DK943605
Clone id YMU02A01NGRL0003_F22
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_F22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AGAGCTCCAGATTAGCAGAGCAAGGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCGTCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGT
GGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAACTGCAGAGTGCGC
CAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTNAGAGGCAGGTGCA
GGTCTCCGGGCTCCCTTGTCCAG
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 147
Score (bit) 178.0
E-value 2.0e-44
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943605|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F22, 5'
(563 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 178 2e-44
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 174 3e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 174 4e-43
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 174 4e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 173 5e-43
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 173 6e-43
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 172 8e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 172 8e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 172 1e-42
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 172 1e-42
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 172 1e-42
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 172 1e-42
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha... 172 1e-42
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 171 2e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai... 171 2e-42
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 171 2e-42
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai... 171 3e-42
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 171 3e-42
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha... 170 4e-42
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 170 5e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 169 9e-42
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 169 9e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 169 9e-42
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 169 1e-41
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 169 1e-41
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 168 1e-41
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 168 1e-41
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 168 2e-41
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 167 3e-41
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 167 3e-41

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 178 bits (451), Expect = 2e-44
Identities = 84/147 (57%), Positives = 104/147 (70%), Gaps = 5/147 (3%)
Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSPNPLAV--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 283
L+ F+GLK+ F K+ N + SNG RV M VW P KK+ETLSYLPPLS E
Sbjct: 22 LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
++K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82 ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 RETAECAKEYPEAFIRVLGFDAXRQVQ 541
+E EC KEYP AFIRV+GFD RQVQ
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQ 168


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 174 bits (441), Expect = 3e-43
Identities = 85/144 (59%), Positives = 104/144 (72%), Gaps = 5/144 (3%)
Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--VSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+ LK+T+ F K+ N + SNG RV M VW P KKFETLSYLPPLSSEQ+AK
Sbjct: 28 FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
+VD+++RK PC+EF+ + G VYREH GYYDGRYW MWKLPMFGC D++ VL+E
Sbjct: 88 EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQV 544
EC K YP AFIR++GFD RQVQ+
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQI 171


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
SV=1
Length = 178

Score = 174 bits (440), Expect = 4e-43
Identities = 80/139 (57%), Positives = 98/139 (70%)
Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 304
S + T FA S P SNG RV M VW P KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31 SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 305 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAECAK 484
+++R GW PCIEF K+G VYRE+ + GYYDGRYW MWKLPMFGC D++ VL+E EC+K
Sbjct: 88 YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 485 EYPEAFIRVLGFDAXRQVQ 541
YP+ F R++GFD RQVQ
Sbjct: 148 AYPDYFNRIIGFDNTRQVQ 166


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
Length = 178

Score = 174 bits (440), Expect = 4e-43
Identities = 83/146 (56%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Frame = +2

Query: 116 LSKSFSGLKATTLF-APKSPNPLA--VSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 286
L+ F+GLK++ F K N + SNGSRV+ M VW P KKFETLSYLPPL+ EQ
Sbjct: 21 LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 463
+ K+V++++RKGW PC+EF+ + G V+R++ GYYDGRYW MW+LP+FG DAA VL+
Sbjct: 81 LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 ETAECAKEYPEAFIRVLGFDAXRQVQ 541
E AEC EYPEAFIR++GFD RQVQ
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQ 166


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
Length = 178

Score = 173 bits (439), Expect = 5e-43
Identities = 82/142 (57%), Positives = 103/142 (72%), Gaps = 4/142 (2%)
Frame = +2

Query: 128 FSGLKATTLF-APKSPNPLAV--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
F+GLK+ F K N + SNG RV M VW P KK+ETLSYLPPL+ Q+AK+
Sbjct: 25 FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAE 475
VD+++RK W PC+EF+ + G VYRE+ GYYDGRYW MWKLPMFGC D+A V++E AE
Sbjct: 85 VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 476 CAKEYPEAFIRVLGFDAXRQVQ 541
C KEYP+A+IR++GFD RQVQ
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQ 166


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
PE=1 SV=2
Length = 180

Score = 173 bits (438), Expect = 6e-43
Identities = 81/143 (56%), Positives = 103/143 (72%), Gaps = 5/143 (3%)
Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLA--VSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+GLK++ F K+ N + SNG RV+ M VW P KKFETLSYLP L+ ++AK
Sbjct: 24 FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 296 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
+VD+++R W PC+EF+ + G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E
Sbjct: 84 EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQ 541
EC KEYP AFIR++GFD RQVQ
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQ 166


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
Length = 177

Score = 172 bits (437), Expect = 8e-43
Identities = 83/142 (58%), Positives = 100/142 (70%), Gaps = 4/142 (2%)
Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAV--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+GL+++ F K+ N L+ SNG RVS M VW P KKFETLSYLPPLS E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAE 475
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAXRQVQ 541
K YPE F+R++GFD RQVQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQ 167


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
Length = 177

Score = 172 bits (437), Expect = 8e-43
Identities = 83/142 (58%), Positives = 100/142 (70%), Gaps = 4/142 (2%)
Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAV--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
F+GL+++ F K+ N L+ SNG RVS M VW P KKFETLSYLPPLS E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAE 475
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAXRQVQ 541
K YPE F+R++GFD RQVQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQ 167


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
Length = 183

Score = 172 bits (436), Expect = 1e-42
Identities = 81/142 (57%), Positives = 103/142 (72%), Gaps = 4/142 (2%)
Frame = +2

Query: 128 FSGLKATTLF-APKSPNPLA--VSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
F+GLK+++ F + N + SNG RV M VW P KKFETLSYLPPLSSE +AK+
Sbjct: 30 FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 299 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAE 475
VD+++RK W PC+EF+ + G VYRE+ GYYDGRYW MWKLPMFGC D++ VL+E E
Sbjct: 90 VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 476 CAKEYPEAFIRVLGFDAXRQVQ 541
K YP++FIR++GFD RQVQ
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQ 171


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 172 bits (436), Expect = 1e-42
Identities = 82/147 (55%), Positives = 102/147 (69%), Gaps = 8/147 (5%)
Frame = +2

Query: 125 SFSGLKATTLFAP--KSPNPLA------VSNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 280
+F+GLK+T F K N A SNG RV M VW P+ N KFETLSYLP L+
Sbjct: 15 AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 281 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
EQ+ K+V++++R W PC+EFD GS+ R++ GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75 EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 461 RETAECAKEYPEAFIRVLGFDAXRQVQ 541
E ECAK YP+AFIRV+GFD RQVQ
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQ 161


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 145
Score (bit) 272.0
E-value 8.0e-72
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943605|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_F22, 5'
(563 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 272 8e-72
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 191 2e-47
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 188 2e-46
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 187 3e-46
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 187 4e-46
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 187 4e-46
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 184 3e-45
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 181 3e-44
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 180 4e-44
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 180 4e-44
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 179 7e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 178 2e-43
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 177 3e-43
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 177 4e-43
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 176 6e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 176 6e-43
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 175 1e-42
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 175 1e-42
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 175 1e-42
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 174 2e-42
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c... 174 4e-42
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c... 174 4e-42
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c... 173 7e-42
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 173 7e-42
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 172 9e-42
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c... 172 9e-42
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c... 172 9e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 172 1e-41
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c... 172 1e-41
tr|Q9SAW7|Q9SAW7_TRITU Ribulose bisphosphate carboxylase small c... 172 1e-41

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 272 bits (696), Expect = 8e-72
Identities = 125/145 (86%), Positives = 136/145 (93%)
Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
LSKSFSGLKA TLFAPK NPLA+SNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22 LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAE 475
QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLRE AE
Sbjct: 82 QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CAKEYPEAFIRVLGFDAXRQVQVSG 550
CAKEYP AFIRVLGFDA RQVQV+G
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAG 166


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 191 bits (485), Expect = 2e-47
Identities = 90/146 (61%), Positives = 108/146 (73%), Gaps = 3/146 (2%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K FSGLK+TTLFA K+ +V NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 27 KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLRE
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSG 550
EC + +P ++RVLGFD+ +QVQ+ G
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICG 172


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 188 bits (477), Expect = 2e-46
Identities = 89/146 (60%), Positives = 107/146 (73%), Gaps = 3/146 (2%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K FSGLK+TTL A K+ +V NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 27 KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLRE
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSG 550
EC + +P ++RVLGFD+ +QVQ+ G
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICG 172


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 187 bits (475), Expect = 3e-46
Identities = 87/146 (59%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK+ TLF KS +V NGSRV M VW P KFET SYLPPLS +QIA+QV
Sbjct: 32 KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
D+M+++ PCIEFD +G+V R +F G SGYYDGRYW MWKLPMFGC D++ VLRE
Sbjct: 92 DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSG 550
EC YP ++RVLGFD+ +QVQ+ G
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICG 177


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 187 bits (474), Expect = 4e-46
Identities = 86/146 (58%), Positives = 108/146 (73%), Gaps = 3/146 (2%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK+ TLF+ K+ +V NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 62 KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLRE
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSG 550
EC ++P ++RVLGFD+ +QVQ+ G
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICG 207


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 187 bits (474), Expect = 4e-46
Identities = 87/146 (59%), Positives = 107/146 (73%), Gaps = 3/146 (2%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK TLF+ K+ AV NGSRV M VW P KFET SYLPPL+ +QIAKQV
Sbjct: 32 KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLRE
Sbjct: 92 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSG 550
EC ++P ++RVLGFD+ +QVQ+ G
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICG 177


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 184 bits (467), Expect = 3e-45
Identities = 84/146 (57%), Positives = 108/146 (73%), Gaps = 3/146 (2%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK+ TLF+ ++ +V NGSRV M VW P KFET SYLPPL+ ++IAKQV
Sbjct: 31 KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLRETA 472
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLRE
Sbjct: 91 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECAKEYPEAFIRVLGFDAXRQVQVSG 550
EC ++P ++RVLGFD+ +QVQ+ G
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICG 176


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 181 bits (458), Expect = 3e-44
Identities = 83/143 (58%), Positives = 102/143 (71%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK+ T+F+ K+ N +V NGSRV M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAECA 481
++M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD+A VLRE EC
Sbjct: 92 EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAXRQVQVSG 550
K +P F+RVLGFD +QVQ+ G
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICG 174


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 180 bits (457), Expect = 4e-44
Identities = 84/143 (58%), Positives = 102/143 (71%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK++TLF+ K+ + +V NGSRV M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAECA 481
D+M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD A VLRE EC
Sbjct: 92 DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAXRQVQVSG 550
K +P F+RVLGFD +QVQ+ G
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICG 174


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_123666 PE=3 SV=1
Length = 181

Score = 180 bits (457), Expect = 4e-44
Identities = 84/143 (58%), Positives = 103/143 (72%)
Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAVSNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
K+FSGLK+ TLF+ +S +V NGSRV+ M VW P KFET SYLPPLS + IAKQV
Sbjct: 32 KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRETAECA 481
++M+++ PC+EFD V RE+ GYYDGRYW MWKLPMFGCQD+A VLRE EC
Sbjct: 92 EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAXRQVQVSG 550
K +P F+RVLGFD +QVQ+ G
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICG 174