DK943575
Clone id YMU02A01NGRL0003_E06
Library
Length 262
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_E06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTGGTCACGGAGGTCATCACTAGATCCAGCCTCTTCTCCTACCCTCACTCTATACATATC
ATGAGTACGTGCTCGCTTTGAGCGCTGAGCTCCCCTTCCTTCCTGTTTGTAAGTATTCGA
ATGTTCGAAAGGTGAATAAAGTAGGCTAATATGTTGTAAGTTGCCTGTTTTGCTTATCTT
CGTCATCTTACCTAATGTAATGTGGCCTTTAAGTCTATAAAAGGTTTATTACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P19524
Definition sp|P19524|MYO2_YEAST Myosin-2 OS=Saccharomyces cerevisiae
Align length 35
Score (bit) 29.3
E-value 6.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943575|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E06, 5'
(232 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P19524|MYO2_YEAST Myosin-2 OS=Saccharomyces cerevisiae GN=MYO... 29 6.5
sp|Q875X3|MYO2A_SACCA Myosin-2A OS=Saccharomyces castellii GN=MY... 29 8.5

>sp|P19524|MYO2_YEAST Myosin-2 OS=Saccharomyces cerevisiae GN=MYO2
PE=1 SV=1
Length = 1574

Score = 29.3 bits (64), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3

Query: 158 YNILAYFIHLSNIRILTNRKEGELSAQSEHVLMIC 54
+ ILA +H+ NI I R + LSA ++ + C
Sbjct: 335 FKILAALLHIGNIEIKKTRNDASLSADEPNLKLAC 369


>sp|Q875X3|MYO2A_SACCA Myosin-2A OS=Saccharomyces castellii GN=MYO2A
PE=3 SV=2
Length = 1567

Score = 28.9 bits (63), Expect = 8.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3

Query: 170 KQATYNILAYFIHLSNIRILTNRKEGELSAQSEHVLMIC 54
+Q + ILA +H+ NI I R + LS+ ++ + C
Sbjct: 334 QQHIFKILAALLHIGNIEIKKTRNDSSLSSDEPNLKIAC 372


tr_hit_id Q2TLS1
Definition tr|Q2TLS1|Q2TLS1_GINBI Dehydrin OS=Ginkgo biloba
Align length 67
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943575|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E06, 5'
(232 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2TLS1|Q2TLS1_GINBI Dehydrin OS=Ginkgo biloba PE=2 SV=1 33 5.4

>tr|Q2TLS1|Q2TLS1_GINBI Dehydrin OS=Ginkgo biloba PE=2 SV=1
Length = 163

Score = 33.5 bits (75), Expect = 5.4
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = -2

Query: 204 HITLGKMTKISKTGNLQHISLLYSPFEHSNTYKQEGRGAQRSKRARTHDMYRVRVGEEAG 25
H LGK+ + KT S S E K+EG G ++ K + M RV G+E G
Sbjct: 55 HGLLGKLHQGDKTSQGDKTSSGSSSEEDEGGEKKEGGGRRKKKGMKEKIMERVGGGKEEG 114

Query: 24 SSDDLRD 4
S+ ++D
Sbjct: 115 KSEGMQD 121