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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943529
Clone id YMU02A01NGRL0003_B22
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_B22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAATGGTTACTGGTGGTGAACATTTTATAATATCTTCAAGTGGTCTGTGGGAGGCTAT
ACGAGGACGACAGCCTCCTCATGGATTGGTTTTTGGGATGCTGCATGCTGTCATCGGCTG
GTCCCTAGTGGCACCTTTTTGTGTGGCTGTCCTATATATTGTATTCCTTCCAATTTTTCA
GTATTTGACGGCCAAGTTTGGTGCAGAAAAGCTGGTATTGCAGAGGTATTCGAGCTGTCA
AGACAATTCCTCAGCTTGAACTGGTGGCTCTGTCTAAGCTCTTGCAGTAATGTTGAGATC
TGCCTCGGTAACCTGAGTCGGATCTTCTCAGTCAGTGGGGCATTCATTTACTTGGGCTCT
GGTGACCACTGAGCGTTTGACACTAGGGTGTAAATTTTTGTGTATTATAAATACAATTAT
CTATCTAACTGTTGTCATCGTAGTTTGTACCAGCTTGTATTATCTCCATGATTTATTGAG
GATAATCCTTGATGTGGGTTAGAGCTGAGCTTTGTTTAGCATACA
■■Homology search results ■■ -
sp_hit_id Q1GXM0
Definition sp|Q1GXM0|RSMG_METFK Ribosomal RNA small subunit methyltransferase G OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875)
Align length 52
Score (bit) 31.2
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943529|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_B22, 5'
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1GXM0|RSMG_METFK Ribosomal RNA small subunit methyltransfera...    31   3.1  
sp|Q8VI59|PCX3_MOUSE Pecanex-like protein 3 OS=Mus musculus GN=P...    30   9.1  
sp|Q9H6A9|PCX3_HUMAN Pecanex-like protein 3 OS=Homo sapiens GN=P...    30   9.1  
sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subun...    30   9.1  

>sp|Q1GXM0|RSMG_METFK Ribosomal RNA small subunit methyltransferase
           G OS=Methylobacillus flagellatus (strain KT / ATCC 51484
           / DSM 6875) GN=rsmG PE=3 SV=1
          Length = 205

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 29  IISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQY 184
           +++  GLW A++G+ P   L    L      SL+ P   A  ++VFLP  Q+
Sbjct: 154 LMAEDGLWLAMKGQMPQEELGAVALKPAKIMSLIVPGLDAQRHLVFLPARQF 205


>sp|Q8VI59|PCX3_MOUSE Pecanex-like protein 3 OS=Mus musculus
           GN=Pcnxl3 PE=2 SV=2
          Length = 2028

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 129 WHLFVWLSYILYSFQFFSI*RPSLVQKSWYC 221
           +HL+VW+  +++ F  + +  PSL+    YC
Sbjct: 34  FHLYVWIFLLIFPFLLYMVLPPSLMVAGVYC 64


>sp|Q9H6A9|PCX3_HUMAN Pecanex-like protein 3 OS=Homo sapiens
           GN=PCNXL3 PE=1 SV=2
          Length = 2034

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 129 WHLFVWLSYILYSFQFFSI*RPSLVQKSWYC 221
           +HL+VW+  +++ F  + +  PSL+    YC
Sbjct: 34  FHLYVWIFLLIFPFLLYMVLPPSLMVAGVYC 64


>sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit
           delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2
          Length = 523

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 25/99 (25%), Positives = 46/99 (46%)
 Frame = -2

Query: 374 AQWSPEPK*MNAPLTEKIRLRLPRQISTLLQELRQSHQFKLRNCLDSSNTSAIPAFLHQT 195
           A+  P P  +   +T++ +L+L ++      + +Q  + K     +    SA+ A   Q 
Sbjct: 18  AELPPGPGAVGREMTKEEKLQLRKE------KKQQKKKRKEEKGAEPETGSAVSAAQCQV 71

Query: 194 WPSNTEKLEGIQYIGQPHKKVPLGTSR*QHAASQKPIHE 78
            P+      GIQ +G P +KVP G S+ +  A ++   E
Sbjct: 72  GPTRELPESGIQ-LGTPREKVPAGRSKAELRAERRAKQE 109
tr_hit_id B8AWW0
Definition tr|B8AWW0|B8AWW0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 67
Score (bit) 58.5
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943529|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_B22, 5'
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AWW0|B8AWW0_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|B7F978|B7F978_ORYSJ cDNA, clone: J075115L08, full insert sequ...    57   4e-07
tr|Q9C803|Q9C803_ARATH Putative uncharacterized protein F10C21.2...    55   2e-06
tr|A7Q7U9|A7Q7U9_VITVI Chromosome chr18 scaffold_61, whole genom...    55   2e-06
tr|A3AZ41|A3AZ41_ORYSJ Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|Q9SN29|Q9SN29_ARATH Putative uncharacterized protein F28M11.6...    51   4e-05
tr|Q8RXW2|Q8RXW2_ARATH Putative uncharacterized protein At4g1014...    51   4e-05
tr|B6TYL5|B6TYL5_MAIZE Cytoplasmic membrane protein OS=Zea mays ...    49   2e-04
tr|B4FCB6|B4FCB6_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|B7FH78|B7FH78_MEDTR Putative uncharacterized protein OS=Medic...    47   8e-04
tr|A9SCG1|A9SCG1_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9SYE3|A9SYE3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.024
tr|Q0DLE8|Q0DLE8_ORYSJ Os05g0105500 protein OS=Oryza sativa subs...    41   0.041
tr|Q8TMY8|Q8TMY8_METAC Putative uncharacterized protein OS=Metha...    35   3.0  
tr|B2BF80|B2BF80_STRPU Gonadotropin-releasing hormone receptor 1...    34   3.9  
tr|A6Q2J7|A6Q2J7_NITSB Phosphatidylglycerophosphatase A OS=Nitra...    33   8.6  
tr|B5XCK0|B5XCK0_SALSA Microfibril-associated glycoprotein 4 OS=...    33   8.8  
tr|A2F4M4|A2F4M4_TRIVA Putative uncharacterized protein OS=Trich...    33   8.8  

>tr|B8AWW0|B8AWW0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18117 PE=4 SV=1
          Length = 188

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 25/67 (37%), Positives = 43/67 (64%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E++TG  HF ++S    + I G Q    ++  ++HA++GW + APF +A LY+VF+P F+
Sbjct: 96  EVITGSGHFPLTSDAFKKVITG-QASKDVMLSIVHAMLGWLIAAPFALAALYMVFIPCFK 154

Query: 182 YLTAKFG 202
            +  +FG
Sbjct: 155 LMVDRFG 161


>tr|B7F978|B7F978_ORYSJ cDNA, clone: J075115L08, full insert
           sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 174

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 25/67 (37%), Positives = 42/67 (62%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E++TG  HF ++S    + I G Q    ++  ++HA++GW + APF +A LY+VF P F+
Sbjct: 96  EVITGSGHFPLTSDAFKKVITG-QASKDVMLSIVHAMLGWLIAAPFALAALYMVFTPCFK 154

Query: 182 YLTAKFG 202
            +  +FG
Sbjct: 155 LMVDRFG 161


>tr|Q9C803|Q9C803_ARATH Putative uncharacterized protein F10C21.22
           (Putative uncharacterized protein At1g33490/F10C21_22)
           OS=Arabidopsis thaliana GN=At1g33490/F10C21_22 PE=2 SV=1
          Length = 175

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 26/68 (38%), Positives = 40/68 (58%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E +TGG HF ++S  L +   G Q    +   + +A++GW + APF +  LYI+FLP F+
Sbjct: 95  EKITGGPHFPLTSDALKKVFTG-QASRDVFLSIGNALLGWLIAAPFVIVALYIMFLPCFK 153

Query: 182 YLTAKFGA 205
            L  KF +
Sbjct: 154 ILVRKFSS 161


>tr|A7Q7U9|A7Q7U9_VITVI Chromosome chr18 scaffold_61, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032005001
           PE=4 SV=1
          Length = 185

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 24/66 (36%), Positives = 42/66 (63%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E+++GG HF ++S  + + + G      L+  ++HA++GW + APF + +LYI+FLP  +
Sbjct: 97  EVISGGPHFPLTSDAMKKVLTGHASREVLL-SIVHALLGWLVAAPFILVILYIIFLPCCK 155

Query: 182 YLTAKF 199
            L  KF
Sbjct: 156 LLVRKF 161


>tr|A3AZ41|A3AZ41_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016063 PE=4 SV=1
          Length = 214

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 39/62 (62%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E++TG  HF ++S    + I G Q    ++  ++HA++GW + APF +A LY+VF P F+
Sbjct: 96  EVITGSGHFPLTSDAFKKVITG-QASKDVMLSIVHAMLGWLIAAPFALAALYMVFTPCFK 154

Query: 182 YL 187
            +
Sbjct: 155 LM 156


>tr|Q9SN29|Q9SN29_ARATH Putative uncharacterized protein F28M11.60
           (Putative uncharacterized protein) (Putative
           uncharacterized protein AT4g10140) OS=Arabidopsis
           thaliana GN=AT4g10140 PE=2 SV=1
          Length = 183

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E VTGG HF ++S  L +   G Q    +   + +A++GW +  PF    LY+V LP F 
Sbjct: 95  EKVTGGPHFPLTSDALKKVFTG-QASQEVFLSIGNALLGWLVATPFFFITLYVVLLPCFT 153

Query: 182 YLTAKFG 202
            L  KFG
Sbjct: 154 ILVRKFG 160


>tr|Q8RXW2|Q8RXW2_ARATH Putative uncharacterized protein At4g10140
           (Fragment) OS=Arabidopsis thaliana GN=At4g10140 PE=2
           SV=1
          Length = 143

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E VTGG HF ++S  L +   G Q    +   + +A++GW +  PF    LY+V LP F 
Sbjct: 55  EKVTGGPHFPLTSDALKKVFTG-QASQEVFLSIGNALLGWLVATPFFFITLYVVLLPCFT 113

Query: 182 YLTAKFG 202
            L  KFG
Sbjct: 114 ILVRKFG 120


>tr|B6TYL5|B6TYL5_MAIZE Cytoplasmic membrane protein OS=Zea mays
           PE=4 SV=1
          Length = 112

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E VTG  HF +++  L   + G      L+  ++HA++GW + AP  + VLY V  P F+
Sbjct: 34  EAVTGSGHFPLTADALKNVLTGHASKDVLM-SIVHAMLGWLIAAPIVLVVLYAVSFPCFK 92

Query: 182 YLTAKFG 202
            L  +FG
Sbjct: 93  VLVNRFG 99


>tr|B4FCB6|B4FCB6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 175

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E VTG  HF +++  L   + G      L+  ++HA++GW + AP  + VLY V  P F+
Sbjct: 97  EAVTGSGHFPLTADALKNVLTGHASKDVLM-SIVHAMLGWLIAAPIVLVVLYAVSFPCFK 155

Query: 182 YLTAKFG 202
            L  +FG
Sbjct: 156 VLVNRFG 162


>tr|B7FH78|B7FH78_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 178

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%)
 Frame = +2

Query: 2   EMVTGGEHFIISSSGLWEAIRGRQPPHGLVFGMLHAVIGWSLVAPFCVAVLYIVFLPIFQ 181
           E ++G  HF ++S  L + I G Q    L+  + +A++GW   +PF +A LY+  +P F+
Sbjct: 90  EFISGSPHFSLTSDALKKVITG-QASTELLLSIANALLGWLAASPFILASLYLTLIPCFK 148

Query: 182 YLTAKFGA 205
            L  K  +
Sbjct: 149 LLVNKLNS 156