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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943579
Clone id YMU02A01NGRL0003_E11
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_E11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAAGTGGTAAAAGTGTGACTACGTCTCGCAGTGATTTTGAT
AGTTGAGGGATCGTATCTCGGCTAAATTGATTGAAAAAAAAAACTTTATCTTCACAAAAC
ATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCTATCTCGTCACTCA
TTCATTTCAAGAACTAGGGAAGATAGTGACGAAACATAATTGTTTTGGTACCCCCAGAAA
TACTTGGTTTAATTTCTACTTCCGGGGAGATAAATATAGAAAAAAATCTATGGGTAGACG
TCTCAGATAGCTGACTCATCGTCACTAAACCTCACAGAACAAATCTGGGAAAGAAAGTTG
GAATAAATTCATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCC
TCGTTTCAACAACTCGGTGAGATATATTTCCCTA
■■Homology search results ■■ -
sp_hit_id O51578
Definition sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi
Align length 57
Score (bit) 32.3
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943579|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E11, 5'
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    32   0.97 
sp|Q09WZ1|PSBB_MORIN Photosystem II CP47 chlorophyll apoprotein ...    31   2.9  
sp|Q06RA6|PSBB_JASNU Photosystem II CP47 chlorophyll apoprotein ...    31   2.9  
sp|Q12UT1|FEN_METBU Flap structure-specific endonuclease OS=Meth...    30   4.8  
sp|P04160|PSBB_SPIOL Photosystem II CP47 chlorophyll apoprotein ...    30   6.4  
sp|A4QLM0|PSBB_LOBMA Photosystem II CP47 chlorophyll apoprotein ...    30   6.4  
sp|A4QL45|PSBB_DRANE Photosystem II CP47 chlorophyll apoprotein ...    30   6.4  
sp|A4QK44|PSBB_ARAHI Photosystem II CP47 chlorophyll apoprotein ...    30   6.4  
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    29   8.2  
sp|P06411|PSBB_TOBAC Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q2VEF4|PSBB_SOLTU Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q2MI75|PSBB_SOLLC Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q2MIG2|PSBB_SOLBU Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q68RY1|PSBB_PANGI Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q33C06|PSBB_NICTO Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q3C1K3|PSBB_NICSY Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A4QLV9|PSBB_NASOF Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|B1NWH6|PSBB_MANES Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A4QLD2|PSBB_LEPVR Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q332V1|PSBB_LACSA Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A7Y3H4|PSBB_IPOPU Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q2L932|PSBB_GOSHI Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A0ZZ61|PSBB_GOSBA Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|B2XWP9|PSBB_FAGEA Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q0G9T6|PSBB_DAUCA Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A7M989|PSBB_CUSRE Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A8W3E7|PSBB_CUSEX Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|Q2QD63|PSBB_CUCSA Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A4QKV7|PSBB_CRUWA Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  
sp|A0A361|PSBB_COFAR Photosystem II CP47 chlorophyll apoprotein ...    29   8.4  

>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 213 NIIVLVPPEILGLISTSGEINIEKNLWVDVSDS*LIVTKPHRTNLGKKVGINSSGFV 383
           NIIVL+    + LI+   +I  EKNLW+ +++    +TK  +     K  IN  G +
Sbjct: 622 NIIVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q09WZ1|PSBB_MORIN Photosystem II CP47 chlorophyll apoprotein
           OS=Morus indica GN=psbB PE=3 SV=1
          Length = 508

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++NKS  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENKSLSEAWSK 304


>sp|Q06RA6|PSBB_JASNU Photosystem II CP47 chlorophyll apoprotein
           OS=Jasminum nudiflorum GN=psbB PE=3 SV=1
          Length = 508

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++NKS  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENKSLSEAWSK 304


>sp|Q12UT1|FEN_METBU Flap structure-specific endonuclease
           OS=Methanococcoides burtonii (strain DSM 6242) GN=fen
           PE=3 SV=1
          Length = 338

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 210 RNIIVLVPPEILGLISTSGEINIEKNLWVDVS 305
           +NI V V PE+L L+ + GE+ I +   +D++
Sbjct: 199 KNIYVDVKPEVLSLVDSLGELGITRQQLIDIA 230


>sp|P04160|PSBB_SPIOL Photosystem II CP47 chlorophyll apoprotein
           OS=Spinacia oleracea GN=psbB PE=1 SV=2
          Length = 508

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++N+S  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENQSFSEAWSK 304


>sp|A4QLM0|PSBB_LOBMA Photosystem II CP47 chlorophyll apoprotein
           OS=Lobularia maritima GN=psbB PE=3 SV=1
          Length = 508

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++N+S  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENQSVSEAWSK 304


>sp|A4QL45|PSBB_DRANE Photosystem II CP47 chlorophyll apoprotein
           OS=Draba nemorosa GN=psbB PE=3 SV=1
          Length = 508

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++N+S  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENQSVSEAWSK 304


>sp|A4QK44|PSBB_ARAHI Photosystem II CP47 chlorophyll apoprotein
           OS=Arabis hirsuta GN=psbB PE=3 SV=1
          Length = 508

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++N+S  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENQSVSEAWSK 304


>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
 Frame = +3

Query: 249 LISTSGEINIEKNLWVDVSDS*LIVTKPHR--------TNLGKKVGINSSGFVKIIE 395
           L+ T+ +++ E+N+W+++ D   +    +R         ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|P06411|PSBB_TOBAC Photosystem II CP47 chlorophyll apoprotein
           OS=Nicotiana tabacum GN=psbB PE=3 SV=1
          Length = 508

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 197 GKIVTKHNCFGTPRNTWFNFYFRGDKYRKKSMGXXXXXXXXXXXXSQNKSGKESWNK 367
           G   T    FG  R  W   YF+ + YR+ S G            ++N+S  E+W+K
Sbjct: 259 GSATTPIELFGPTRYQWDQGYFQQEIYRRVSAG-----------LAENQSLSEAWSK 304
tr_hit_id A5FGY4
Definition tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
Align length 43
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943579|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E11, 5'
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacter...    33   9.3  

>tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacterium
           johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
           GN=Fjoh_2505 PE=4 SV=1
          Length = 263

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 328 NLTEQIWERKLE*IHPGLSRLLN---IYLVERDPSFQQLGEIY 447
           NL E IW+R +E + PG+   LN    Y++E DP+   + E+Y
Sbjct: 69  NLCESIWDRFVEKL-PGVLEKLNEDAAYILENDPASNSIDEVY 110