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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943613
Clone id YMU02A01NGRL0003_G07
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_G07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACTCTACGAGGCTCAAACACTGCACTCGAGGTCTTGGCAGAGCTTTATTGGCATTTAGCA
CTTGTACAACGATTCTCACCTAAATGCATCCATTGAATTGCAGGTTTCTTTGCTTTCTCA
TGGTCAGCAGCTATGCCCTACTAGAAATTGGCTACCGCTGAAGCTAGCACATATCACTAG
ATGATTTATGGCTTGTATCATAAGTATCACAACAATTGTTCAAGCATAAGGCGGAATTGC
TGAAGAAGATTAAGAGGCGTGATAGCACCTATAATCATGGAAAATCTGGACCACAATAAG
ATTAAAAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACTAAA
CCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTGTCAAGATT
ATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGATATATTT
CCCTAAGGGTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4R681
Definition sp|Q4R681|MSTO1_MACFA Protein misato homolog 1 OS=Macaca fascicularis
Align length 31
Score (bit) 30.4
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943613|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_G07, 5'
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4R681|MSTO1_MACFA Protein misato homolog 1 OS=Macaca fascicu...    30   4.7  
sp|Q2IPI8|KUP_ANADE Probable potassium transport system protein ...    30   6.3  

>sp|Q4R681|MSTO1_MACFA Protein misato homolog 1 OS=Macaca
           fascicularis GN=MSTO1 PE=2 SV=2
          Length = 569

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  LYNDSHLNASIELQVSLLSHGQQLCPTRNWL 154
           LY D  L+A+I  Q  L +H ++LCP   +L
Sbjct: 85  LYRDKQLDAAIAWQGKLTTHKEELCPKNPYL 115


>sp|Q2IPI8|KUP_ANADE Probable potassium transport system protein kup
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=kup
           PE=3 SV=1
          Length = 670

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 256 GVIAPIIMENLDHNKIKKEKNLWVDV*DS*L-IVTKPQRINLGKKVGINKSGFVKIIEH 429
           G + P+++ +L HNK+  E+ + V +    +  V + +R+N  +++G   SGF ++I H
Sbjct: 528 GGVPPVLLHHLKHNKVLHERVILVSILAHEIPFVAEAERVN-ARELG---SGFFQVIAH 582
tr_hit_id Q6VEE3
Definition tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
Align length 47
Score (bit) 33.1
E-value 7.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943613|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_G07, 5'
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley...    33   7.4  
tr|B4UFX7|B4UFX7_ANASK K potassium transporter OS=Anaeromyxobact...    33   9.7  
tr|B8JF01|B8JF01_9DELT K potassium transporter OS=Anaeromyxobact...    33   9.7  

>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
           GN=rpl16 PE=3 SV=1
          Length = 138

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 301 IKKEKNLWVDV*DS*LIVTKPQRINLGKKVGINK--SGFVKIIEHLF 435
           +KK+  +W+++  S +I  KPQ + +GK  G  K  + F+K  E LF
Sbjct: 59  LKKQAKIWINIFPSKMITKKPQEVRMGKGKGYVKYWAYFIKKNEILF 105


>tr|B4UFX7|B4UFX7_ANASK K potassium transporter OS=Anaeromyxobacter
           sp. (strain K) GN=AnaeK_1010 PE=4 SV=1
          Length = 671

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 256 GVIAPIIMENLDHNKIKKEKNLWVDV*DS*L-IVTKPQRINLGKKVGINKSGFVKIIEH 429
           G + P+++ +L HNK+  E+ + V +    +  V +P+R+N  +++G   SGF ++I H
Sbjct: 529 GGVPPVLLHHLKHNKVLHERVVLVSILAHEIPFVNEPERVN-ARELG---SGFFQVIAH 583


>tr|B8JF01|B8JF01_9DELT K potassium transporter OS=Anaeromyxobacter
           dehalogenans 2CP-1 GN=A2cp1_1007 PE=4 SV=1
          Length = 671

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 256 GVIAPIIMENLDHNKIKKEKNLWVDV*DS*L-IVTKPQRINLGKKVGINKSGFVKIIEH 429
           G + P+++ +L HNK+  E+ + V +    +  V +P+R+N  +++G   SGF ++I H
Sbjct: 529 GGVPPVLLHHLKHNKVLHERVVLVSILAHEIPFVNEPERVN-ARELG---SGFFQVIAH 583