGAGAAAGCAAAAAGAACCCGGGCG
GGAAAGTTTGATTTGGTCAATCTCCTTGCCCCTCCGAACTAAGTGGCGACGAAACCGTTC
TTCGTATCGAGATGCGGGTGGGTCCTGTTGCTTCGGTGTCCCCCGAAGCTAAATCTATCA
AAAGAAAAGGAAATCCTTGGGAAATTTAATATTCCCTAGTACCAATCCGTAAAAATGGAA
TGTAAATCCTGGGATTGTTGACTACTAAGAGTCTCTCTTATCATTCTATGGAGTTTCCAT
AGATAGGTAAGGTCGTAAGTCCCACCTTTTCTATTTTCCCCTCTCCAAACCAAGGGTGGG
GCGGCAAAGAAGATATTGGGTCTCGCCCCAATGCGGTACTCAAAGAATAGTCTTACGGGA
TAGAGAAGAAGGAGGGGTAGGAAGTGGCGGCTTAGACTGATACACGGACGTGATTCGTCT
CTCAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6NRW0
Definition sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis
Align length 61
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943508|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_A21, 5'
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis GN=m...    32   2.6  
sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis ...    31   3.4  
sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog OS=Ara...    30   7.6  
sp|Q6C8W4|PLPL_YARLI Patatin-like phospholipase domain-containin...    30   7.6  
sp|Q60435|UBIM_CRIGR Ubiquitin-like protein FUBI OS=Cricetulus g...    30   9.9  
sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ...    30   9.9  
sp|Q7TQN7|GP135_RAT Probable G-protein coupled receptor 135 OS=R...    30   9.9  
sp|O05528|FLII_CAUCR Flagellum-specific ATP synthase OS=Caulobac...    30   9.9  
sp|A8G5V0|COBQ_PROM2 Cobyric acid synthase OS=Prochlorococcus ma...    30   9.9  
sp|Q6PJG2|CN043_HUMAN Uncharacterized protein C14orf43 OS=Homo s...    30   9.9  

>sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis GN=mtbp
           PE=2 SV=1
          Length = 860

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -1

Query: 204 DPPA-SRYEERFRRHLVRRGKEIDQIKLSRPGSFC--FLLVESKGSGDLFRKCKTTFVPD 34
           +PPA  R  +++R ++ R+ K+I    +   G +C  + L++ KGSG     CK T +  
Sbjct: 335 NPPALQRSSKKWREYMSRKPKDIKVPGVELKGEYCSYYFLIQGKGSG----LCKATLLHS 390

Query: 33  A 31
           A
Sbjct: 391 A 391


>sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis
           GN=mtbp PE=2 SV=2
          Length = 867

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -1

Query: 204 DPPA-SRYEERFRRHLVRRGKEIDQIKLSRPGSFC--FLLVESKGSGDLFRKCKTTFVPD 34
           +PPA  R  +++R ++ R+ K+I    +   G +C  + L++ KGSG     CK T +  
Sbjct: 339 NPPALQRSSKKWREYMSRKPKDIKVPGVELKGEYCSYYFLIQGKGSG----FCKATLLHS 394

Query: 33  A 31
           A
Sbjct: 395 A 395


>sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog
           OS=Arabidopsis thaliana GN=At3g16990 PE=1 SV=2
          Length = 221

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 186 IEMRVGPVASVSPEAKSIKRKGNPWEI*YS-LVPIRKN 296
           +E+ +G +AS++ E +  KR+G+ W++ +S +VP R N
Sbjct: 75  MEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRAN 112


>sp|Q6C8W4|PLPL_YARLI Patatin-like phospholipase domain-containing
           protein YALI0D16379g OS=Yarrowia lipolytica
           GN=YALI0D16379g PE=3 SV=1
          Length = 818

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 407 WRGENRKGGTYDLTYLWKLHRMIRETLSSQQSQDLHSI 294
           WR EN K G YD   + KL +M+R+     Q++DL +I
Sbjct: 292 WR-ENPKFGYYDHVTISKLTKMVRKLRLQDQAEDLSNI 328


>sp|Q60435|UBIM_CRIGR Ubiquitin-like protein FUBI OS=Cricetulus
           griseus GN=FAU PE=3 SV=2
          Length = 74

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 156 ELSGDETVLRIEMRVGPVASVSPEAKSIKRKGNPWE 263
           E++G ETV +I+  V  +  +SPE + +   G+P E
Sbjct: 14  EVTGQETVAQIKAHVASLEGISPEDQVVLLAGSPLE 49


>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and
           nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2
          Length = 732

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 166 PLSSEGQGD*PNQTFPPGFFLLSLGGKQGV----GRLIPEMQDDFCSGR 32
           P    G+G  PNQ  PP F  L +G  QG     G   P +Q  F  GR
Sbjct: 533 PGQQGGRGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGR 581


>sp|Q7TQN7|GP135_RAT Probable G-protein coupled receptor 135
           OS=Rattus norvegicus GN=Gpr135 PE=2 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
 Frame = +2

Query: 17  SNPRKASGTKVV---------LHFRNKSPDPLLSTKRKQKEPGRESLI 133
           SNP   SG +VV         L FR   PDP+++  ++ K   R+S I
Sbjct: 410 SNPASGSGGEVVMWARKNPVVLFFREDPPDPVMAVYKQHKSETRDSSI 457


>sp|O05528|FLII_CAUCR Flagellum-specific ATP synthase OS=Caulobacter
           crescentus GN=fliI PE=3 SV=2
          Length = 444

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 FGQSPCPSELSGDETVLRIEMRVGPVASVSPEAK 233
           FGQ P P+E+ G      + M  GPV  V P A+
Sbjct: 48  FGQKPLPAEVVGFRETRALLMPFGPVEGVGPGAE 81


>sp|A8G5V0|COBQ_PROM2 Cobyric acid synthase OS=Prochlorococcus
           marinus (strain MIT 9215) GN=cobQ PE=3 SV=2
          Length = 509

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 27/84 (32%), Positives = 36/84 (42%)
 Frame = -2

Query: 437 NIFFAAPPLVWRGENRKGGTYDLTYLWKLHRMIRETLSSQQSQDLHSIFTDWY*GILNFP 258
           N  F    L W  EN KGGT   TY   +H +      S + Q ++ I       ILN  
Sbjct: 425 NPIFEDLDLGWFKENNKGGTIAGTY---IHGIFEN--DSWREQYINLIRKSKNLPILNKK 479

Query: 257 RISFSFDRFSFGGHRSNRTHPHLD 186
            IS+   R S   + +N  H HL+
Sbjct: 480 SISYKKKRESIIDNLANEFHKHLN 503


>sp|Q6PJG2|CN043_HUMAN Uncharacterized protein C14orf43 OS=Homo
           sapiens GN=C14orf43 PE=1 SV=2
          Length = 1045

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 11  GGSNPRK---ASGTKVVLHFRNKSPDPLLSTKRKQKEPGRESLIWSISLPLRT 160
           G    RK   AS TK  + F     +P L+TKR +++ G   LI  +S+P+RT
Sbjct: 487 GSEEKRKSVLASTTKCGVEFS----EPSLATKRAREDSGMVPLIIPVSVPVRT 535
tr_hit_id Q7UIE7
Definition tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodopirellula baltica
Align length 41
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943508|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_A21, 5'
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodo...    35   2.0  
tr|A1CQJ5|A1CQJ5_ASPCL Putative uncharacterized protein OS=Asper...    35   2.0  
tr|B6KNM5|B6KNM5_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.3  
tr|B6KD79|B6KD79_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.3  
tr|A7UWX4|A7UWX4_NEUCR Predicted protein OS=Neurospora crassa GN...    34   5.7  
tr|Q851X6|Q851X6_ORYSJ Putative uncharacterized protein OSJNBa00...    33   9.7  
tr|Q10AH3|Q10AH3_ORYSJ Os03g0852300 protein OS=Oryza sativa subs...    33   9.7  
tr|A3APU5|A3APU5_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.7  

>tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB12581 PE=4 SV=1
          Length = 174

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 53  LHFRNKSPDPLLSTKRKQKEPGRESLIWSISLPLRTKWRRN 175
           L  RN+SP+PLL T  + K   R  + W+    +R  WR +
Sbjct: 133 LDARNRSPNPLLKTSWRMKANSRSRITWTPKTKIRDGWRNS 173


>tr|A1CQJ5|A1CQJ5_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_026330 PE=4 SV=1
          Length = 577

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 449 GARPNIFFAAPPLVWRGENRKGGTYDLTYLWKLHRMIRETLSSQQSQDLHSIFTDWY*GI 270
           G+RP + FA  P+  +G N  G  Y L Y W+L   +  + +     D+  I+  W  G+
Sbjct: 168 GSRPQLLFAVLPIADKGANFSGKHYVLCYDWRLRTFLARSFNWLPG-DIRDIWAVWSEGL 226

Query: 269 ----LNFPRI 252
               +  PR+
Sbjct: 227 TVYTITIPRL 236


>tr|B6KNM5|B6KNM5_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_053930 PE=4 SV=1
          Length = 1857

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  CISGISLPTPCFPPRESKKNPGGKV*FGQSPCP 152
           C+ G S PTPC P    +  PGG+   G SPCP
Sbjct: 52  CLEGASEPTPC-PAGTFRDQPGGEALDGCSPCP 83


>tr|B6KD79|B6KD79_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_071360 PE=4 SV=1
          Length = 464

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 39  EQKSSCISGISLPTPCFPPRESKKNPGGKV*FGQSPCPSELSGDETVLRIEMRVGPVASV 218
           E +  C+S  + P+   P   SK   GG    G+  C +  +  ET  R   R  P+AS+
Sbjct: 46  ELQKQCLSSSAAPSFSSPFSSSKPASGGSKRSGRRRCGAGAA--ETAERPSARAAPLASL 103

Query: 219 SPEAKSIKR 245
           SP A ++ R
Sbjct: 104 SPAASALSR 112


>tr|A7UWX4|A7UWX4_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU10326 PE=4 SV=1
          Length = 71

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +3

Query: 102 SKKNPGGKV*FGQSPCPSELSGDETVLRIEMRV 200
           S++  GG+V +  SPCPSEL+   +++R++ R+
Sbjct: 6   SRQREGGRVTYTTSPCPSELTQRHSLVRVKRRI 38


>tr|Q851X6|Q851X6_ORYSJ Putative uncharacterized protein
           OSJNBa0015N08.25 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0015N08.25 PE=4 SV=1
          Length = 289

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 23  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISLPLRTKWRRNRSS 184
           PRK  G K     R     + P P    K+K+  KEP RE      S P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 185 YRDAGGS 205
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|Q10AH3|Q10AH3_ORYSJ Os03g0852300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0852300 PE=2 SV=1
          Length = 303

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 23  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISLPLRTKWRRNRSS 184
           PRK  G K     R     + P P    K+K+  KEP RE      S P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 185 YRDAGGS 205
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|A3APU5|A3APU5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012817 PE=4 SV=1
          Length = 227

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 23  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISLPLRTKWRRNRSS 184
           PRK  G K     R     + P P    K+K+  KEP RE      S P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 185 YRDAGGS 205
            RD GG+
Sbjct: 147 KRDTGGA 153