DK943558
Clone id YMU02A01NGRL0003_D11
Library
Length 141
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_D11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ACACCAAGGGGATAAGCACCAAGTCCCTATCTACAGGTGGAAAATCTATTGATTGGACCC
CCGAAGCTGAGTCGGAACTAAAGAGAATCCCTGGTTTTGTGAGGGGAAAAGTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q85FN8
Definition sp|Q85FN8|CHLB_ADICA Light-independent protochlorophyllide reductase subunit B OS=Adiantum capillus-veneris
Align length 34
Score (bit) 71.6
E-value 1.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943558|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_D11, 5'
(106 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q85FN8|CHLB_ADICA Light-independent protochlorophyllide reduc... 72 1e-12
sp|P56302|CHLB_CHLVU Light-independent protochlorophyllide reduc... 41 0.002
sp|Q6VQA8|CHLB_CHLPR Light-independent protochlorophyllide reduc... 41 0.002
sp|Q32RS2|CHLB_STAPU Light-independent protochlorophyllide reduc... 40 0.003
sp|Q9MUR9|CHLB_MESVI Light-independent protochlorophyllide reduc... 40 0.004
sp|Q06SE5|CHLB_STIHE Light-independent protochlorophyllide reduc... 40 0.005
sp|Q19V92|CHLB_CHLAT Light-independent protochlorophyllide reduc... 40 0.005
sp|Q5MZS4|CHLB_SYNP6 Light-independent protochlorophyllide reduc... 39 0.006
sp|Q8GJN0|CHLB_SYNE7 Light-independent protochlorophyllide reduc... 39 0.006
sp|A2T312|CHLB_ANGEV Light-independent protochlorophyllide reduc... 39 0.006
sp|Q8MA01|CHLB_CHAGL Light-independent protochlorophyllide reduc... 38 0.014
sp|A6YGA3|CHLB_LEPTE Light-independent protochlorophyllide reduc... 37 0.031
sp|Q1ACL5|CHLB_CHAVU Light-independent protochlorophyllide reduc... 37 0.031
sp|A1WXI8|BCHB_HALHL Light-independent protochlorophyllide reduc... 37 0.031
sp|Q7VD38|CHLB_PROMA Light-independent protochlorophyllide reduc... 37 0.041
sp|Q85AC2|CHLB_ANTFO Light-independent protochlorophyllide reduc... 37 0.041
sp|P26238|CHLB_MARPO Light-independent protochlorophyllide reduc... 36 0.053
sp|A6H5E7|CHLB_CYCTA Light-independent protochlorophyllide reduc... 36 0.053
sp|Q2JVX9|CHLB_SYNJA Light-independent protochlorophyllide reduc... 35 0.091
sp|Q00864|CHLB_PINTH Light-independent protochlorophyllide reduc... 35 0.091
sp|Q95666|CHLB_PINST Light-independent protochlorophyllide reduc... 35 0.091
sp|Q85X76|CHLB_PINKO Light-independent protochlorophyllide reduc... 35 0.091
sp|Q6YXN5|CHLB_PHYPA Light-independent protochlorophyllide reduc... 35 0.091
sp|Q2JJM9|CHLB_SYNJB Light-independent protochlorophyllide reduc... 35 0.12
sp|Q8YRK5|CHLB_ANASP Light-independent protochlorophyllide reduc... 35 0.12
sp|Q32RP9|CHLB_ZYGCR Light-independent protochlorophyllide reduc... 35 0.16
sp|Q1XDK8|CHLB_PORYE Light-independent protochlorophyllide reduc... 35 0.16
sp|P51278|CHLB_PORPU Light-independent protochlorophyllide reduc... 35 0.16
sp|B0JGE2|CHLB_MICAN Light-independent protochlorophyllide reduc... 35 0.16
sp|P95463|CHLB_PLEBO Light-independent protochlorophyllide reduc... 33 0.35

>sp|Q85FN8|CHLB_ADICA Light-independent protochlorophyllide
reductase subunit B OS=Adiantum capillus-veneris GN=chlB
PE=2 SV=2
Length = 518

Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR
Sbjct: 448 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 481


>sp|P56302|CHLB_CHLVU Light-independent protochlorophyllide
reductase subunit B OS=Chlorella vulgaris GN=chlB PE=3
SV=1
Length = 510

Score = 41.2 bits (95), Expect = 0.002
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKSLST + W PEA +EL+RIPGFVR
Sbjct: 445 TKEVITKSLSTDS-DLAWAPEALTELQRIPGFVR 477


>sp|Q6VQA8|CHLB_CHLPR Light-independent protochlorophyllide
reductase subunit B OS=Chlorella protothecoides GN=chlB
PE=3 SV=1
Length = 510

Score = 41.2 bits (95), Expect = 0.002
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKSLST + W PEA +EL+RIPGFVR
Sbjct: 445 TKEVITKSLSTDS-DLAWAPEALTELQRIPGFVR 477


>sp|Q32RS2|CHLB_STAPU Light-independent protochlorophyllide
reductase subunit B OS=Staurastrum punctulatum GN=chlB
PE=3 SV=1
Length = 513

Score = 40.4 bits (93), Expect = 0.003
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKSLST + W PE+++EL +IPGFVR
Sbjct: 448 TKEVITKSLSTDS-DLTWDPESQAELSKIPGFVR 480


>sp|Q9MUR9|CHLB_MESVI Light-independent protochlorophyllide
reductase subunit B OS=Mesostigma viride GN=chlB PE=3
SV=1
Length = 509

Score = 40.0 bits (92), Expect = 0.004
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TK LST + + WT E+E+EL++IPGFVR
Sbjct: 444 TKEVITKGLSTDSE-LRWTSESENELRKIPGFVR 476


>sp|Q06SE5|CHLB_STIHE Light-independent protochlorophyllide
reductase subunit B OS=Stigeoclonium helveticum GN=chlB
PE=3 SV=1
Length = 510

Score = 39.7 bits (91), Expect = 0.005
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
+K + TKSLST + ++WT EA SEL +IPGFVR
Sbjct: 445 SKEVITKSLSTDSE-LNWTIEATSELNKIPGFVR 477


>sp|Q19V92|CHLB_CHLAT Light-independent protochlorophyllide
reductase subunit B OS=Chlorokybus atmophyticus GN=chlB
PE=3 SV=2
Length = 510

Score = 39.7 bits (91), Expect = 0.005
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKSLST + + WT +A++EL +IPGFVR
Sbjct: 445 TKEVITKSLSTE-EGLTWTSDAQAELSKIPGFVR 477


>sp|Q5MZS4|CHLB_SYNP6 Light-independent protochlorophyllide
reductase subunit B OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=chlB PE=3 SV=1
Length = 508

Score = 39.3 bits (90), Expect = 0.006
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TK++S G +DW P+ +EL RIPGFVR
Sbjct: 443 TKEVLTKTVSAGS-DLDWKPDGLTELNRIPGFVR 475


>sp|Q8GJN0|CHLB_SYNE7 Light-independent protochlorophyllide
reductase subunit B OS=Synechococcus elongatus (strain
PCC 7942) GN=chlB PE=3 SV=2
Length = 508

Score = 39.3 bits (90), Expect = 0.006
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TK++S G +DW P+ +EL RIPGFVR
Sbjct: 443 TKEVLTKTVSAGS-DLDWKPDGLTELNRIPGFVR 475


>sp|A2T312|CHLB_ANGEV Light-independent protochlorophyllide
reductase subunit B OS=Angiopteris evecta GN=chlB PE=3
SV=1
Length = 510

Score = 39.3 bits (90), Expect = 0.006
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKSLST + W PE++ EL +IPGFVR
Sbjct: 445 TKEVITKSLSTE-TDLTWNPESQRELNKIPGFVR 477


tr_hit_id B0YPM9
Definition tr|B0YPM9|B0YPM9_ANEMR Protochlorophyllide reductase ChlB subunit OS=Aneura mirabilis
Align length 34
Score (bit) 38.5
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943558|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_D11, 5'
(106 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0YPM9|B0YPM9_ANEMR Protochlorophyllide reductase ChlB subuni... 39 0.17
tr|B4VIW4|B4VIW4_9CYAN Light-independent protochlorophyllide red... 38 0.29
tr|Q698K4|Q698K4_LARDC Light independent protochlorophyllide oxi... 37 0.50
tr|Q2L601|Q2L601_9CONI Light-independent protochlorophyllide oxi... 37 0.50
tr|B7KC04|B7KC04_9CHRO Light-independent protochlorophyllide red... 36 0.86
tr|B4B0Y3|B4B0Y3_9CHRO Light-independent protochlorophyllide red... 36 0.86
tr|Q8KYZ3|Q8KYZ3_9PROT Light-independent protochlorophyllide red... 36 1.1
tr|B7ZIM6|B7ZIM6_KETDA Photochlorophyllide reductase subunit B O... 36 1.1
tr|B1X0L5|B1X0L5_CYAA5 Light-independent protochlorophyllide red... 35 1.9
tr|Q4BWJ2|Q4BWJ2_CROWT Light-independent protochlorophyllide red... 35 1.9
tr|B7JV38|B7JV38_SYNP8 Light-independent protochlorophyllide red... 35 1.9
tr|B4C3V4|B4C3V4_9CHRO Light-independent protochlorophyllide red... 35 1.9
tr|A3IPD0|A3IPD0_9CHRO Light-independent protochlorophyllide red... 35 1.9
tr|Q2JTT3|Q2JTT3_SYNJA Light-independent protochlorophyllide red... 35 2.5
tr|B4VK40|B4VK40_9CYAN Proto-chlorophyllide reductase 57 kD subu... 35 2.5
tr|B1XP49|B1XP49_SYNP2 Light-independent protochlorophyllide red... 34 4.3
tr|B5W6E6|B5W6E6_SPIMA Light-independent protochlorophyllide red... 34 4.3
tr|B7T1R5|B7T1R5_VAULI ChlB subunit of protochlorophyllide reduc... 34 4.3
tr|B2J0C5|B2J0C5_NOSP7 Light-independent protochlorophyllide red... 33 5.6
tr|A8YD01|A8YD01_MICAE ChlB protein OS=Microcystis aeruginosa PC... 33 5.6
tr|B2X278|B2X278_CHLMO Protochlorophyllide reductase ChlB subuni... 33 5.6
tr|A3YZ48|A3YZ48_9SYNE Light-independent protochlorophyllide red... 33 9.5
tr|A0ZCE6|A0ZCE6_NODSP Light-independent protochlorophyllide red... 33 9.5
tr|Q2L604|Q2L604_CUNLA Light-independent protochlorophyllide oxi... 33 9.5

>tr|B0YPM9|B0YPM9_ANEMR Protochlorophyllide reductase ChlB subunit
OS=Aneura mirabilis GN=chlB PE=4 SV=1
Length = 513

Score = 38.5 bits (88), Expect = 0.17
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKSLST + W E++SEL +IPGFVR
Sbjct: 448 TKEVITKSLSTD-MDLTWNSESQSELSKIPGFVR 480


>tr|B4VIW4|B4VIW4_9CYAN Light-independent protochlorophyllide
reductase, B subunit OS=Microcoleus chthonoplastes PCC
7420 GN=MC7420_7804 PE=4 SV=1
Length = 508

Score = 37.7 bits (86), Expect = 0.29
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TK +S G ++W EA++EL ++PGFVR
Sbjct: 443 TKEVITKGISAGS-DLNWNKEAQAELNKVPGFVR 475


>tr|Q698K4|Q698K4_LARDC Light independent protochlorophyllide
oxidoreductase ChlB subunit (Fragment) OS=Larix decidua
GN=chlB PE=4 SV=1
Length = 482

Score = 37.0 bits (84), Expect = 0.50
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK I TKSLST S+ W PE+ EL +IP FVR
Sbjct: 449 TKEIMTKSLSTD-MSLIWNPESRLELNKIPRFVR 481


>tr|Q2L601|Q2L601_9CONI Light-independent protochlorophyllide
oxidoreductase subunitB (Fragment) OS=Larix kaempferi
GN=chlB PE=4 SV=1
Length = 499

Score = 37.0 bits (84), Expect = 0.50
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK I TKSLST S+ W PE+ EL +IP FVR
Sbjct: 449 TKEIMTKSLSTD-MSLIWNPESRLELNKIPRFVR 481


>tr|B7KC04|B7KC04_9CHRO Light-independent protochlorophyllide
reductase, B subunit OS=Cyanothece sp. PCC 7424
GN=PCC7424_0359 PE=4 SV=1
Length = 508

Score = 36.2 bits (82), Expect = 0.86
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKS+S ++W EA++EL ++PGFVR
Sbjct: 443 TKEVITKSVSADS-DLNWNKEAQTELNKVPGFVR 475


>tr|B4B0Y3|B4B0Y3_9CHRO Light-independent protochlorophyllide
reductase, B subunit OS=Cyanothece sp. PCC 7822
GN=Cyan7822DRAFT_2596 PE=4 SV=1
Length = 508

Score = 36.2 bits (82), Expect = 0.86
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TKS+S ++W EA++EL ++PGFVR
Sbjct: 443 TKEVITKSVSADS-DLNWNKEAQAELNKVPGFVR 475


>tr|Q8KYZ3|Q8KYZ3_9PROT Light-independent protochlorophyllide
reductase, B subunit OS=uncultured proteobacterium
GN=bchB PE=4 SV=1
Length = 514

Score = 35.8 bits (81), Expect = 1.1
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3

Query: 24 SLSTGGKSIDWTPEAESELKRIPGFVR 104
+LSTGG W EAE ELK+IP FVR
Sbjct: 455 ALSTGGDVAIWLAEAEKELKKIPFFVR 481


>tr|B7ZIM6|B7ZIM6_KETDA Photochlorophyllide reductase subunit B
OS=Keteleeria davidiana GN=chlB PE=4 SV=1
Length = 514

Score = 35.8 bits (81), Expect = 1.1
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +3

Query: 6 KGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
K I TKSLST S+ W PE+ EL RIP FVR
Sbjct: 450 KEIMTKSLSTD-MSLIWDPESRLELNRIPRFVR 481


>tr|B1X0L5|B1X0L5_CYAA5 Light-independent protochlorophyllide
reductase, B subunit OS=Cyanothece (strain ATCC 51142)
GN=chlB PE=4 SV=1
Length = 508

Score = 35.0 bits (79), Expect = 1.9
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TK +S ++W EA++EL ++PGFVR
Sbjct: 443 TKEVITKGISADS-DLNWNKEAQAELNKVPGFVR 475


>tr|Q4BWJ2|Q4BWJ2_CROWT Light-independent protochlorophyllide
reductase, B subunit OS=Crocosphaera watsonii
GN=CwatDRAFT_0967 PE=4 SV=1
Length = 508

Score = 35.0 bits (79), Expect = 1.9
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3

Query: 3 TKGISTKSLSTGGKSIDWTPEAESELKRIPGFVR 104
TK + TK +S ++W EA++EL ++PGFVR
Sbjct: 443 TKEVITKGISADS-DLNWNKEAQTELNKVPGFVR 475