DK943612 [AcEST]

DK943612
Clone id	YMU02A01NGRL0003_G06
Library	YMU02
Length	536
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_G06. 5' end sequence.
Accession	DK943612
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	GAAGCAGTGGTATCACGCAGAGTGGCCATTACGGCCGGGGTATCGTAGCGGGTATAGTTT AGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCGGC TAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAATATGTGTTTTCTTATTATTTC TCCAAAATTAGAAGTAGATTAATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAAG ATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTTC CGGGGAGATAAATAAAGAAAAAAATCTACGGGTAGACGTCTAAGATAGCTGACTCATCGT CACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTGT CAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGA TATATTTCCCTAAGGGTTTTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q5E6M2
Definition	sp\|Q5E6M2\|ZNUC1_VIBF1 Zinc import ATP-binding protein znuC 1 OS=Vibrio fischeri (strain ATCC 700601 / ES114)
Align length	51
Score (bit)	29.3
E-value	8.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK943612\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_G06, 5' (468 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q5E6M2\|ZNUC1_VIBF1 Zinc import ATP-binding protein znuC 1 OS=... 29 8.9 >sp\|Q5E6M2\|ZNUC1_VIBF1 Zinc import ATP-binding protein znuC 1 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=znuC1 PE=3 SV=1 Length = 256 Score = 29.3 bits (64), Expect = 8.9 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +2 Query: 239 ILGLIS-TSGEINKEKNLRVDVDSLIVTKPQRINLGKKVGINKSGFVKI 388 ILGL TSG I KEK LR+ PQ+++L + ++ GF+K+ Sbjct: 50 ILGLQKPTSGTIKKEKKLRIGY--------VPQKLHLNDSLPLSVHGFLKL 92
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	35.0
E-value	1.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK943612\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0003_G06, 5' (468 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 35.0 bits (79), Expect = 1.9 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = -1 Query: 189 LKMSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 40 LK +++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283