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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943618
Clone id YMU02A01NGRL0003_G13
Library
Length 272
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_G13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGAGCTCCAGATTAGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTG
GGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTC
TAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACC
GGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTGCATACATAATG
AAACAACTTCCCAGTGGTGGCTTCACTGCTCA
■■Homology search results ■■ -
sp_hit_id O22645
Definition sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis
Align length 33
Score (bit) 51.2
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943618|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_G13, 5'
         (272 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...    51   2e-06
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...    51   2e-06
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...    51   2e-06
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    51   2e-06
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    50   4e-06
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...    50   4e-06
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...    50   5e-06
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    49   8e-06
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    49   8e-06
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    49   8e-06
sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai...    49   1e-05
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    49   1e-05
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    49   1e-05
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...    48   1e-05
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai...    48   2e-05
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...    48   2e-05
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    48   2e-05
sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha...    47   2e-05
sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha...    47   2e-05
sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha...    47   2e-05
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...    47   2e-05
sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha...    47   2e-05
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...    47   2e-05

>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2
           SV=1
          Length = 179

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 16  AECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           AEC KEYP AFIRV+GFD  RQVQ   F+V+KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
           SV=1
          Length = 179

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 16  AECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           AEC KEYP AFIRV+GFD  RQVQ   F+V+KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2
           SV=1
          Length = 179

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 16  AECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           AEC KEYP AFIRV+GFD  RQVQ   F+V+KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +1

Query: 7   SRLAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 117
           + L EC KEYP AFIR++GFD+ RQVQ   F+  KP+
Sbjct: 142 NELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           L EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 146 LEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain
           1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2
           SV=1
          Length = 179

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +1

Query: 16  AECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           AEC KEYP AFIRV+GFD  RQVQ   F+V++P
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 7   SRLAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           + + ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 22/32 (68%), Positives = 24/32 (75%)
 Frame = +1

Query: 19  ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           ECAK YP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 155 ECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           + EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 144 VGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5
           PE=2 SV=1
          Length = 184

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +1

Query: 7   SRLAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           S +  C K +P+A+IR++ FDA RQVQ+SGFLV +P
Sbjct: 135 SEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 170
tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 35
Score (bit) 67.8
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943618|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_G13, 5'
         (272 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c...    68   3e-10
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    67   4e-10
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c...    66   1e-09
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...    50   6e-05
tr|A9NXP2|A9NXP2_PICSI Ribulose bisphosphate carboxylase small c...    50   6e-05
tr|Q8RVI7|Q8RVI7_PINPS Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|B8LPE7|B8LPE7_PICSI Putative uncharacterized protein OS=Picea...    49   9e-05
tr|B8LN69|B8LN69_PICSI Putative uncharacterized protein OS=Picea...    49   9e-05
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...    49   9e-05
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q6LBP1|Q6LBP1_LARLA Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q6LBP0|Q6LBP0_LARLA Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q14K75|Q14K75_PLAAC Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...    49   1e-04
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c...    49   2e-04
tr|Q106Z5|Q106Z5_MUSAC Ribulose bisphosphate carboxylase small c...    49   2e-04
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    49   2e-04

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
          Length = 43

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 31/35 (88%), Positives = 34/35 (97%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 117
           +AECAKEYP AFIRVLGFDAKRQVQV+GFLVQ+PS
Sbjct: 8   IAECAKEYPSAFIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 31/35 (88%), Positives = 34/35 (97%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 117
           +AECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 139 IAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
          Length = 34

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           +AECAKEYP AFIRVLGFDAKRQVQV+GFLV+KP
Sbjct: 1   IAECAKEYPNAFIRVLGFDAKRQVQVAGFLVKKP 34


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           + EC KEYP AFIRV+GFD+ RQVQ   F+V KP
Sbjct: 144 VGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small
           chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1
          Length = 180

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +1

Query: 7   SRLAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 117
           + L EC KEYP AFIR++GFD+ RQVQ   F+  KP+
Sbjct: 142 NELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small
           chain OS=Ammopiptanthus mongolicus PE=2 SV=1
          Length = 174

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 13  LAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           L EC KEYP AF+R++GFD KRQVQ   F+  KP
Sbjct: 136 LEECKKEYPTAFVRIIGFDNKRQVQCISFIAYKP 169


>tr|A9NXP2|A9NXP2_PICSI Ribulose bisphosphate carboxylase small
           chain OS=Picea sitchensis PE=2 SV=1
          Length = 188

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/37 (62%), Positives = 25/37 (67%)
 Frame = +1

Query: 7   SRLAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 117
           S L EC K YP A+IR LGFD KRQ Q   F+V KPS
Sbjct: 149 SELEECKKAYPNAYIRCLGFDNKRQTQCIAFIVHKPS 185


>tr|Q8RVI7|Q8RVI7_PINPS Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pinus pinaster PE=2 SV=1
          Length = 148

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 19  ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 117 ECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 148


>tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Batophora oerstedii GN=rbcS PE=2
           SV=1
          Length = 97

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 19/36 (52%), Positives = 29/36 (80%)
 Frame = +1

Query: 7   SRLAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           + +A C K +P+A++R++ FDA RQVQ+SGFLV +P
Sbjct: 48  TEIAACTKAFPDAYVRLVCFDANRQVQISGFLVHRP 83


>tr|B8LPE7|B8LPE7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 169

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 19  ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 114
           ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 ECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 166