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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943587
Clone id YMU02A01NGRL0003_E22
Library
Length 378
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_E22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTAGAAGGTGCTGCTCTTGTAACTGCTGCACTACAGCGTGTTGGGGCAACATGCCTGCA
AGACTCACTTGTAAATCTAGGAAGCAGCTTAGAGAGGCTGGCGTCTGTTAGTTGTCTTGT
CCATGGGCCCTGGTATGCTTCCTTATTAGTCAACTCTAACTAGACTAGAATTAGGAGAAG
ATATTGTCGACCTTTAGTGTATATGTTTATGTATAGCACAGACAAATACTGAATTTATCT
GTCCCCACCAGCAAAATGTGCGGGAAAAGTTTGTATCCAAAGGCTGCAACTTGTACATAG
ATATTTTTGTAACTTGATGAATCATTTGTAATTCTCNNAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O22207
Definition sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
Align length 33
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943587|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E22, 5'
         (338 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=...    29   8.4  

>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5
           OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2
          Length = 924

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 44  GATCLQDSLVNLGSSLERLASVSCLVHGPWYAS 142
           G+T     L+NLG++    +++ CLVH P +AS
Sbjct: 311 GSTAGLTGLLNLGNTCFMNSAIQCLVHTPEFAS 343
tr_hit_id A9SRP7
Definition tr|A9SRP7|A9SRP7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 47.8
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943587|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E22, 5'
         (338 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SRP7|A9SRP7_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|Q6ZI82|Q6ZI82_ORYSJ Os02g0556700 protein OS=Oryza sativa subs...    47   6e-04
tr|Q6ZI81|Q6ZI81_ORYSJ Putative T-complex protein 11 OS=Oryza sa...    47   6e-04
tr|B8ADX0|B8ADX0_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A3A805|A3A805_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A9SRP8|A9SRP8_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A7QLW1|A7QLW1_VITVI Chromosome chr18 scaffold_122, whole geno...    43   0.009
tr|A5AX61|A5AX61_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|Q01K80|Q01K80_ORYSA H0525C06.4 protein OS=Oryza sativa GN=H05...    42   0.015
tr|B8AU28|B8AU28_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|Q7XQH1|Q7XQH1_ORYSJ OJ000114_01.6 protein (Putative uncharact...    40   0.058
tr|Q0JD06|Q0JD06_ORYSJ Os04g0439100 protein (Fragment) OS=Oryza ...    40   0.058
tr|Q01K79|Q01K79_ORYSA H0525C06.5 protein OS=Oryza sativa GN=H05...    40   0.076
tr|A2XTR9|A2XTR9_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.076
tr|Q9M0R3|Q9M0R3_ARATH Putative uncharacterized protein AT4g0915...    39   0.100
tr|Q7XQG9|Q7XQG9_ORYSJ Os04g0439200 protein OS=Oryza sativa subs...    38   0.29 
tr|A7PYI6|A7PYI6_VITVI Chromosome chr12 scaffold_38, whole genom...    37   0.50 
tr|A7PYI3|A7PYI3_VITVI Chromosome chr12 scaffold_38, whole genom...    33   5.5  

>tr|A9SRP7|A9SRP7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_134192 PE=4 SV=1
          Length = 829

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 5   EGAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLL 148
           EG A   AAL+R+G   L D +    ++LE LA V+C VH PWY+ ++
Sbjct: 765 EGMACAQAALKRIGGVYLMDKVTATAAALEVLAEVTCRVHEPWYSCII 812


>tr|Q6ZI82|Q6ZI82_ORYSJ Os02g0556700 protein OS=Oryza sativa subsp.
            japonica GN=OJ1008_F08.17-1 PE=4 SV=1
          Length = 1166

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 8    GAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLL 148
            G  L  AAL+R+GAT L D +V     L R AS+S  VHGPWY  L+
Sbjct: 1120 GRKLADAALRRIGATKLTDRVVRSAEILIRAASISQQVHGPWYNHLV 1166


>tr|Q6ZI81|Q6ZI81_ORYSJ Putative T-complex protein 11 OS=Oryza
           sativa subsp. japonica GN=OJ1008_F08.17-2 PE=4 SV=1
          Length = 758

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 8   GAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLL 148
           G  L  AAL+R+GAT L D +V     L R AS+S  VHGPWY  L+
Sbjct: 712 GRKLADAALRRIGATKLTDRVVRSAEILIRAASISQQVHGPWYNHLV 758


>tr|B8ADX0|B8ADX0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_07654 PE=4 SV=1
          Length = 1101

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 8    GAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLL 148
            G  L  AAL+R+GAT L D +V     L R AS+S  VHGPWY  L+
Sbjct: 1055 GRKLADAALRRIGATKLTDRVVRSAEILIRAASISQQVHGPWYNHLV 1101


>tr|A3A805|A3A805_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_006927 PE=4 SV=1
          Length = 1151

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 8    GAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLL 148
            G  L  AAL+R+GAT L D +V     L R AS+S  VHGPWY  L+
Sbjct: 1105 GRKLADAALRRIGATKLTDRVVRSAEILIRAASISQQVHGPWYNHLV 1151


>tr|A9SRP8|A9SRP8_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_187677 PE=4 SV=1
          Length = 1169

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +2

Query: 5    EGAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLL 148
            +G  +  AAL+R+G   L D +V    + E +A V+C VH PWY+ +L
Sbjct: 1115 QGMVVAQAALKRIGGLYLTDKVVATAEAAEVVAEVTCRVHEPWYSCIL 1162


>tr|A7QLW1|A7QLW1_VITVI Chromosome chr18 scaffold_122, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001809001
           PE=4 SV=1
          Length = 316

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +2

Query: 2   LEGAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLLVN 154
           L+G  L  AAL+R+GA+ L +++V     L  + +VS  VHG WY  L+ N
Sbjct: 265 LKGRQLAEAALRRIGASLLTENVVEAAEVLIVVTTVSSSVHGAWYEELVKN 315


>tr|A5AX61|A5AX61_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026207 PE=4 SV=1
          Length = 88

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +2

Query: 2   LEGAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASLLVN 154
           L+G  L  AAL+R+GA+ L +++V     L  + +VS  VHG WY  L+ N
Sbjct: 37  LKGRQLAEAALRRIGASLLTENVVEAAEVLIVVTTVSSSVHGAWYEELVKN 87


>tr|Q01K80|Q01K80_ORYSA H0525C06.4 protein OS=Oryza sativa
            GN=H0525C06.4 PE=4 SV=1
          Length = 1113

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = +2

Query: 5    EGAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASL 145
            +G  L  A L R+GA  L D +V  G  L ++A +S  VHGPWY +L
Sbjct: 1065 KGKKLAEAPLLRLGAAKLADRVVKAGEVLIKMAVISEKVHGPWYKAL 1111


>tr|B8AU28|B8AU28_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_16001 PE=4 SV=1
          Length = 1121

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +2

Query: 5    EGAALVTAALQRVGATCLQDSLVNLGSSLERLASVSCLVHGPWYASL 145
            +G  L  A L+R+G   L D +V  G  L ++A +S  VHGPWY +L
Sbjct: 1073 KGKKLAEAPLRRLGTAKLADRVVKAGEVLIKMAVISEKVHGPWYKAL 1119