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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943542
Clone id YMU02A01NGRL0003_C15
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_C15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGGACAGAATCGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGCTGCAATGGTAAC
TGTGGGTGCGGCGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTGCGGCCGAACTGAC
AGCCTTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCC
AGCTATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCT
ACTTCTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATA
ACACCAAAAATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAACATCCATGG
ATCGCTTGTACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAATGATAATGATAA
TGGCTTAAGCCAAGCCATAAAATGCAACACCTTTAGCTTCAAAAAATGGTAAGAGACATG
GTCCAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 34.3
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943542|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_C15, 5'
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    34   0.30 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.89 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    32   1.5  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    32   1.5  
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   7.5  
sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol t...    29   9.8  
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   9.8  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -3

Query: 266 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 87
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 86  H*QFAPHPQLPLQHD 42
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 266 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 87
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 86  H 84
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 266 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 87
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 86  H*QFAPHPQLPLQHD 42
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 266 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 87
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 86  H*QFAPHPQLPLQHD 42
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 239  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-LQPLAH*QFAPHP 63
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 62   QLP 54
              P
Sbjct: 1033 AAP 1035


>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol
           transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1
          Length = 1349

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 202 NLEPFHSWGRRRQWH*EREAPPSTAQGCQFGRTPCSRWRIDSLRR 68
           N EP    G ++QW    ++  S+ +G    R   S WR+ S+ R
Sbjct: 291 NGEPLVGRGLKKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIAR 335


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
           populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
           GN=glmM PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 159 CHCLR-LPQL*KGSRFRSGEHL 221
           CHC   LPQ+ K  RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 22
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943542|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_C15, 5'
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.13 
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   3.1  
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   9.2  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = -3

Query: 107 HPLQPLAH*QFAPHPQLPLQHD 42
           HP QPL H Q  PHPQLP QHD
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHD 241


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +3

Query: 60  LWVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGE 215
           L +RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+
Sbjct: 44  LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 216 HLWVSW 233
             W  W
Sbjct: 104 LTWRYW 109


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 266 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 87
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 86  H 84
           H
Sbjct: 201 H 201