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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943601
Clone id YMU02A01NGRL0003_F16
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_F16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
CGGACAATAACAGATTTAGTGTGCAAGACTGCAAGGTGAAGCTGATGATGCTCATTATTT
TAAATCCATCTTTTGTAAAAATTTATTTGATTGAAGTCTGTACAGAGAATGAGGACATAC
TTACCTCAAGGAGCCTTGCAAGTATTGGGTATGTAATACCTGCATTAAGGATAGATACAA
GTGGTTTTTCCTCATCATTTGTAACCATATTTTGGCTGATGTGCGTATATGTTAATAAAA
GCTTGGACTTTGTAGTCTTTTTCATAAGCTTTTTACCAGATTTTGTCTGAAAGATGCTTT
ACAAATTTATGAAGAAAAGGAGGGAAAATTTAAACAGATGCTGATTGGCCTGACGTCGAA
TGAAACCAATCGTTGTAAATGGACAGTCATAAGGAGTTGGATTTTAAACTTTCCCACTTA
CGAGTAANAAAAAAAAAAACAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q54KX3
Definition sp|Q54KX3|VP13F_DICDI Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum
Align length 78
Score (bit) 30.0
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943601|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F16, 5'
         (425 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54KX3|VP13F_DICDI Putative vacuolar protein sorting-associat...    30   4.0  
sp|Q00937|TETQ_BACTN Tetracycline resistance protein tetQ OS=Bac...    29   6.8  
sp|Q28H30|CE022_XENTR UPF0489 protein C5orf22 homolog OS=Xenopus...    29   6.8  
sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norv...    29   8.8  

>sp|Q54KX3|VP13F_DICDI Putative vacuolar protein sorting-associated
            protein 13F OS=Dictyostelium discoideum GN=vps13F PE=3
            SV=1
          Length = 4246

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 27/78 (34%), Positives = 36/78 (46%)
 Frame = +3

Query: 105  ENEDILTSRSLASIGYVIPALRIDTSGFSSSFVTIFWLMCVYVNKSLDFVVFFISFLPDF 284
            E E+ L S S++S+    P      SG S      F  + V +NK L   V  I  L DF
Sbjct: 1557 EREEHLISISISSVQRNSPQY----SGISQQIDVSFNTLFVNINKKL---VIKIMNLVDF 1609

Query: 285  V*KMLYKFMKKRRENLNR 338
            V K + + + KRRE   R
Sbjct: 1610 VEKTIVETVMKRREKRKR 1627


>sp|Q00937|TETQ_BACTN Tetracycline resistance protein tetQ
           OS=Bacteroides thetaiotaomicron GN=tetQ PE=3 SV=1
          Length = 641

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  IFCKNLFD*SLYRE*GHTYLKEPCKYWVCN 157
           +F +N+ D S+Y     TY+KE  K +VCN
Sbjct: 153 LFMQNVVDGSVYPVCSQTYIKEEYKEFVCN 182


>sp|Q28H30|CE022_XENTR UPF0489 protein C5orf22 homolog OS=Xenopus
           tropicalis GN=TEgg058p12.1 PE=2 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 187 KPLVSILNAGITYPILARLLEVSMSSFSVQTSIK*IFTKDGFKIM 53
           K ++ IL  G  Y     +L++ +  FSV+   K ++T+D +KI+
Sbjct: 233 KNIIQILEKGTVY-----VLDIDLDFFSVKNPFKEMYTQDEYKIL 272


>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus
            norvegicus GN=Dnah7 PE=2 SV=2
          Length = 4057

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = +2

Query: 206  HILADVRIC**KLGLC-SLFHK--LFTRFCLKDALQIYEEKEGKFKQML-----IGLTSN 361
            HIL D       + +C SLF K  +   FCL   L I+E    K +        IGL + 
Sbjct: 3289 HILRDHFTYSLYVNICRSLFEKDKMLFSFCLTVNLLIHENAINKAEWRFLLTGGIGLDNP 3348

Query: 362  ETNRCKWTVIRSW 400
             TN C W   +SW
Sbjct: 3349 YTNPCTWLPQKSW 3361
tr_hit_id Q4V1S5
Definition tr|Q4V1S5|Q4V1S5_BACCZ Alkaline phosphatase, DedA family OS=Bacillus cereus (strain ZK / E33L)
Align length 63
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943601|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F16, 5'
         (425 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4V1S5|Q4V1S5_BACCZ Alkaline phosphatase, DedA family OS=Baci...    35   2.4  
tr|B4IP68|B4IP68_DROSE GM16934 OS=Drosophila sechellia GN=GM1693...    34   3.1  
tr|B4I9Z5|B4I9Z5_DROSE GM19246 (GM11047) OS=Drosophila sechellia...    34   3.1  
tr|Q6ENK5|Q6ENK5_ORYSJ Os09g0281900 protein OS=Oryza sativa subs...    34   4.1  
tr|B8BDR2|B8BDR2_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|A3BWW0|A3BWW0_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.1  

>tr|Q4V1S5|Q4V1S5_BACCZ Alkaline phosphatase, DedA family
           OS=Bacillus cereus (strain ZK / E33L) GN=pE33L466_0174
           PE=4 SV=1
          Length = 206

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 51  LIILNPSFVKIYLIEVCTENEDILTSRS---LASIGYVIPALRIDTSGFSSSFVTIFWLM 221
           L ILN    KIY+ E   E   IL  +    L  IGY IP +R  T+ F+      FW  
Sbjct: 77  LPILNKYGPKIYIKEQHIEKTHILFEKYGPFLLMIGYFIPGVRHLTAYFAGMSNLTFWRF 136

Query: 222 CVY 230
           C+Y
Sbjct: 137 CLY 139


>tr|B4IP68|B4IP68_DROSE GM16934 OS=Drosophila sechellia GN=GM16934
           PE=4 SV=1
          Length = 153

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 113 GHTYLKEPCKYWV-CNTCIK---DRYKWFFLIICNHILAD 220
           G T   E CK W+ CN+C     D+   FFL+ C+H+  +
Sbjct: 7   GQTVEPEACKLWIHCNSCCALFCDKKHTFFLLACHHVFCE 46


>tr|B4I9Z5|B4I9Z5_DROSE GM19246 (GM11047) OS=Drosophila sechellia
           GN=GM11047 PE=4 SV=1
          Length = 240

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 113 GHTYLKEPCKYWV-CNTCIK---DRYKWFFLIICNHILAD 220
           G T   E CK W+ CN+C     D+   FFL+ C+H+  +
Sbjct: 7   GQTVEPEACKLWIHCNSCCALFCDKKHTFFLLACHHVFCE 46


>tr|Q6ENK5|Q6ENK5_ORYSJ Os09g0281900 protein OS=Oryza sativa subsp.
           japonica GN=P0645D04.24 PE=4 SV=1
          Length = 1740

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 217 SQNMVTNDEEKPLVSILNAGITYPILARLLEVSMSSFSVQTSIK*IFTKDG-FKIMSIIS 41
           SQN ++ DEEK  +  LNA + Y +L       +S+ SV   I  +F  DG FK++  + 
Sbjct: 152 SQNKLSPDEEKRALQKLNASVRYKVLVTPRPKEVSNVSVADGIA-VFRVDGEFKVLLTLG 210

Query: 40  F 38
           +
Sbjct: 211 Y 211


>tr|B8BDR2|B8BDR2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30696 PE=4 SV=1
          Length = 1740

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 217 SQNMVTNDEEKPLVSILNAGITYPILARLLEVSMSSFSVQTSIK*IFTKDG-FKIMSIIS 41
           SQN ++ DEEK  +  LNA + Y +L       +S+ SV   I  +F  DG FK++  + 
Sbjct: 152 SQNKLSPDEEKRALQKLNASVRYKVLVTPRPKEVSNVSVADGIA-VFRVDGEFKVLLTLG 210

Query: 40  F 38
           +
Sbjct: 211 Y 211


>tr|A3BWW0|A3BWW0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027532 PE=4 SV=1
          Length = 1666

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 217 SQNMVTNDEEKPLVSILNAGITYPILARLLEVSMSSFSVQTSIK*IFTKDG-FKIMSIIS 41
           SQN ++ DEEK  +  LNA + Y +L       +S+ SV   I  +F  DG FK++  + 
Sbjct: 152 SQNKLSPDEEKRALQKLNASVRYKVLVTPRPKEVSNVSVADGIA-VFRVDGEFKVLLTLG 210

Query: 40  F 38
           +
Sbjct: 211 Y 211