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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943592
Clone id YMU02A01NGRL0003_F04
Library
Length 265
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_F04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATGTCCTGTGATGTCGTGTGATGTGACTGTCGATTTTGTACATGTGCTAGATGTGTGTTC
CTAGTACGTAGGTACTAACAGTCAGTGTCTGCTAAGACGGTTTATGGCTTTTGTCGGTTT
TGCAGGCGTAATCGCGGTCGATTACAATGCTTTCAAGAGGGGGGTATGTCACAAAGTGAT
GACGTGGCGGATAGCAGAAACCCTAATTTTCAGAAATCGTGGAGGCTGATTTTTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4PR49
Definition sp|Q4PR49|EXP17_ORYSJ Expansin-A17 OS=Oryza sativa subsp. japonica
Align length 15
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943592|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F04, 5'
         (236 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4PR49|EXP17_ORYSJ Expansin-A17 OS=Oryza sativa subsp. japoni...    29   8.4  

>sp|Q4PR49|EXP17_ORYSJ Expansin-A17 OS=Oryza sativa subsp. japonica
           GN=EXPA17 PE=2 SV=2
          Length = 284

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 202 GFCYPPRHHFVTYPP 158
           G+C PPRHHF   PP
Sbjct: 144 GWCNPPRHHFDMAPP 158
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943592|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F04, 5'
         (236 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******