NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943593
Clone id YMU02A01NGRL0003_F05
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_F05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGGGAATGGTTGAAGTGCTGTTCTTGTGAATATGCTGACTTGAAATGAAGTGGTCACTAA
GGCAAGCACAGAGAGTGTGTGAGTTGTCACTTGACCCACACAATCCAATGGCCGTGGCGG
ATACAGGACAGCACAGAAAGTGTGTTTCACGATGTGGATAAGGGAGGGGATAAGCTAAGG
CAATTTGTAACAGTGTATCCTAGAACGTGCATGATTTGTATAGTTGTCGTCGACCTTTGT
GCTCAACATGAAGGTTGCAAGTTGGTCTAGAAAGTTAAACAGTGCTTGCGGTTTCAGCGT
CATGATCGCAAGTTTGTAGAAATGAGTGTCTTGGAGGGTTTTTGTCGCAAGGCAGGGGTT
AGCTCCTGCTCCAGATGTCATCTCTAGACTTCTCTATACCTACCCCCTCACTACTGTAAC
TCTGCCAAAAGGGGCAGAGTTACACAGGCAAAGCATTCCCATAGGTATATGATGTAAT
■■Homology search results ■■ -
sp_hit_id O54908
Definition sp|O54908|DKK1_MOUSE Dickkopf-related protein 1 OS=Mus musculus
Align length 38
Score (bit) 30.4
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943593|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F05, 5'
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O54908|DKK1_MOUSE Dickkopf-related protein 1 OS=Mus musculus ...    30   4.3  
sp|Q54QD0|C5174_DICDI Probable cytochrome P450 517A4 OS=Dictyost...    30   4.3  
sp|Q54QD2|C5171_DICDI Probable cytochrome P450 517A1 OS=Dictyost...    30   4.3  
sp|Q2QYL3|NLTP3_ORYSJ Non-specific lipid-transfer protein 3 OS=O...    29   9.6  
sp|A2ZAS9|NLTP3_ORYSI Non-specific lipid-transfer protein 3 OS=O...    29   9.6  
sp|P12606|ITB1A_XENLA Integrin beta-1-A OS=Xenopus laevis GN=itg...    29   9.6  
sp|Q9UI26|IPO11_HUMAN Importin-11 OS=Homo sapiens GN=IPO11 PE=1 ...    29   9.6  
sp|O94907|DKK1_HUMAN Dickkopf-related protein 1 OS=Homo sapiens ...    29   9.6  

>sp|O54908|DKK1_MOUSE Dickkopf-related protein 1 OS=Mus musculus
           GN=Dkk1 PE=2 SV=1
          Length = 272

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 190 LQIALAYPLPYPHRETHFLCCPVSATAIGLCGSSDNSH 77
           +QI LA         TH +CCP +    G+C  SD+SH
Sbjct: 111 VQICLACRKRRKRCMTHAMCCPGNYCKNGICMPSDHSH 148


>sp|Q54QD0|C5174_DICDI Probable cytochrome P450 517A4
           OS=Dictyostelium discoideum GN=cyp517a4 PE=3 SV=1
          Length = 483

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 448 PV*LCPFWQSYSSEGVGIEKSRDDIWSRS 362
           P  L P W+  SS G+G+  S DD W R+
Sbjct: 102 PSLLVPGWRYASSNGLGVMSSSDDEWKRA 130


>sp|Q54QD2|C5171_DICDI Probable cytochrome P450 517A1
           OS=Dictyostelium discoideum GN=cyp517a1 PE=2 SV=1
          Length = 483

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 448 PV*LCPFWQSYSSEGVGIEKSRDDIWSRS 362
           P  L P W+  SS G+G+  S DD W R+
Sbjct: 102 PSVLVPGWRYASSNGLGVMSSSDDKWKRA 130


>sp|Q2QYL3|NLTP3_ORYSJ Non-specific lipid-transfer protein 3
           OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1
          Length = 121

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 133 CCPVSATAIGLCGSSDNSHTLCACLSDHFISSQHIHKNSTSTIP 2
           CC    T  G   SS +  T C+CL +   S ++++  + ++IP
Sbjct: 57  CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIP 100


>sp|A2ZAS9|NLTP3_ORYSI Non-specific lipid-transfer protein 3
           OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1
          Length = 121

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 133 CCPVSATAIGLCGSSDNSHTLCACLSDHFISSQHIHKNSTSTIP 2
           CC    T  G   SS +  T C+CL +   S ++++  + ++IP
Sbjct: 57  CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIP 100


>sp|P12606|ITB1A_XENLA Integrin beta-1-A OS=Xenopus laevis
           GN=itgb1-A PE=2 SV=1
          Length = 798

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 205 TCMICIVVVDLCAQHEGCKLV*KVKQCLRFQRHDRKFVEM 324
           TC +C   V +CA+H+ C       QC  FQ+ +++ V M
Sbjct: 629 TCELCQTCVGVCAEHKEC------VQCRAFQKGEKQDVCM 662


>sp|Q9UI26|IPO11_HUMAN Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1
          Length = 975

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 336  LQDTHFYKLAIMTLKPQALFNFLDQLATFMLSTKVD--DNYTNHARSRIHCYKLP*LIPS 163
            LQ+T F+  +++          +DQL   M+   VD  DN T   R ++    L  L+PS
Sbjct: 800  LQNTSFFS-SLLNEMAHKFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPS 858

Query: 162  LIHIVKHTFCAVL 124
               +++  FC ++
Sbjct: 859  DNSVIQDKFCGII 871


>sp|O94907|DKK1_HUMAN Dickkopf-related protein 1 OS=Homo sapiens
           GN=DKK1 PE=1 SV=1
          Length = 266

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 199 DTLLQIALAYPLPYPHRETHFLCCPVSATAIGLCGSSDNSH 77
           D  +QI LA          H +CCP +    G+C SSD +H
Sbjct: 105 DAGVQICLACRKRRKRCMRHAMCCPGNYCKNGICVSSDQNH 145
tr_hit_id Q6PYY7
Definition tr|Q6PYY7|Q6PYY7_OSTTA DPE1 OS=Ostreococcus tauri
Align length 50
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943593|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F05, 5'
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6PYY7|Q6PYY7_OSTTA DPE1 OS=Ostreococcus tauri GN=dpe1 PE=4 SV=1    35   2.4  
tr|Q3AEH4|Q3AEH4_CARHZ Cytochrome c, NapC/NirT family OS=Carboxy...    34   3.2  
tr|A7T053|A7T053_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   4.2  
tr|A8B3M8|A8B3M8_GIALA Putative uncharacterized protein OS=Giard...    33   7.0  

>tr|Q6PYY7|Q6PYY7_OSTTA DPE1 OS=Ostreococcus tauri GN=dpe1 PE=4 SV=1
          Length = 601

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 109 WPWRIQDSTESVFHDVDKGGDKLRQFVTVYPRTCMICIVVVDLCAQHEGC 258
           WPWRI +    VF  +D   DKL    TVY R     + VVD  ++ + C
Sbjct: 540 WPWRIGEP--GVFATLDAEADKLASLATVYDR-----VAVVDDSSRRDAC 582


>tr|Q3AEH4|Q3AEH4_CARHZ Cytochrome c, NapC/NirT family
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=CHY_0604 PE=4 SV=1
          Length = 454

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
 Frame = +1

Query: 67  HRECVSCHLTHTIQWPWRIQDSTESVFHDVDKG-------GDKLR-QFVTVYPRTCMICI 222
           +R C SCH  + +  P  I  S E   H   KG       GD +  +  T+  + C+ C 
Sbjct: 100 NRRCQSCHELNKLPGPTAINFSHE--LHAGKKGLECVTCHGDLVHGEPKTLKMQDCLDCH 157

Query: 223 VVVDLCAQHEGCKLV*KVKQCLRFQRHDRKFVEMSVLEGFCRKAGVSSCSRCHL*TSLYL 402
              +   + E C    + K  ++ Q HD K++      G   K  + SC+ CH  T    
Sbjct: 158 KAKNGPVKCESCH---QSKATMKPQNHDAKWL---AAHGEAAKKDLKSCTTCH--TGELG 209

Query: 403 PPHYCNSAKRG 435
              YCN+   G
Sbjct: 210 VEKYCNTCHNG 220


>tr|A7T053|A7T053_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g139926 PE=4 SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 48  KWSLRQAQRVCELSLDPHNPMAVADTGQHRKCVSRCG*GRG*AKAICNSVS*NVHD---L 218
           +WS  +  R C+L   P  P     TG  R+C + CG G+      C +   NVH    +
Sbjct: 296 QWSRLKVTRPCQLP--PCPPPNEWKTGPWRQCSANCGQGKQTRIVFCTNEVRNVHQQVPI 353

Query: 219 YSCR 230
           Y+CR
Sbjct: 354 YNCR 357


>tr|A8B3M8|A8B3M8_GIALA Putative uncharacterized protein OS=Giardia
            lamblia ATCC 50803 GN=GL50803_24734 PE=4 SV=1
          Length = 1853

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -2

Query: 336  LQDTHFYKLAIMTLKPQALFNFLDQLATFMLSTKVDDNYTNHARS 202
            +Q   F+ L I  L  Q  F FLD  A  MLS  V  NYT+ + S
Sbjct: 913  VQKAAFFLLCIHALAKQLQFYFLDSAAVQMLSILVPQNYTSSSGS 957