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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943511
Clone id YMU02A01NGRL0003_B03
Library
Length 347
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_B03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGGAGTGTCTCTCCTTGCCCTTTTCAAGGAAAAGAAGGAGAAACCAAGGTCTTAAGTTT
TGAGAGGATATGTGAAGGTCCAGCAGGACTTGTACCTTATTGATTAGCTTCCTGGGAATG
TTCAGGAGAGATCATCACGAAAATTTTGTTAATCTCATGACATGAGCCAGCTGCTTCTTT
TCGATGCATGCGTTTCCTTCTTTTGAACCATGGGATGGAGAATCATTGTGTCAGTGAAGG
TAAAGATACTTTGTCTGTCCTCATTTCTTTACTGATATAGAAGGGATAGTTTCATTGCTT
AGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46297
Definition sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
Align length 17
Score (bit) 36.2
E-value 0.053
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943511|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_B03, 5'
         (302 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana...    36   0.053
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul...    36   0.053
sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis...    36   0.053
sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis...    36   0.053
sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ...    34   0.20 
sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ...    34   0.20 
sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ...    34   0.20 
sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra...    34   0.20 
sp|Q7N9N4|LIGB_PHOLL DNA ligase B OS=Photorhabdus luminescens su...    33   0.45 
sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra...    33   0.58 
sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu...    33   0.58 
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru...    32   1.3  
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan...    32   1.3  
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel...    32   1.3  
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va...    32   1.3  
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube...    30   2.9  
sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 OS=Sacch...    30   4.9  
sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo...    29   8.4  
sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu...    29   8.4  
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP...    29   8.4  
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G...    29   8.4  
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc...    29   8.4  
sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G...    29   8.4  
sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan...    29   8.4  
sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=...    29   8.4  

>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis
           thaliana GN=RPS23B PE=2 SV=2
          Length = 142

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis
           thaliana GN=RPS23A PE=2 SV=2
          Length = 142

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces
           cerevisiae GN=RPS23A PE=1 SV=1
          Length = 145

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLAL+KEKKEKPRS
Sbjct: 129 GVSLLALWKEKKEKPRS 145


>sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces
           castellii GN=RPS23A PE=3 SV=1
          Length = 145

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLAL+KEKKEKPRS
Sbjct: 129 GVSLLALWKEKKEKPRS 145


>sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces
           bayanus GN=RPS23A PE=3 SV=1
          Length = 145

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLAL+KEKKEKPRS
Sbjct: 129 GVSLLALWKEKKEKPRS 145


>sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabrata
           GN=RPS23 PE=3 SV=1
          Length = 145

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLAL+KEKKEKPRS
Sbjct: 129 GVSLLALWKEKKEKPRS 145


>sp|Q7N9N4|LIGB_PHOLL DNA ligase B OS=Photorhabdus luminescens
           subsp. laumondii GN=ligB PE=3 SV=1
          Length = 580

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -3

Query: 195 KRMHRKEAAGSCHEINKIF-VMISPEHSQEANQ*G----TSPAGPSHILSKLKTLVSPSF 31
           K  HR++  GS    N++  +M+  +HS E  Q G    + P GP+ + SKL+ L    F
Sbjct: 196 KEEHRQQLLGSDGARNRVAGLMMRKDHSSELKQIGLFIWSWPDGPAEMESKLRKLADMGF 255

Query: 30  P 28
           P
Sbjct: 256 P 256


>sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora crassa
           GN=rps-23 PE=3 SV=1
          Length = 145

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GV LLAL+KEKKEKPRS
Sbjct: 129 GVGLLALWKEKKEKPRS 145
tr_hit_id Q8VYX8
Definition tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (Fragment) OS=Pisum sativum
Align length 17
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943511|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_B03, 5'
         (302 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (...    36   0.83 
tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subs...    36   0.83 
tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea may...    36   0.83 
tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment) OS=H...    36   0.83 
tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment) OS=H...    36   0.83 
tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solan...    36   0.83 
tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea...    36   0.83 
tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1     36   0.83 
tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza ...    36   0.83 
tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea...    36   0.83 
tr|B7FHD2|B7FHD2_MEDTR Putative uncharacterized protein OS=Medic...    36   0.83 
tr|B6TI93|B6TI93_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    36   0.83 
tr|B6T6W0|B6T6W0_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    36   0.83 
tr|B4FMD3|B4FMD3_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.83 
tr|B4FBY5|B4FBY5_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    36   0.83 
tr|B3TLT8|B3TLT8_ELAGV 40S ribosomal protein S23 OS=Elaeis guine...    36   0.83 
tr|B3TLT7|B3TLT7_ELAGV 40S ribosomal protein S23 OS=Elaeis guine...    36   0.83 
tr|A9SB19|A9SB19_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|A9PBK6|A9PBK6_POPTR Putative uncharacterized protein OS=Popul...    36   0.83 
tr|A7PSZ0|A7PSZ0_VITVI Chromosome chr8 scaffold_29, whole genome...    36   0.83 
tr|A5BX16|A5BX16_VITVI Putative uncharacterized protein OS=Vitis...    36   0.83 
tr|A2ZZB2|A2ZZB2_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|A2WWQ4|A2WWQ4_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|Q7YY06|Q7YY06_CRYPV Ribosomal protein S23 OS=Cryptosporidium ...    36   0.83 
tr|B6ADS5|B6ADS5_9CRYT 40S ribosomal protein S23, putative OS=Cr...    36   0.83 
tr|A3FPT1|A3FPT1_CRYPV Ribosomal protein S23 (Fragment) OS=Crypt...    36   0.83 
tr|B8C1Z7|B8C1Z7_THAPS RS23, ribosomal protein 23 40S small ribo...    35   1.8  
tr|Q4UB42|Q4UB42_THEAN 40s ribosomal protein s23, putative OS=Th...    35   1.8  
tr|Q4MYU6|Q4MYU6_THEPA 40S ribosomal protein S23, putative OS=Th...    35   1.8  
tr|A7AM80|A7AM80_BABBO 40S ribosomal protein S12P, putative OS=B...    35   1.8  

>tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein
           (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 78

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 62  GVSLLALFKEKKEKPRS 78


>tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subsp.
           japonica GN=P0460C04.38 PE=2 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea mays
           GN=ZMRS072.4 PE=4 SV=1
          Length = 309

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 253 GVSLLALFKEKKEKPRS 269


>tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment)
           OS=Hyacinthus orientalis GN=RPS23 PE=2 SV=1
          Length = 71

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 55  GVSLLALFKEKKEKPRS 71


>tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment)
           OS=Hyacinthus orientalis PE=2 SV=1
          Length = 71

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 55  GVSLLALFKEKKEKPRS 71


>tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea
           mariana PE=4 SV=1
          Length = 82

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 66  GVSLLALFKEKKEKPRS 82


>tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142


>tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza
          sativa subsp. japonica GN=Os01g0834600 PE=4 SV=1
          Length = 46

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3  GVSLLALFKEKKEKPRS 53
          GVSLLALFKEKKEKPRS
Sbjct: 30 GVSLLALFKEKKEKPRS 46


>tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 142

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3   GVSLLALFKEKKEKPRS 53
           GVSLLALFKEKKEKPRS
Sbjct: 126 GVSLLALFKEKKEKPRS 142