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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943589
Clone id YMU02A01NGRL0003_E24
Library
Length 390
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_E24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATATACTTGCTGAAACTGTCAAAAGGAGGAGAAAGACTACCAGCATGCCCTACTCTCGCT
CGATTGTTGGTGCTTCGCTTGATGTGATTCACATGATACTCGTCTAAAAGACTGATCTTA
CAGCTGCTGCTCGTGAAGCTGCGCTAAGGGAGATCATTGAGCCAATCATGAAAACCTAGG
ATGAAAAGAAGGCTAAGAAGGCTGATCTAGTGTCTTACTCCTCCTGAGCTGCCGCCCTAG
ATGCTATGTATAAAGGTGCAATGCTTTTAGGTCCTAAGCTTGATGGTGATGATGTGAATC
CATCAAGGTGTACGCCGTATTCCTTTGACTCTGAAGACGGGGTCTCTTTTACTTCTATGA
TTTGTAAGCCGAGTTCTCAATTTTGTCTTA
■■Homology search results ■■ -
sp_hit_id O65743
Definition sp|O65743|RL24_CICAR 60S ribosomal protein L24 OS=Cicer arietinum
Align length 92
Score (bit) 51.2
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943589|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E24, 5'
         (390 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O65743|RL24_CICAR 60S ribosomal protein L24 OS=Cicer arietinu...    51   2e-06
sp|P50888|RL24_HORVU 60S ribosomal protein L24 OS=Hordeum vulgar...    49   8e-06
sp|Q9FUL4|RL24_PRUAV 60S ribosomal protein L24 OS=Prunus avium G...    47   2e-05
sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis...    42   7e-04
sp|Q42347|RL241_ARATH 60S ribosomal protein L24-1 OS=Arabidopsis...    42   0.001
sp|Q9QWY8|ASAP1_MOUSE Arf-GAP with SH3 domain, ANK repeat and PH...    30   4.9  
sp|Q8VIM6|STRC_MOUSE Stereocilin OS=Mus musculus GN=Strc PE=2 SV=1     29   8.4  
sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protei...    29   8.4  

>sp|O65743|RL24_CICAR 60S ribosomal protein L24 OS=Cicer arietinum
           GN=RPL24 PE=2 SV=1
          Length = 164

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 32/92 (34%), Positives = 45/92 (48%)
 Frame = +3

Query: 12  ETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*DEXX 191
           E VK+RR+ T  PYSRSIVGA+L+VI      K ++               I KT DE  
Sbjct: 68  EAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKK 127

Query: 192 XXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
               ++ S +  +     + KGA+  GPK+ G
Sbjct: 128 AKKAEVASKAQKSQGKGNVQKGALPKGPKMGG 159


>sp|P50888|RL24_HORVU 60S ribosomal protein L24 OS=Hordeum vulgare
           GN=RPL24 PE=2 SV=1
          Length = 162

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 34/95 (35%), Positives = 44/95 (46%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE  K+RR+TT  PYSRSIVGA+L+VI      K ++               I KT D
Sbjct: 65  IHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      ++           A+ KG+   GPKL G
Sbjct: 125 EKKAKKAEVTKSQKSQGGKGAVQKGSK--GPKLGG 157


>sp|Q9FUL4|RL24_PRUAV 60S ribosomal protein L24 OS=Prunus avium
           GN=RPL24 PE=2 SV=1
          Length = 186

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 33/95 (34%), Positives = 41/95 (43%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I  E VK+RR+TT  PYSRSIVGA+L+VI      K ++               I KT D
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      ++               GA   GPKL G
Sbjct: 125 EKKAKKAEVTKSQKSQGKGSIAKGGAQPKGPKLGG 159


>sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis
           thaliana GN=RPL24B PE=2 SV=2
          Length = 163

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 32/92 (34%), Positives = 40/92 (43%)
 Frame = +3

Query: 12  ETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*DEXX 191
           E VKRRR+ T  PYSRSIVGA+L+VI      K ++               I KT DE  
Sbjct: 68  EAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKK 127

Query: 192 XXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
               +  S      A +     A   GPK+ G
Sbjct: 128 AKKVEFASKQQKVKA-NFPKAAAASKGPKVGG 158


>sp|Q42347|RL241_ARATH 60S ribosomal protein L24-1 OS=Arabidopsis
           thaliana GN=RPL24A PE=1 SV=2
          Length = 164

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/58 (43%), Positives = 30/58 (51%)
 Frame = +3

Query: 12  ETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*DE 185
           E VKRRR+ T  PYSRSIVGA+L+VI      K ++               I KT DE
Sbjct: 68  EAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDE 125


>sp|Q9QWY8|ASAP1_MOUSE Arf-GAP with SH3 domain, ANK repeat and PH
           domain-containing protein 1 OS=Mus musculus GN=Asap1
           PE=1 SV=1
          Length = 1147

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 376 ELGLQIIEVKETPSSESKEYGVHLDGFTSSPSSLGPKSIAPLYIASRA 233
           +L   +  +K+T   E K+     D   SS   L PK +  LY+ASRA
Sbjct: 267 KLAADLYNIKQTQDEEKKQLTALRDLIKSS-LQLDPKEVGGLYVASRA 313


>sp|Q8VIM6|STRC_MOUSE Stereocilin OS=Mus musculus GN=Strc PE=2 SV=1
          Length = 1809

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 270 GPKLDGDDVNPSRCTPYSFDSEDGVSFTSMIC 365
           GP LD  D  P R  P      DG SF  M+C
Sbjct: 547 GPTLDATDFPPCRVGPCGERCPDGGSFLLMVC 578


>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6
           OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2
          Length = 154

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 334 SESKEYGVHLDGFTSSPSSLGPKSIAPLYIASRAAAQ 224
           S+ K+ G+HL+    S SS+G + +  + +A R+A++
Sbjct: 73  SDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASE 109
tr_hit_id B8LQH6
Definition tr|B8LQH6|B8LQH6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 95
Score (bit) 56.2
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943589|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_E24, 5'
         (390 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQH6|B8LQH6_PICSI Putative uncharacterized protein OS=Picea...    56   8e-07
tr|A9PHF8|A9PHF8_POPTR Putative uncharacterized protein OS=Popul...    56   1e-06
tr|B6TLK1|B6TLK1_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=...    51   3e-05
tr|B4FKH2|B4FKH2_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|A9P8N0|A9P8N0_POPTR Putative uncharacterized protein OS=Popul...    50   4e-05
tr|B7FN60|B7FN60_MEDTR Putative uncharacterized protein OS=Medic...    50   6e-05
tr|B3TM46|B3TM46_ELAGV 60S ribosomal protein L24 OS=Elaeis guine...    50   6e-05
tr|B4FFR7|B4FFR7_MAIZE Putative uncharacterized protein OS=Zea m...    50   7e-05
tr|B6T1G6|B6T1G6_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=...    49   1e-04
tr|B6TTC4|B6TTC4_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=...    48   3e-04
tr|A7QVI1|A7QVI1_VITVI Chromosome chr16 scaffold_189, whole geno...    48   3e-04
tr|Q75KZ3|Q75KZ3_ORYSJ Os05g0486700 protein OS=Oryza sativa subs...    47   4e-04
tr|Q5N754|Q5N754_ORYSJ cDNA clone:001-018-A11, full insert seque...    47   4e-04
tr|B8ABA2|B8ABA2_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A2ZYY6|A2ZYY6_ORYSJ Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A2Y5X8|A2Y5X8_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|B3TLK8|B3TLK8_ELAGV 60S ribosomal protein L24 OS=Elaeis guine...    47   5e-04
tr|A9SBP8|A9SBP8_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|A9P8J6|A9P8J6_POPTR Putative uncharacterized protein OS=Popul...    47   6e-04
tr|Q8L3Y6|Q8L3Y6_ORYSJ Putative 60S ribosomal protein L24 OS=Ory...    46   8e-04
tr|Q0D7Q0|Q0D7Q0_ORYSJ Os07g0224000 protein OS=Oryza sativa subs...    46   8e-04
tr|B8B8G9|B8B8G9_ORYSI Putative uncharacterized protein OS=Oryza...    46   8e-04
tr|A9RF19|A9RF19_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9SZ60|A9SZ60_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A7PPN3|A7PPN3_VITVI Chromosome chr8 scaffold_23, whole genome...    44   0.003
tr|Q1SN35|Q1SN35_MEDTR Ribosomal protein L24E OS=Medicago trunca...    44   0.004
tr|A9SAK6|A9SAK6_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9SFW0|A9SFW0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|B6T6E3|B6T6E3_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=...    43   0.007
tr|A7QZS6|A7QZS6_VITVI Chromosome chr13 scaffold_286, whole geno...    43   0.007

>tr|B8LQH6|B8LQH6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 164

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 38/95 (40%), Positives = 48/95 (50%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+TT+ PYSRSIVGASL+VI      KT++               I KT D
Sbjct: 65  IHAEQVKKRRRTTNKPYSRSIVGASLEVIQKKRTEKTEVRAAAREAALKEIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + V+    A     + KG +  GPKL G
Sbjct: 125 EKKAKKAETVAKGPKAQTKGNIPKGNISKGPKLGG 159


>tr|A9PHF8|A9PHF8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 163

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 37/95 (38%), Positives = 51/95 (53%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AETVK+RR+TT  PYSRSIVGA+L+VI      K ++               I KT D
Sbjct: 65  IAAETVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      +++S +   ++  ++ KGA   GPKL G
Sbjct: 125 EKKAKKAEVMSKAQ-KSSKGSLPKGAAPKGPKLGG 158


>tr|B6TLK1|B6TLK1_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=2
           SV=1
          Length = 161

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 39/95 (41%), Positives = 47/95 (49%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+ T  PYSRSIVGASL+VI      K ++               I KT D
Sbjct: 65  IHAEAVKKRRRATKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + VS S  A    A+ KG+   GPKL G
Sbjct: 125 EKKAKKAE-VSKSQKAQTKGAVQKGSK--GPKLGG 156


>tr|B4FKH2|B4FKH2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 39/95 (41%), Positives = 47/95 (49%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+ T  PYSRSIVGASL+VI      K ++               I KT D
Sbjct: 10  IHAEAVKKRRRATKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 69

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + VS S  A    A+ KG+   GPKL G
Sbjct: 70  EKKAKKAE-VSKSQKAQTKGAVQKGSK--GPKLGG 101


>tr|A9P8N0|A9P8N0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 163

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 34/95 (35%), Positives = 48/95 (50%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AET+K+RR+ T  PYSRSIVGA+L+VI      K ++               I KT D
Sbjct: 65  IAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      ++ +     ++  ++ KGA   GPKL G
Sbjct: 125 EKRAKKAEVTAKVQ-KSSKGSVPKGAAPKGPKLGG 158


>tr|B7FN60|B7FN60_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 163

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 34/95 (35%), Positives = 46/95 (48%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I  E VK+RR+ T  PYSRSIVGA+L+VI      K ++               I KT D
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      ++ S +   +    + KGAM  GPK+ G
Sbjct: 125 EKKAKKAEVASKAQ-KSGKGNVQKGAMPKGPKMGG 158


>tr|B3TM46|B3TM46_ELAGV 60S ribosomal protein L24 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 163

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 35/95 (36%), Positives = 46/95 (48%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+TT  PYSRSIVGA+L+VI      K ++               I KT D
Sbjct: 65  IHAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + ++ +       +M KG    GPKL G
Sbjct: 125 EKKAKKAETLAKTQ-KTQTKSMPKGPASKGPKLGG 158


>tr|B4FFR7|B4FFR7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 161

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 38/95 (40%), Positives = 47/95 (49%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+ T  PYSRSIVGASL+VI      K ++               I KT D
Sbjct: 65  IHAEAVKKRRRATKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + V+ S  A    A+ KG+   GPKL G
Sbjct: 125 EKKAKKAE-VTKSQKAQTKGAVQKGSK--GPKLGG 156


>tr|B6T1G6|B6T1G6_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=2
           SV=1
          Length = 161

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 38/95 (40%), Positives = 46/95 (48%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+ T  PYSRSIVGASL+VI      K ++               I KT D
Sbjct: 65  IHAEAVKKRRRATKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + VS S       A+ KG+   GPKL G
Sbjct: 125 EKKAKKAE-VSKSQKTQTKGAVQKGSK--GPKLGG 156


>tr|B6TTC4|B6TTC4_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=2
           SV=1
          Length = 161

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 37/95 (38%), Positives = 46/95 (48%)
 Frame = +3

Query: 3   ILAETVKRRRKTTSMPYSRSIVGASLDVIHMILV*KTDLTXXXXXXXXXXXXXPIMKT*D 182
           I AE VK+RR+    PYSRSIVGASL+VI      K ++               I KT D
Sbjct: 65  IHAEAVKKRRRANKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 183 EXXXXXXDLVSYSS*AAALDAMYKGAMLLGPKLDG 287
           E      + V+ S  A    A+ KG+   GPKL G
Sbjct: 125 EKKAKKAE-VTKSQKAQTKGAVQKGSK--GPKLGG 156